RNA–Protein interactions for RNA: ENST00000374676.4

HSPG2-202, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 3

Gene HSPG2, Length 411 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-202ENST00000374676 NISCHQ9Y2I1 1504 aa27.17■■□□□ 1.94
HSPG2-202ENST00000374676 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
HSPG2-202ENST00000374676 ABCC9O60706 1549 aa23.26■■□□□ 1.31
HSPG2-202ENST00000374676 ZCCHC6Q5VYS8 1495 aaKnown RBP22.67■■□□□ 1.22
HSPG2-202ENST00000374676 DCAF8L2P0C7V8 631 aa22.58■■□□□ 1.21
HSPG2-202ENST00000374676 NACADO15069 1562 aa22.57■■□□□ 1.2
HSPG2-202ENST00000374676 MYO15BQ96JP2 1530 aa22.54■■□□□ 1.2
HSPG2-202ENST00000374676 DCAF1Q9Y4B6 1507 aa22.52■■□□□ 1.2
HSPG2-202ENST00000374676 RB1CC1Q8TDY2 1594 aa22.52■■□□□ 1.2
HSPG2-202ENST00000374676 UNC13AQ9UPW8 1703 aa22.02■■□□□ 1.12
HSPG2-202ENST00000374676 SCRIBQ14160 1630 aa21.91■■□□□ 1.1
HSPG2-202ENST00000374676 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
HSPG2-202ENST00000374676 PABPN1Q86U42 306 aaKnown RBP eCLIP21.79■■□□□ 1.08
HSPG2-202ENST00000374676 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.06
HSPG2-202ENST00000374676 EIF4G1Q04637 1599 aaKnown RBP21.22■□□□□ 0.99
HSPG2-202ENST00000374676 DNAJC5BQ9UF47 199 aa21.17■□□□□ 0.98
HSPG2-202ENST00000374676 CECR2Q9BXF3 1484 aa21.13■□□□□ 0.97
HSPG2-202ENST00000374676 CC2D2AQ9P2K1 1620 aa21.07■□□□□ 0.96
HSPG2-202ENST00000374676 BAZ1AQ9NRL2 1556 aaPredicted RBP21.04■□□□□ 0.96
HSPG2-202ENST00000374676 SMARCA4P51532 1647 aa21.02■□□□□ 0.96
HSPG2-202ENST00000374676 MROH2BQ7Z745 1585 aa20.93■□□□□ 0.94
HSPG2-202ENST00000374676 ATAD2BQ9ULI0 1458 aa20.86■□□□□ 0.93
HSPG2-202ENST00000374676 SMARCA2P51531 1590 aa20.85■□□□□ 0.93
HSPG2-202ENST00000374676 PEG3Q9GZU2 1588 aa20.84■□□□□ 0.93
HSPG2-202ENST00000374676 NCAPD3P42695 1498 aa20.83■□□□□ 0.93
HSPG2-202ENST00000374676 RSF1Q96T23 1441 aaPredicted RBP20.79■□□□□ 0.92
HSPG2-202ENST00000374676 HMGXB3Q12766 1538 aa20.73■□□□□ 0.91
HSPG2-202ENST00000374676 WIZO95785 1651 aa20.71■□□□□ 0.91
HSPG2-202ENST00000374676 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
HSPG2-202ENST00000374676 TOP2AP11388 1531 aaKnown RBP20.51■□□□□ 0.87
HSPG2-202ENST00000374676 SUPT5HO00267 1087 aaKnown RBP20.42■□□□□ 0.86
HSPG2-202ENST00000374676 CCDC88BA6NC98 1476 aa20.29■□□□□ 0.84
HSPG2-202ENST00000374676 CADPSQ9ULU8 1353 aa20.23■□□□□ 0.83
HSPG2-202ENST00000374676 LAMC3Q9Y6N6 1575 aa20.22■□□□□ 0.83
HSPG2-202ENST00000374676 NESP48681 1621 aa20.2■□□□□ 0.82
HSPG2-202ENST00000374676 CFTRP13569 1480 aa20.16■□□□□ 0.82
HSPG2-202ENST00000374676 PDS5BQ9NTI5 1447 aa20.09■□□□□ 0.81
HSPG2-202ENST00000374676 ERCC6Q03468 1493 aa20.03■□□□□ 0.8
HSPG2-202ENST00000374676 PRDM2Q13029 1718 aa20.02■□□□□ 0.8
HSPG2-202ENST00000374676 KIF21AQ7Z4S6 1674 aa19.98■□□□□ 0.79
HSPG2-202ENST00000374676 FANCD2Q9BXW9 1451 aa19.97■□□□□ 0.79
HSPG2-202ENST00000374676 CEP164Q9UPV0 1460 aa19.92■□□□□ 0.78
HSPG2-202ENST00000374676 THOC2Q8NI27 1593 aaKnown RBP19.86■□□□□ 0.77
HSPG2-202ENST00000374676 MRC2Q9UBG0 1479 aa19.85■□□□□ 0.77
HSPG2-202ENST00000374676 WDR62O43379 1518 aa19.77■□□□□ 0.76
HSPG2-202ENST00000374676 CUX2O14529 1486 aa19.77■□□□□ 0.76
HSPG2-202ENST00000374676 URB2Q14146 1524 aaKnown RBP19.75■□□□□ 0.75
HSPG2-202ENST00000374676 ABCC8Q09428 1581 aa19.74■□□□□ 0.75
HSPG2-202ENST00000374676 DNMBPQ6XZF7 1577 aa19.69■□□□□ 0.74
HSPG2-202ENST00000374676 TOPBP1Q92547 1522 aa19.68■□□□□ 0.74
HSPG2-202ENST00000374676 CUX1P39880 1505 aa19.61■□□□□ 0.73
HSPG2-202ENST00000374676 WRNQ14191 1432 aaPredicted RBP eCLIP19.59■□□□□ 0.73
HSPG2-202ENST00000374676 TOP2BQ02880 1626 aa19.53■□□□□ 0.72
HSPG2-202ENST00000374676 POLA1P09884 1462 aaPredicted RBP19.53■□□□□ 0.72
HSPG2-202ENST00000374676 BIVM-ERCC5R4GMW8 1640 aa19.52■□□□□ 0.72
HSPG2-202ENST00000374676 FGD5Q6ZNL6 1462 aa19.51■□□□□ 0.71
HSPG2-202ENST00000374676 IFT140Q96RY7 1462 aa19.51■□□□□ 0.71
HSPG2-202ENST00000374676 SYNJ1O43426 1573 aa19.51■□□□□ 0.71
HSPG2-202ENST00000374676 SOGA1O94964 1423 aa19.47■□□□□ 0.71
HSPG2-202ENST00000374676 TARBP1Q13395 1621 aaKnown RBP19.46■□□□□ 0.71
HSPG2-202ENST00000374676 RAD54L2Q9Y4B4 1467 aa19.43■□□□□ 0.7
HSPG2-202ENST00000374676 ZNF608Q9ULD9 1512 aaPredicted RBP19.37■□□□□ 0.69
HSPG2-202ENST00000374676 ABCA10Q8WWZ4 1543 aa19.35■□□□□ 0.69
HSPG2-202ENST00000374676 WDR97A6NE52 1622 aa19.34■□□□□ 0.69
HSPG2-202ENST00000374676 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
HSPG2-202ENST00000374676 AQRO60306 1485 aaKnown RBP eCLIP19.31■□□□□ 0.682e-7■■■■■ 40.7
HSPG2-202ENST00000374676 TRIM41Q8WV44 630 aa19.31■□□□□ 0.68
HSPG2-202ENST00000374676 EIF4G3O43432 1585 aaKnown RBP19.3■□□□□ 0.68
HSPG2-202ENST00000374676 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
HSPG2-202ENST00000374676 GAPVD1Q14C86 1478 aa19.24■□□□□ 0.67
HSPG2-202ENST00000374676 ABCA5Q8WWZ7 1642 aa19.24■□□□□ 0.67
HSPG2-202ENST00000374676 GRIN2BQ13224 1484 aa19.21■□□□□ 0.67
HSPG2-202ENST00000374676 KIF27Q86VH2 1401 aa19.17■□□□□ 0.66
HSPG2-202ENST00000374676 PBRM1Q86U86 1689 aa19.17■□□□□ 0.66
HSPG2-202ENST00000374676 MAGI1Q96QZ7 1491 aaPredicted RBP19.13■□□□□ 0.65
HSPG2-202ENST00000374676 ERICH3Q5RHP9 1530 aa19.13■□□□□ 0.65
HSPG2-202ENST00000374676 SNAPC4Q5SXM2 1469 aa19.11■□□□□ 0.65
HSPG2-202ENST00000374676 IGF1RP08069 1367 aa19.08■□□□□ 0.65
HSPG2-202ENST00000374676 RUSC2Q8N2Y8 1516 aa19.05■□□□□ 0.64
HSPG2-202ENST00000374676 SYNJ2O15056 1496 aa19.05■□□□□ 0.64
HSPG2-202ENST00000374676 FHAD1B1AJZ9 1412 aa19.04■□□□□ 0.64
HSPG2-202ENST00000374676 CHMP7Q8WUX9 453 aaPredicted RBP19.03■□□□□ 0.64
HSPG2-202ENST00000374676 CHD1O14646 1710 aa19.03■□□□□ 0.64
HSPG2-202ENST00000374676 ADAMTS12P58397 1594 aa19.02■□□□□ 0.64
HSPG2-202ENST00000374676 FBLN2P98095 1184 aa19.02■□□□□ 0.64
HSPG2-202ENST00000374676 OSCARQ8IYS5 282 aa19.02■□□□□ 0.64
HSPG2-202ENST00000374676 CUL7Q14999 1698 aa18.99■□□□□ 0.63
HSPG2-202ENST00000374676 EEA1Q15075 1411 aa18.99■□□□□ 0.63
HSPG2-202ENST00000374676 CARMIL1Q5VZK9 1371 aa18.97■□□□□ 0.63
HSPG2-202ENST00000374676 GRIN2AQ12879 1464 aa18.95■□□□□ 0.62
HSPG2-202ENST00000374676 CSRNP3Q8WYN3 585 aa18.93■□□□□ 0.62
HSPG2-202ENST00000374676 DNAJC5Q9H3Z4 198 aa18.9■□□□□ 0.62
HSPG2-202ENST00000374676 NUP160Q12769 1436 aa18.87■□□□□ 0.61
HSPG2-202ENST00000374676 PRXQ9BXM0 1461 aa18.87■□□□□ 0.61
HSPG2-202ENST00000374676 RAPGEF2Q9Y4G8 1499 aa18.87■□□□□ 0.61
HSPG2-202ENST00000374676 FAM9AQ8IZU1 332 aaPredicted RBP18.86■□□□□ 0.61
HSPG2-202ENST00000374676 CEP170Q5SW79 1584 aa18.83■□□□□ 0.6
HSPG2-202ENST00000374676 CLASP1Q7Z460 1538 aa18.83■□□□□ 0.6
HSPG2-202ENST00000374676 KIAA0586Q9BVV6 1533 aa18.76■□□□□ 0.59
HSPG2-202ENST00000374676 KIF21BO75037 1637 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms