RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 NISCHQ9Y2I1 1504 aa21.22■□□□□ 0.99
TRIM39-202ENST00000376659 CCDC180Q9P1Z9 1646 aa18.43■□□□□ 0.54
TRIM39-202ENST00000376659 ZCCHC6Q5VYS8 1495 aaKnown RBP18.03■□□□□ 0.48
TRIM39-202ENST00000376659 DCAF1Q9Y4B6 1507 aa17.65■□□□□ 0.42
TRIM39-202ENST00000376659 SHROOM4Q9ULL8 1493 aa17.35■□□□□ 0.37
TRIM39-202ENST00000376659 MYO15BQ96JP2 1530 aa17.22■□□□□ 0.35
TRIM39-202ENST00000376659 ABCC9O60706 1549 aa17.06■□□□□ 0.32
TRIM39-202ENST00000376659 SCRIBQ14160 1630 aa16.85■□□□□ 0.29
TRIM39-202ENST00000376659 NACADO15069 1562 aa16.83■□□□□ 0.28
TRIM39-202ENST00000376659 SUPT5HO00267 1087 aaKnown RBP16.79■□□□□ 0.28
TRIM39-202ENST00000376659 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
TRIM39-202ENST00000376659 RSF1Q96T23 1441 aaPredicted RBP16.62■□□□□ 0.25
TRIM39-202ENST00000376659 DCAF8L2P0C7V8 631 aa16.61■□□□□ 0.25
TRIM39-202ENST00000376659 CHIC1Q5VXU3 224 aa16.6■□□□□ 0.25
TRIM39-202ENST00000376659 RB1CC1Q8TDY2 1594 aa16.56■□□□□ 0.24
TRIM39-202ENST00000376659 EIF4G1Q04637 1599 aaKnown RBP16.51■□□□□ 0.23
TRIM39-202ENST00000376659 MROH2BQ7Z745 1585 aa16.45■□□□□ 0.22
TRIM39-202ENST00000376659 CECR2Q9BXF3 1484 aa16.44■□□□□ 0.22
TRIM39-202ENST00000376659 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
TRIM39-202ENST00000376659 WIZO95785 1651 aa16.42■□□□□ 0.22
TRIM39-202ENST00000376659 BICRAQ9NZM4 1560 aa16.29■□□□□ 0.2
TRIM39-202ENST00000376659 SMARCA4P51532 1647 aa16.28■□□□□ 0.2
TRIM39-202ENST00000376659 TOP2AP11388 1531 aaKnown RBP16.19■□□□□ 0.18
TRIM39-202ENST00000376659 PEG3Q9GZU2 1588 aa16.16■□□□□ 0.18
TRIM39-202ENST00000376659 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
TRIM39-202ENST00000376659 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.15
TRIM39-202ENST00000376659 LOC105371045A0A1W2PR82 267 aa15.92■□□□□ 0.14
TRIM39-202ENST00000376659 ABCC8Q09428 1581 aa15.86■□□□□ 0.13
TRIM39-202ENST00000376659 HRCP23327 699 aa15.79■□□□□ 0.12
TRIM39-202ENST00000376659 TRIM41Q8WV44 630 aa15.73■□□□□ 0.11
TRIM39-202ENST00000376659 ATAD2BQ9ULI0 1458 aa15.73■□□□□ 0.11
TRIM39-202ENST00000376659 SYNJ1O43426 1573 aa15.7■□□□□ 0.1
TRIM39-202ENST00000376659 PRDM2Q13029 1718 aa15.65■□□□□ 0.1
TRIM39-202ENST00000376659 BIVM-ERCC5R4GMW8 1640 aa15.64■□□□□ 0.09
TRIM39-202ENST00000376659 HMGXB3Q12766 1538 aa15.64■□□□□ 0.09
TRIM39-202ENST00000376659 PCGF6Q9BYE7 350 aa15.63■□□□□ 0.09
TRIM39-202ENST00000376659 KIF21BO75037 1637 aa15.59■□□□□ 0.09
TRIM39-202ENST00000376659 SOGA1O94964 1423 aa15.57■□□□□ 0.08
TRIM39-202ENST00000376659 RUSC2Q8N2Y8 1516 aa15.57■□□□□ 0.08
TRIM39-202ENST00000376659 BAZ1BQ9UIG0 1483 aaKnown RBP15.57■□□□□ 0.08
TRIM39-202ENST00000376659 TOP2BQ02880 1626 aa15.56■□□□□ 0.08
TRIM39-202ENST00000376659 WRNQ14191 1432 aaPredicted RBP eCLIP15.56■□□□□ 0.08
TRIM39-202ENST00000376659 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
TRIM39-202ENST00000376659 TRIM26Q12899 539 aaPredicted RBP15.55■□□□□ 0.08
TRIM39-202ENST00000376659 EEA1Q15075 1411 aa15.53■□□□□ 0.08
TRIM39-202ENST00000376659 NCAPD3P42695 1498 aa15.49■□□□□ 0.07
TRIM39-202ENST00000376659 TNIKQ9UKE5 1360 aa15.42■□□□□ 0.06
TRIM39-202ENST00000376659 FAM9AQ8IZU1 332 aaPredicted RBP15.42■□□□□ 0.06
TRIM39-202ENST00000376659 CEP162Q5TB80 1403 aa15.41■□□□□ 0.06
TRIM39-202ENST00000376659 GOLGA3Q08378 1498 aa15.38■□□□□ 0.05
TRIM39-202ENST00000376659 PPARGC1BQ86YN6 1023 aaKnown RBP15.37■□□□□ 0.05
TRIM39-202ENST00000376659 CUX1P39880 1505 aa15.36■□□□□ 0.05
TRIM39-202ENST00000376659 CFTRP13569 1480 aa15.33■□□□□ 0.05
TRIM39-202ENST00000376659 CEP164Q9UPV0 1460 aa15.32■□□□□ 0.04
TRIM39-202ENST00000376659 ERICH3Q5RHP9 1530 aa15.31■□□□□ 0.04
TRIM39-202ENST00000376659 PRXQ9BXM0 1461 aa15.25■□□□□ 0.03
TRIM39-202ENST00000376659 RAPGEF2Q9Y4G8 1499 aa15.25■□□□□ 0.03
TRIM39-202ENST00000376659 CSRNP3Q8WYN3 585 aa15.23■□□□□ 0.03
TRIM39-202ENST00000376659 CC2D2AQ9P2K1 1620 aa15.21■□□□□ 0.02
TRIM39-202ENST00000376659 WDR97A6NE52 1622 aa15.15■□□□□ 0.02
TRIM39-202ENST00000376659 ARAP1Q96P48 1450 aa15.14■□□□□ 0.01
TRIM39-202ENST00000376659 EHMT2Q96KQ7 1210 aa15.13■□□□□ 0.01
TRIM39-202ENST00000376659 VPS8Q8N3P4 1428 aa15.12■□□□□ 0.01
TRIM39-202ENST00000376659 CLIP1P30622 1438 aa15.1■□□□□ 0.01
TRIM39-202ENST00000376659 ZEB1P37275 1124 aaPredicted RBP15.06■□□□□ 0
TRIM39-202ENST00000376659 DNMBPQ6XZF7 1577 aa15□□□□□ -0.01
TRIM39-202ENST00000376659 CADPSQ9ULU8 1353 aa15□□□□□ -0.01
TRIM39-202ENST00000376659 FGD5Q6ZNL6 1462 aa14.98□□□□□ -0.01
TRIM39-202ENST00000376659 KIF27Q86VH2 1401 aa14.97□□□□□ -0.01
TRIM39-202ENST00000376659 ARHGAP35Q9NRY4 1499 aa14.97□□□□□ -0.01
TRIM39-202ENST00000376659 CFAP43Q8NDM7 1665 aa14.97□□□□□ -0.01
TRIM39-202ENST00000376659 CTTNBP2Q8WZ74 1663 aa14.95□□□□□ -0.02
TRIM39-202ENST00000376659 ABCA5Q8WWZ7 1642 aa14.93□□□□□ -0.02
TRIM39-202ENST00000376659 LAMC3Q9Y6N6 1575 aa14.92□□□□□ -0.02
TRIM39-202ENST00000376659 CUL7Q14999 1698 aa14.91□□□□□ -0.02
TRIM39-202ENST00000376659 ABCA10Q8WWZ4 1543 aa14.91□□□□□ -0.02
TRIM39-202ENST00000376659 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
TRIM39-202ENST00000376659 MAP3K1Q13233 1512 aa14.9□□□□□ -0.02
TRIM39-202ENST00000376659 LRRIQ1Q96JM4 1722 aa14.9□□□□□ -0.02
TRIM39-202ENST00000376659 KIF21AQ7Z4S6 1674 aa14.89□□□□□ -0.03
TRIM39-202ENST00000376659 CUX2O14529 1486 aa14.89□□□□□ -0.03
TRIM39-202ENST00000376659 IGF1RP08069 1367 aa14.89□□□□□ -0.03
TRIM39-202ENST00000376659 TOPBP1Q92547 1522 aa14.89□□□□□ -0.03
TRIM39-202ENST00000376659 UBTFP17480 764 aaKnown RBP14.88□□□□□ -0.03
TRIM39-202ENST00000376659 POLA1P09884 1462 aaPredicted RBP14.86□□□□□ -0.03
TRIM39-202ENST00000376659 RRBP1Q9P2E9 1410 aaKnown RBP14.85□□□□□ -0.03
TRIM39-202ENST00000376659 TIAM1Q13009 1591 aa14.85□□□□□ -0.03
TRIM39-202ENST00000376659 NESP48681 1621 aa14.85□□□□□ -0.03
TRIM39-202ENST00000376659 URB2Q14146 1524 aaKnown RBP14.84□□□□□ -0.03
TRIM39-202ENST00000376659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.83□□□□□ -0.03
TRIM39-202ENST00000376659 TARBP1Q13395 1621 aaKnown RBP14.82□□□□□ -0.04
TRIM39-202ENST00000376659 PCF11O94913 1555 aaKnown RBP14.82□□□□□ -0.04
TRIM39-202ENST00000376659 SAMD9Q5K651 1589 aa14.81□□□□□ -0.04
TRIM39-202ENST00000376659 PELP1Q8IZL8 1130 aaKnown RBP14.81□□□□□ -0.04
TRIM39-202ENST00000376659 PBRM1Q86U86 1689 aa14.77□□□□□ -0.05
TRIM39-202ENST00000376659 RAD54L2Q9Y4B4 1467 aa14.76□□□□□ -0.05
TRIM39-202ENST00000376659 EFCAB5A4FU69 1503 aa14.76□□□□□ -0.05
TRIM39-202ENST00000376659 AQRO60306 1485 aaKnown RBP eCLIP14.71□□□□□ -0.051e-6■■■■■ 29.2
TRIM39-202ENST00000376659 SNAPC4Q5SXM2 1469 aa14.71□□□□□ -0.06
TRIM39-202ENST00000376659 CARMIL1Q5VZK9 1371 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms