RNA–Protein interactions for RNA: ENST00000374487.6

HMGCL-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,151 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-202ENST00000374487 NISCHQ9Y2I1 1504 aa27■■□□□ 1.91
HMGCL-202ENST00000374487 CCDC180Q9P1Z9 1646 aa23.84■■□□□ 1.41
HMGCL-202ENST00000374487 ABCC9O60706 1549 aa23.56■■□□□ 1.36
HMGCL-202ENST00000374487 DCAF8L2P0C7V8 631 aa22.77■■□□□ 1.24
HMGCL-202ENST00000374487 ZCCHC6Q5VYS8 1495 aaKnown RBP22.49■■□□□ 1.19
HMGCL-202ENST00000374487 RB1CC1Q8TDY2 1594 aa22.48■■□□□ 1.19
HMGCL-202ENST00000374487 NACADO15069 1562 aa22.45■■□□□ 1.18
HMGCL-202ENST00000374487 MYO15BQ96JP2 1530 aa22.25■■□□□ 1.15
HMGCL-202ENST00000374487 DCAF1Q9Y4B6 1507 aa22.21■■□□□ 1.15
HMGCL-202ENST00000374487 PABPN1Q86U42 306 aaKnown RBP eCLIP22.12■■□□□ 1.13
HMGCL-202ENST00000374487 UNC13AQ9UPW8 1703 aa22.05■■□□□ 1.12
HMGCL-202ENST00000374487 SCRIBQ14160 1630 aa21.97■■□□□ 1.11
HMGCL-202ENST00000374487 BICRAQ9NZM4 1560 aa21.91■■□□□ 1.1
HMGCL-202ENST00000374487 DNAJC5BQ9UF47 199 aa21.71■■□□□ 1.07
HMGCL-202ENST00000374487 SHROOM4Q9ULL8 1493 aa21.64■■□□□ 1.06
HMGCL-202ENST00000374487 EIF4G1Q04637 1599 aaKnown RBP21.3■■□□□ 1
HMGCL-202ENST00000374487 CC2D2AQ9P2K1 1620 aa21.23■□□□□ 0.99
HMGCL-202ENST00000374487 CECR2Q9BXF3 1484 aa21.17■□□□□ 0.98
HMGCL-202ENST00000374487 SUPT5HO00267 1087 aaKnown RBP21.13■□□□□ 0.97
HMGCL-202ENST00000374487 SMARCA4P51532 1647 aa20.94■□□□□ 0.94
HMGCL-202ENST00000374487 MROH2BQ7Z745 1585 aa20.9■□□□□ 0.94
HMGCL-202ENST00000374487 BAZ1AQ9NRL2 1556 aaPredicted RBP20.87■□□□□ 0.93
HMGCL-202ENST00000374487 ATAD2BQ9ULI0 1458 aa20.84■□□□□ 0.93
HMGCL-202ENST00000374487 NCAPD3P42695 1498 aa20.77■□□□□ 0.92
HMGCL-202ENST00000374487 SMARCA2P51531 1590 aa20.72■□□□□ 0.91
HMGCL-202ENST00000374487 WIZO95785 1651 aa20.67■□□□□ 0.9
HMGCL-202ENST00000374487 RSF1Q96T23 1441 aaPredicted RBP20.66■□□□□ 0.9
HMGCL-202ENST00000374487 BAZ1BQ9UIG0 1483 aaKnown RBP20.65■□□□□ 0.9
HMGCL-202ENST00000374487 PEG3Q9GZU2 1588 aa20.65■□□□□ 0.9
HMGCL-202ENST00000374487 HMGXB3Q12766 1538 aa20.62■□□□□ 0.89
HMGCL-202ENST00000374487 NESP48681 1621 aa20.43■□□□□ 0.86
HMGCL-202ENST00000374487 CHIC1Q5VXU3 224 aa20.39■□□□□ 0.85
HMGCL-202ENST00000374487 TOP2AP11388 1531 aaKnown RBP20.35■□□□□ 0.85
HMGCL-202ENST00000374487 ERCC6Q03468 1493 aa20.21■□□□□ 0.83
HMGCL-202ENST00000374487 CADPSQ9ULU8 1353 aa20.2■□□□□ 0.82
HMGCL-202ENST00000374487 CCDC88BA6NC98 1476 aa20.2■□□□□ 0.82
HMGCL-202ENST00000374487 LAMC3Q9Y6N6 1575 aa20.17■□□□□ 0.82
HMGCL-202ENST00000374487 CFTRP13569 1480 aa20.08■□□□□ 0.81
HMGCL-202ENST00000374487 KIF21AQ7Z4S6 1674 aa20.08■□□□□ 0.8
HMGCL-202ENST00000374487 PDS5BQ9NTI5 1447 aa20.06■□□□□ 0.8
HMGCL-202ENST00000374487 FANCD2Q9BXW9 1451 aa19.99■□□□□ 0.79
HMGCL-202ENST00000374487 THOC2Q8NI27 1593 aaKnown RBP19.97■□□□□ 0.79
HMGCL-202ENST00000374487 CEP164Q9UPV0 1460 aa19.92■□□□□ 0.78
HMGCL-202ENST00000374487 MRC2Q9UBG0 1479 aa19.88■□□□□ 0.77
HMGCL-202ENST00000374487 CUX2O14529 1486 aa19.88■□□□□ 0.77
HMGCL-202ENST00000374487 URB2Q14146 1524 aaKnown RBP19.82■□□□□ 0.76
HMGCL-202ENST00000374487 PRDM2Q13029 1718 aa19.81■□□□□ 0.76
HMGCL-202ENST00000374487 WDR62O43379 1518 aa19.8■□□□□ 0.76
HMGCL-202ENST00000374487 TRIM41Q8WV44 630 aa19.77■□□□□ 0.75
HMGCL-202ENST00000374487 LOC105371045A0A1W2PR82 267 aa19.73■□□□□ 0.75
HMGCL-202ENST00000374487 TOPBP1Q92547 1522 aa19.67■□□□□ 0.74
HMGCL-202ENST00000374487 DNMBPQ6XZF7 1577 aa19.6■□□□□ 0.73
HMGCL-202ENST00000374487 CUX1P39880 1505 aa19.58■□□□□ 0.72
HMGCL-202ENST00000374487 ABCC8Q09428 1581 aa19.54■□□□□ 0.72
HMGCL-202ENST00000374487 ZNF608Q9ULD9 1512 aaPredicted RBP19.54■□□□□ 0.72
HMGCL-202ENST00000374487 POLA1P09884 1462 aaPredicted RBP19.52■□□□□ 0.72
HMGCL-202ENST00000374487 RAD54L2Q9Y4B4 1467 aa19.52■□□□□ 0.72
HMGCL-202ENST00000374487 FAM9AQ8IZU1 332 aaPredicted RBP19.51■□□□□ 0.71
HMGCL-202ENST00000374487 FGD5Q6ZNL6 1462 aa19.49■□□□□ 0.71
HMGCL-202ENST00000374487 IFT140Q96RY7 1462 aa19.48■□□□□ 0.71
HMGCL-202ENST00000374487 SOGA1O94964 1423 aa19.45■□□□□ 0.7
HMGCL-202ENST00000374487 TARBP1Q13395 1621 aaKnown RBP19.44■□□□□ 0.7
HMGCL-202ENST00000374487 WRNQ14191 1432 aaPredicted RBP eCLIP19.44■□□□□ 0.7
HMGCL-202ENST00000374487 AQRO60306 1485 aaKnown RBP eCLIP19.44■□□□□ 0.7
HMGCL-202ENST00000374487 SYNJ1O43426 1573 aa19.43■□□□□ 0.7
HMGCL-202ENST00000374487 PCGF6Q9BYE7 350 aa19.43■□□□□ 0.7
HMGCL-202ENST00000374487 TDRD9Q8NDG6 1382 aaKnown RBP19.42■□□□□ 0.7
HMGCL-202ENST00000374487 DNAJC5Q9H3Z4 198 aa19.36■□□□□ 0.69
HMGCL-202ENST00000374487 EIF4G3O43432 1585 aaKnown RBP19.36■□□□□ 0.69
HMGCL-202ENST00000374487 TOP2BQ02880 1626 aa19.34■□□□□ 0.69
HMGCL-202ENST00000374487 BIVM-ERCC5R4GMW8 1640 aa19.31■□□□□ 0.68
HMGCL-202ENST00000374487 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
HMGCL-202ENST00000374487 WDR97A6NE52 1622 aa19.25■□□□□ 0.67
HMGCL-202ENST00000374487 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
HMGCL-202ENST00000374487 FBLN2P98095 1184 aa19.23■□□□□ 0.67
HMGCL-202ENST00000374487 HRCP23327 699 aa19.21■□□□□ 0.67
HMGCL-202ENST00000374487 GAPVD1Q14C86 1478 aa19.2■□□□□ 0.66
HMGCL-202ENST00000374487 TRIM26Q12899 539 aaPredicted RBP19.2■□□□□ 0.66
HMGCL-202ENST00000374487 SNAPC4Q5SXM2 1469 aa19.19■□□□□ 0.66
HMGCL-202ENST00000374487 OSCARQ8IYS5 282 aa19.18■□□□□ 0.66
HMGCL-202ENST00000374487 ABCA5Q8WWZ7 1642 aa19.16■□□□□ 0.66
HMGCL-202ENST00000374487 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
HMGCL-202ENST00000374487 PBRM1Q86U86 1689 aa19.12■□□□□ 0.65
HMGCL-202ENST00000374487 CHD1O14646 1710 aa19.11■□□□□ 0.65
HMGCL-202ENST00000374487 CHMP7Q8WUX9 453 aaPredicted RBP19.1■□□□□ 0.65
HMGCL-202ENST00000374487 MAGI1Q96QZ7 1491 aaPredicted RBP19.06■□□□□ 0.64
HMGCL-202ENST00000374487 SYNJ2O15056 1496 aa19.03■□□□□ 0.64
HMGCL-202ENST00000374487 RUSC2Q8N2Y8 1516 aa19.03■□□□□ 0.64
HMGCL-202ENST00000374487 EEA1Q15075 1411 aa19■□□□□ 0.63
HMGCL-202ENST00000374487 IGF1RP08069 1367 aa18.99■□□□□ 0.63
HMGCL-202ENST00000374487 KIF27Q86VH2 1401 aa18.99■□□□□ 0.63
HMGCL-202ENST00000374487 ADAMTS12P58397 1594 aa18.98■□□□□ 0.63
HMGCL-202ENST00000374487 CSRNP3Q8WYN3 585 aa18.98■□□□□ 0.63
HMGCL-202ENST00000374487 ERICH3Q5RHP9 1530 aa18.97■□□□□ 0.63
HMGCL-202ENST00000374487 FHAD1B1AJZ9 1412 aa18.95■□□□□ 0.62
HMGCL-202ENST00000374487 GRIN2AQ12879 1464 aa18.94■□□□□ 0.62
HMGCL-202ENST00000374487 CLASP1Q7Z460 1538 aa18.88■□□□□ 0.61
HMGCL-202ENST00000374487 CEP170Q5SW79 1584 aa18.88■□□□□ 0.61
HMGCL-202ENST00000374487 UBTFP17480 764 aaKnown RBP18.88■□□□□ 0.61
HMGCL-202ENST00000374487 RIMBP3CA6NJZ7 1639 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms