RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 NISCHQ9Y2I1 1504 aa19.93■□□□□ 0.78
UPF2-202ENST00000357604 CCDC180Q9P1Z9 1646 aa17.62■□□□□ 0.41
UPF2-202ENST00000357604 DCAF8L2P0C7V8 631 aa17.54■□□□□ 0.4
UPF2-202ENST00000357604 ABCC9O60706 1549 aa17.2■□□□□ 0.34
UPF2-202ENST00000357604 RB1CC1Q8TDY2 1594 aa16.76■□□□□ 0.27
UPF2-202ENST00000357604 NACADO15069 1562 aa16.69■□□□□ 0.26
UPF2-202ENST00000357604 ZCCHC6Q5VYS8 1495 aaKnown RBP16.59■□□□□ 0.25
UPF2-202ENST00000357604 DCAF1Q9Y4B6 1507 aa16.46■□□□□ 0.23
UPF2-202ENST00000357604 MYO15BQ96JP2 1530 aa16.42■□□□□ 0.22
UPF2-202ENST00000357604 SHROOM4Q9ULL8 1493 aa16.38■□□□□ 0.21
UPF2-202ENST00000357604 SCRIBQ14160 1630 aa16.25■□□□□ 0.19
UPF2-202ENST00000357604 PABPN1Q86U42 306 aaKnown RBP eCLIP16.23■□□□□ 0.19
UPF2-202ENST00000357604 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.12
UPF2-202ENST00000357604 BAZ1AQ9NRL2 1556 aaPredicted RBP15.64■□□□□ 0.09
UPF2-202ENST00000357604 SMARCA2P51531 1590 aa15.58■□□□□ 0.08
UPF2-202ENST00000357604 UNC13AQ9UPW8 1703 aa15.54■□□□□ 0.08
UPF2-202ENST00000357604 BAZ1BQ9UIG0 1483 aaKnown RBP15.52■□□□□ 0.08
UPF2-202ENST00000357604 BICRAQ9NZM4 1560 aa15.5■□□□□ 0.07
UPF2-202ENST00000357604 CECR2Q9BXF3 1484 aa15.49■□□□□ 0.07
UPF2-202ENST00000357604 EIF4G1Q04637 1599 aaKnown RBP15.47■□□□□ 0.07
UPF2-202ENST00000357604 SMARCA4P51532 1647 aa15.41■□□□□ 0.06
UPF2-202ENST00000357604 CC2D2AQ9P2K1 1620 aa15.36■□□□□ 0.05
UPF2-202ENST00000357604 ERCC6Q03468 1493 aa15.29■□□□□ 0.04
UPF2-202ENST00000357604 RSF1Q96T23 1441 aaPredicted RBP15.29■□□□□ 0.04
UPF2-202ENST00000357604 ATAD2BQ9ULI0 1458 aa15.28■□□□□ 0.04
UPF2-202ENST00000357604 FAM9AQ8IZU1 332 aaPredicted RBP15.26■□□□□ 0.03
UPF2-202ENST00000357604 NCAPD3P42695 1498 aa15.25■□□□□ 0.03
UPF2-202ENST00000357604 MROH2BQ7Z745 1585 aa15.24■□□□□ 0.03
UPF2-202ENST00000357604 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
UPF2-202ENST00000357604 TOP2AP11388 1531 aaKnown RBP15.21■□□□□ 0.02
UPF2-202ENST00000357604 PDS5BQ9NTI5 1447 aa15.17■□□□□ 0.02
UPF2-202ENST00000357604 WIZO95785 1651 aa15.09■□□□□ 0.01
UPF2-202ENST00000357604 TRIM41Q8WV44 630 aa15.06■□□□□ 0
UPF2-202ENST00000357604 PEG3Q9GZU2 1588 aa15.03■□□□□ -0
UPF2-202ENST00000357604 CADPSQ9ULU8 1353 aa15.02■□□□□ -0
UPF2-202ENST00000357604 DNAJC5BQ9UF47 199 aa14.98□□□□□ -0.01
UPF2-202ENST00000357604 CEP164Q9UPV0 1460 aa14.96□□□□□ -0.02
UPF2-202ENST00000357604 CCDC88BA6NC98 1476 aa14.95□□□□□ -0.02
UPF2-202ENST00000357604 LAMC3Q9Y6N6 1575 aa14.92□□□□□ -0.02
UPF2-202ENST00000357604 ABCC8Q09428 1581 aa14.92□□□□□ -0.02
UPF2-202ENST00000357604 FANCD2Q9BXW9 1451 aa14.85□□□□□ -0.03
UPF2-202ENST00000357604 MRC2Q9UBG0 1479 aa14.82□□□□□ -0.04
UPF2-202ENST00000357604 CFTRP13569 1480 aa14.77□□□□□ -0.05
UPF2-202ENST00000357604 FBLN2P98095 1184 aa14.75□□□□□ -0.05
UPF2-202ENST00000357604 WRNQ14191 1432 aaPredicted RBP eCLIP14.75□□□□□ -0.05
UPF2-202ENST00000357604 CUX2O14529 1486 aa14.67□□□□□ -0.06
UPF2-202ENST00000357604 NESP48681 1621 aa14.66□□□□□ -0.06
UPF2-202ENST00000357604 CHMP7Q8WUX9 453 aaPredicted RBP14.66□□□□□ -0.06
UPF2-202ENST00000357604 UBTFP17480 764 aaKnown RBP14.65□□□□□ -0.06
UPF2-202ENST00000357604 APLP2Q06481 763 aa14.64□□□□□ -0.07
UPF2-202ENST00000357604 SOGA1O94964 1423 aa14.63□□□□□ -0.07
UPF2-202ENST00000357604 IFT140Q96RY7 1462 aa14.62□□□□□ -0.07
UPF2-202ENST00000357604 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
UPF2-202ENST00000357604 DNMBPQ6XZF7 1577 aa14.59□□□□□ -0.07
UPF2-202ENST00000357604 PRDM2Q13029 1718 aa14.56□□□□□ -0.08
UPF2-202ENST00000357604 EEA1Q15075 1411 aa14.55□□□□□ -0.08
UPF2-202ENST00000357604 EHMT2Q96KQ7 1210 aa14.55□□□□□ -0.08
UPF2-202ENST00000357604 CHIC1Q5VXU3 224 aa14.52□□□□□ -0.09
UPF2-202ENST00000357604 TOPBP1Q92547 1522 aa14.5□□□□□ -0.09
UPF2-202ENST00000357604 FGD5Q6ZNL6 1462 aa14.48□□□□□ -0.09
UPF2-202ENST00000357604 RANGAP1P46060 587 aaPredicted RBP14.47□□□□□ -0.09
UPF2-202ENST00000357604 KIF21AQ7Z4S6 1674 aa14.47□□□□□ -0.09
UPF2-202ENST00000357604 ATP1B4Q9UN42 357 aaPredicted RBP14.45□□□□□ -0.1
UPF2-202ENST00000357604 WDR62O43379 1518 aa14.45□□□□□ -0.1
UPF2-202ENST00000357604 CSRNP3Q8WYN3 585 aa14.45□□□□□ -0.1
UPF2-202ENST00000357604 NPM1P06748 294 aaKnown RBP eCLIP14.44□□□□□ -0.1
UPF2-202ENST00000357604 TTBK1Q5TCY1 1321 aaPredicted RBP14.41□□□□□ -0.1
UPF2-202ENST00000357604 OSCARQ8IYS5 282 aa14.41□□□□□ -0.1
UPF2-202ENST00000357604 GRIN2BQ13224 1484 aa14.4□□□□□ -0.1
UPF2-202ENST00000357604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.39□□□□□ -0.11
UPF2-202ENST00000357604 HNRNPUL2Q1KMD3 747 aaKnown RBP14.39□□□□□ -0.11
UPF2-202ENST00000357604 GAPVD1Q14C86 1478 aa14.39□□□□□ -0.11
UPF2-202ENST00000357604 TOP2BQ02880 1626 aa14.38□□□□□ -0.11
UPF2-202ENST00000357604 TDRD9Q8NDG6 1382 aaKnown RBP14.38□□□□□ -0.11
UPF2-202ENST00000357604 URB2Q14146 1524 aaKnown RBP14.37□□□□□ -0.11
UPF2-202ENST00000357604 WDR97A6NE52 1622 aa14.36□□□□□ -0.11
UPF2-202ENST00000357604 POLA1P09884 1462 aaPredicted RBP14.35□□□□□ -0.11
UPF2-202ENST00000357604 CUX1P39880 1505 aa14.34□□□□□ -0.11
UPF2-202ENST00000357604 CARMIL1Q5VZK9 1371 aa14.33□□□□□ -0.12
UPF2-202ENST00000357604 RAD54L2Q9Y4B4 1467 aa14.33□□□□□ -0.12
UPF2-202ENST00000357604 CARMIL2Q6F5E8 1435 aa14.3□□□□□ -0.12
UPF2-202ENST00000357604 THOC2Q8NI27 1593 aaKnown RBP14.29□□□□□ -0.12
UPF2-202ENST00000357604 BIVM-ERCC5R4GMW8 1640 aa14.29□□□□□ -0.12
UPF2-202ENST00000357604 FHAD1B1AJZ9 1412 aa14.29□□□□□ -0.12
UPF2-202ENST00000357604 ABCA10Q8WWZ4 1543 aa14.28□□□□□ -0.12
UPF2-202ENST00000357604 MAGI1Q96QZ7 1491 aaPredicted RBP14.28□□□□□ -0.12
UPF2-202ENST00000357604 AQRO60306 1485 aaKnown RBP eCLIP14.28□□□□□ -0.122e-6■□□□□ 10.6
UPF2-202ENST00000357604 GOLGA3Q08378 1498 aa14.28□□□□□ -0.12
UPF2-202ENST00000357604 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
UPF2-202ENST00000357604 RAPGEF2Q9Y4G8 1499 aa14.25□□□□□ -0.13
UPF2-202ENST00000357604 SYNJ1O43426 1573 aa14.24□□□□□ -0.13
UPF2-202ENST00000357604 SNAPC4Q5SXM2 1469 aa14.24□□□□□ -0.13
UPF2-202ENST00000357604 ERICH3Q5RHP9 1530 aa14.21□□□□□ -0.13
UPF2-202ENST00000357604 CUL7Q14999 1698 aa14.2□□□□□ -0.14
UPF2-202ENST00000357604 SYNJ2O15056 1496 aa14.2□□□□□ -0.14
UPF2-202ENST00000357604 EIF4G3O43432 1585 aaKnown RBP14.13□□□□□ -0.15
UPF2-202ENST00000357604 MYT1LQ9UL68 1186 aa14.13□□□□□ -0.15
UPF2-202ENST00000357604 P3H3Q8IVL6 736 aa14.1□□□□□ -0.15
UPF2-202ENST00000357604 IGF1RP08069 1367 aa14.09□□□□□ -0.15
UPF2-202ENST00000357604 ZNF608Q9ULD9 1512 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms