RNA–Protein interactions for RNA: ENST00000374339.4

PTPN20-202, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPN20, Length 1,388 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-202ENST00000374339 NISCHQ9Y2I1 1504 aa22.34■■□□□ 1.17
PTPN20-202ENST00000374339 AEBP2Q6ZN18 517 aaPredicted RBP22.22■■□□□ 1.15
PTPN20-202ENST00000374339 CHIC1Q5VXU3 224 aa20.95■□□□□ 0.94
PTPN20-202ENST00000374339 CCDC180Q9P1Z9 1646 aa19.67■□□□□ 0.74
PTPN20-202ENST00000374339 SENP3Q9H4L4 574 aaPredicted RBP18.99■□□□□ 0.63
PTPN20-202ENST00000374339 ZCCHC6Q5VYS8 1495 aaKnown RBP18.74■□□□□ 0.59
PTPN20-202ENST00000374339 PHF23Q9BUL5 403 aaPredicted RBP18.7■□□□□ 0.58
PTPN20-202ENST00000374339 ABCC9O60706 1549 aa18.59■□□□□ 0.57
PTPN20-202ENST00000374339 DCAF1Q9Y4B6 1507 aa18.54■□□□□ 0.56
PTPN20-202ENST00000374339 MYO15BQ96JP2 1530 aa18.41■□□□□ 0.54
PTPN20-202ENST00000374339 DCAF8L2P0C7V8 631 aa18.41■□□□□ 0.54
PTPN20-202ENST00000374339 NACADO15069 1562 aa18.32■□□□□ 0.52
PTPN20-202ENST00000374339 RB1CC1Q8TDY2 1594 aa18.21■□□□□ 0.51
PTPN20-202ENST00000374339 SHROOM4Q9ULL8 1493 aa17.98■□□□□ 0.47
PTPN20-202ENST00000374339 SCRIBQ14160 1630 aa17.94■□□□□ 0.46
PTPN20-202ENST00000374339 UNC13AQ9UPW8 1703 aa17.79■□□□□ 0.44
PTPN20-202ENST00000374339 FOXD1Q16676 465 aa17.75■□□□□ 0.43
PTPN20-202ENST00000374339 BICRAQ9NZM4 1560 aa17.58■□□□□ 0.4
PTPN20-202ENST00000374339 PABPN1Q86U42 306 aaKnown RBP eCLIP17.44■□□□□ 0.38
PTPN20-202ENST00000374339 BAZ1AQ9NRL2 1556 aaPredicted RBP17.31■□□□□ 0.36
PTPN20-202ENST00000374339 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
PTPN20-202ENST00000374339 SUPT5HO00267 1087 aaKnown RBP17.23■□□□□ 0.35
PTPN20-202ENST00000374339 SMARCA4P51532 1647 aa17.23■□□□□ 0.35
PTPN20-202ENST00000374339 RSF1Q96T23 1441 aaPredicted RBP17.22■□□□□ 0.35
PTPN20-202ENST00000374339 MROH2BQ7Z745 1585 aa17.21■□□□□ 0.35
PTPN20-202ENST00000374339 EIF4G1Q04637 1599 aaKnown RBP17.09■□□□□ 0.33
PTPN20-202ENST00000374339 WIZO95785 1651 aa17.08■□□□□ 0.32
PTPN20-202ENST00000374339 PEG3Q9GZU2 1588 aa17.06■□□□□ 0.32
PTPN20-202ENST00000374339 SMARCA2P51531 1590 aa17.02■□□□□ 0.31
PTPN20-202ENST00000374339 ATAD2BQ9ULI0 1458 aa16.95■□□□□ 0.3
PTPN20-202ENST00000374339 TOP2AP11388 1531 aaKnown RBP16.95■□□□□ 0.3
PTPN20-202ENST00000374339 BAZ1BQ9UIG0 1483 aaKnown RBP16.88■□□□□ 0.29
PTPN20-202ENST00000374339 HMGXB3Q12766 1538 aa16.88■□□□□ 0.29
PTPN20-202ENST00000374339 CC2D2AQ9P2K1 1620 aa16.87■□□□□ 0.29
PTPN20-202ENST00000374339 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
PTPN20-202ENST00000374339 POTEDQ86YR6 584 aa16.85■□□□□ 0.29
PTPN20-202ENST00000374339 PLPPR3Q6T4P5 718 aa16.76■□□□□ 0.27
PTPN20-202ENST00000374339 CCDC88BA6NC98 1476 aa16.71■□□□□ 0.27
PTPN20-202ENST00000374339 MSH5O43196 834 aa16.71■□□□□ 0.27
PTPN20-202ENST00000374339 PIAS4Q8N2W9 510 aaPredicted RBP16.52■□□□□ 0.24
PTPN20-202ENST00000374339 DNAJC5BQ9UF47 199 aa16.45■□□□□ 0.22
PTPN20-202ENST00000374339 PRDM2Q13029 1718 aa16.44■□□□□ 0.22
PTPN20-202ENST00000374339 CFTRP13569 1480 aa16.44■□□□□ 0.22
PTPN20-202ENST00000374339 CADPSQ9ULU8 1353 aa16.4■□□□□ 0.22
PTPN20-202ENST00000374339 LAMC3Q9Y6N6 1575 aa16.37■□□□□ 0.21
PTPN20-202ENST00000374339 PPP6R1Q9UPN7 881 aa16.37■□□□□ 0.21
PTPN20-202ENST00000374339 ADRA2BP18089 450 aa16.33■□□□□ 0.2
PTPN20-202ENST00000374339 ABCC8Q09428 1581 aa16.29■□□□□ 0.2
PTPN20-202ENST00000374339 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
PTPN20-202ENST00000374339 NESP48681 1621 aa16.25■□□□□ 0.19
PTPN20-202ENST00000374339 WRNQ14191 1432 aaPredicted RBP eCLIP16.25■□□□□ 0.19
PTPN20-202ENST00000374339 FANCD2Q9BXW9 1451 aa16.22■□□□□ 0.19
PTPN20-202ENST00000374339 PDS5BQ9NTI5 1447 aa16.22■□□□□ 0.19
PTPN20-202ENST00000374339 TOP2BQ02880 1626 aa16.17■□□□□ 0.18
PTPN20-202ENST00000374339 BIVM-ERCC5R4GMW8 1640 aa16.17■□□□□ 0.18
PTPN20-202ENST00000374339 SYNJ1O43426 1573 aa16.17■□□□□ 0.18
PTPN20-202ENST00000374339 CEP164Q9UPV0 1460 aa16.17■□□□□ 0.18
PTPN20-202ENST00000374339 KIF21AQ7Z4S6 1674 aa16.14■□□□□ 0.17
PTPN20-202ENST00000374339 CUX1P39880 1505 aa16.12■□□□□ 0.17
PTPN20-202ENST00000374339 DNMBPQ6XZF7 1577 aa16.09■□□□□ 0.17
PTPN20-202ENST00000374339 TOPBP1Q92547 1522 aa16.03■□□□□ 0.16
PTPN20-202ENST00000374339 ERCC6Q03468 1493 aa16.02■□□□□ 0.16
PTPN20-202ENST00000374339 URB2Q14146 1524 aaKnown RBP16.01■□□□□ 0.15
PTPN20-202ENST00000374339 MRC2Q9UBG0 1479 aa16.01■□□□□ 0.15
PTPN20-202ENST00000374339 EEA1Q15075 1411 aa16■□□□□ 0.15
PTPN20-202ENST00000374339 FGD5Q6ZNL6 1462 aa15.98■□□□□ 0.15
PTPN20-202ENST00000374339 WDR62O43379 1518 aa15.93■□□□□ 0.14
PTPN20-202ENST00000374339 SOGA1O94964 1423 aa15.93■□□□□ 0.14
PTPN20-202ENST00000374339 POLA1P09884 1462 aaPredicted RBP15.93■□□□□ 0.14
PTPN20-202ENST00000374339 THOC2Q8NI27 1593 aaKnown RBP15.92■□□□□ 0.14
PTPN20-202ENST00000374339 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
PTPN20-202ENST00000374339 KIF27Q86VH2 1401 aa15.88■□□□□ 0.13
PTPN20-202ENST00000374339 ABCA10Q8WWZ4 1543 aa15.86■□□□□ 0.13
PTPN20-202ENST00000374339 WDR97A6NE52 1622 aa15.85■□□□□ 0.13
PTPN20-202ENST00000374339 RUSC2Q8N2Y8 1516 aa15.85■□□□□ 0.13
PTPN20-202ENST00000374339 CUX2O14529 1486 aa15.84■□□□□ 0.13
PTPN20-202ENST00000374339 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
PTPN20-202ENST00000374339 RAD54L2Q9Y4B4 1467 aa15.82■□□□□ 0.12
PTPN20-202ENST00000374339 TARBP1Q13395 1621 aaKnown RBP15.82■□□□□ 0.12
PTPN20-202ENST00000374339 IFT140Q96RY7 1462 aa15.79■□□□□ 0.12
PTPN20-202ENST00000374339 KIF21BO75037 1637 aa15.77■□□□□ 0.12
PTPN20-202ENST00000374339 ABCA5Q8WWZ7 1642 aa15.76■□□□□ 0.11
PTPN20-202ENST00000374339 LOC105371045A0A1W2PR82 267 aa15.73■□□□□ 0.11
PTPN20-202ENST00000374339 GOLGA3Q08378 1498 aa15.72■□□□□ 0.11
PTPN20-202ENST00000374339 ERICH3Q5RHP9 1530 aa15.71■□□□□ 0.11
PTPN20-202ENST00000374339 GAPVD1Q14C86 1478 aa15.71■□□□□ 0.11
PTPN20-202ENST00000374339 CUL7Q14999 1698 aa15.7■□□□□ 0.1
PTPN20-202ENST00000374339 PRXQ9BXM0 1461 aa15.7■□□□□ 0.1
PTPN20-202ENST00000374339 IGF1RP08069 1367 aa15.7■□□□□ 0.1
PTPN20-202ENST00000374339 TDRD9Q8NDG6 1382 aaKnown RBP15.69■□□□□ 0.1
PTPN20-202ENST00000374339 PBRM1Q86U86 1689 aa15.68■□□□□ 0.1
PTPN20-202ENST00000374339 EIF4G3O43432 1585 aaKnown RBP15.65■□□□□ 0.1
PTPN20-202ENST00000374339 GRIN2BQ13224 1484 aa15.64■□□□□ 0.09
PTPN20-202ENST00000374339 CARMIL1Q5VZK9 1371 aa15.63■□□□□ 0.09
PTPN20-202ENST00000374339 RAPGEF2Q9Y4G8 1499 aa15.63■□□□□ 0.09
PTPN20-202ENST00000374339 ZNF608Q9ULD9 1512 aaPredicted RBP15.63■□□□□ 0.09
PTPN20-202ENST00000374339 AQRO60306 1485 aaKnown RBP eCLIP15.62■□□□□ 0.09
PTPN20-202ENST00000374339 EHMT2Q96KQ7 1210 aa15.62■□□□□ 0.09
PTPN20-202ENST00000374339 TNIKQ9UKE5 1360 aa15.61■□□□□ 0.09
PTPN20-202ENST00000374339 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms