RNA–Protein interactions for RNA: ENST00000355500.1

COMMD9-202, Transcript of COMM domain containing 9, humanhuman

TSL 2

Gene COMMD9, Length 2,738 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD9-202ENST00000355500 NISCHQ9Y2I1 1504 aa17.79■□□□□ 0.44
COMMD9-202ENST00000355500 CCDC180Q9P1Z9 1646 aa16.32■□□□□ 0.2
COMMD9-202ENST00000355500 ABCC9O60706 1549 aa15.63■□□□□ 0.09
COMMD9-202ENST00000355500 MYO15BQ96JP2 1530 aa15.33■□□□□ 0.05
COMMD9-202ENST00000355500 RB1CC1Q8TDY2 1594 aa15.33■□□□□ 0.05
COMMD9-202ENST00000355500 NACADO15069 1562 aa15.31■□□□□ 0.04
COMMD9-202ENST00000355500 SLC24A1O60721 1099 aa15.21■□□□□ 0.02
COMMD9-202ENST00000355500 SHROOM4Q9ULL8 1493 aa15.07■□□□□ 0
COMMD9-202ENST00000355500 DCAF1Q9Y4B6 1507 aa15.05■□□□□ -0
COMMD9-202ENST00000355500 UNC13AQ9UPW8 1703 aa14.95□□□□□ -0.02
COMMD9-202ENST00000355500 ZCCHC6Q5VYS8 1495 aaKnown RBP14.83□□□□□ -0.04
COMMD9-202ENST00000355500 BICRAQ9NZM4 1560 aa14.8□□□□□ -0.04
COMMD9-202ENST00000355500 DNAJC5BQ9UF47 199 aa14.57□□□□□ -0.08
COMMD9-202ENST00000355500 CHIC1Q5VXU3 224 aa14.54□□□□□ -0.08
COMMD9-202ENST00000355500 EIF4G1Q04637 1599 aaKnown RBP14.4□□□□□ -0.1
COMMD9-202ENST00000355500 CC2D2AQ9P2K1 1620 aa14.39□□□□□ -0.11
COMMD9-202ENST00000355500 PABPN1Q86U42 306 aaKnown RBP eCLIP14.32□□□□□ -0.12
COMMD9-202ENST00000355500 SCRIBQ14160 1630 aa14.31□□□□□ -0.12
COMMD9-202ENST00000355500 CECR2Q9BXF3 1484 aa14.26□□□□□ -0.13
COMMD9-202ENST00000355500 MYT1Q01538 1121 aa14.21□□□□□ -0.14
COMMD9-202ENST00000355500 DCAF8L2P0C7V8 631 aa14.2□□□□□ -0.14
COMMD9-202ENST00000355500 PELP1Q8IZL8 1130 aaKnown RBP14.1□□□□□ -0.15
COMMD9-202ENST00000355500 PRKCSHP14314 528 aaPredicted RBP14.09□□□□□ -0.15
COMMD9-202ENST00000355500 HMGXB3Q12766 1538 aa14.04□□□□□ -0.16
COMMD9-202ENST00000355500 NCAPD3P42695 1498 aa14.03□□□□□ -0.16
COMMD9-202ENST00000355500 DAXXQ9UER7 740 aaPredicted RBP14.03□□□□□ -0.16
COMMD9-202ENST00000355500 TTBK1Q5TCY1 1321 aaPredicted RBP14.02□□□□□ -0.16
COMMD9-202ENST00000355500 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
COMMD9-202ENST00000355500 SMARCA2P51531 1590 aa13.98□□□□□ -0.17
COMMD9-202ENST00000355500 CUX2O14529 1486 aa13.97□□□□□ -0.17
COMMD9-202ENST00000355500 SMARCA4P51532 1647 aa13.91□□□□□ -0.18
COMMD9-202ENST00000355500 APLP2Q06481 763 aa13.89□□□□□ -0.19
COMMD9-202ENST00000355500 AEBP2Q6ZN18 517 aaPredicted RBP13.88□□□□□ -0.19
COMMD9-202ENST00000355500 BAZ1AQ9NRL2 1556 aaPredicted RBP13.87□□□□□ -0.19
COMMD9-202ENST00000355500 ATAD2BQ9ULI0 1458 aa13.85□□□□□ -0.19
COMMD9-202ENST00000355500 LAMC3Q9Y6N6 1575 aa13.78□□□□□ -0.2
COMMD9-202ENST00000355500 EHMT2Q96KQ7 1210 aa13.75□□□□□ -0.21
COMMD9-202ENST00000355500 ERICH6Q7L0X2 663 aa13.71□□□□□ -0.21
COMMD9-202ENST00000355500 THOC2Q8NI27 1593 aaKnown RBP13.68□□□□□ -0.22
COMMD9-202ENST00000355500 DNAJC5Q9H3Z4 198 aa13.67□□□□□ -0.22
COMMD9-202ENST00000355500 BAZ1BQ9UIG0 1483 aaKnown RBP13.67□□□□□ -0.22
COMMD9-202ENST00000355500 SUPT5HO00267 1087 aaKnown RBP13.65□□□□□ -0.22
COMMD9-202ENST00000355500 RSF1Q96T23 1441 aaPredicted RBP13.61□□□□□ -0.23
COMMD9-202ENST00000355500 ERCC6Q03468 1493 aa13.59□□□□□ -0.23
COMMD9-202ENST00000355500 PLPPR3Q6T4P5 718 aa13.55□□□□□ -0.24
COMMD9-202ENST00000355500 PDS5BQ9NTI5 1447 aa13.55□□□□□ -0.24
COMMD9-202ENST00000355500 PRDM2Q13029 1718 aa13.54□□□□□ -0.24
COMMD9-202ENST00000355500 MROH2BQ7Z745 1585 aa13.53□□□□□ -0.24
COMMD9-202ENST00000355500 WDR62O43379 1518 aa13.52□□□□□ -0.25
COMMD9-202ENST00000355500 KIF21AQ7Z4S6 1674 aa13.51□□□□□ -0.25
COMMD9-202ENST00000355500 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
COMMD9-202ENST00000355500 NCBP3Q53F19 620 aaKnown RBP13.45□□□□□ -0.26
COMMD9-202ENST00000355500 MRC2Q9UBG0 1479 aa13.44□□□□□ -0.26
COMMD9-202ENST00000355500 NESP48681 1621 aa13.42□□□□□ -0.26
COMMD9-202ENST00000355500 RTN4Q9NQC3 1192 aaKnown RBP13.41□□□□□ -0.26
COMMD9-202ENST00000355500 TOP2AP11388 1531 aaKnown RBP13.41□□□□□ -0.26
COMMD9-202ENST00000355500 CFTRP13569 1480 aa13.38□□□□□ -0.27
COMMD9-202ENST00000355500 WIZO95785 1651 aa13.36□□□□□ -0.27
COMMD9-202ENST00000355500 CEP164Q9UPV0 1460 aa13.32□□□□□ -0.28
COMMD9-202ENST00000355500 WDR97A6NE52 1622 aa13.29□□□□□ -0.28
COMMD9-202ENST00000355500 ABCC8Q09428 1581 aa13.27□□□□□ -0.28
COMMD9-202ENST00000355500 PHF23Q9BUL5 403 aaPredicted RBP13.26□□□□□ -0.29
COMMD9-202ENST00000355500 FANCD2Q9BXW9 1451 aa13.25□□□□□ -0.29
COMMD9-202ENST00000355500 IFT140Q96RY7 1462 aa13.16□□□□□ -0.3
COMMD9-202ENST00000355500 URB2Q14146 1524 aaKnown RBP13.15□□□□□ -0.3
COMMD9-202ENST00000355500 DNMBPQ6XZF7 1577 aa13.12□□□□□ -0.31
COMMD9-202ENST00000355500 EIF5BO60841 1220 aaKnown RBP13.1□□□□□ -0.31
COMMD9-202ENST00000355500 CCDC88BA6NC98 1476 aa13.09□□□□□ -0.31
COMMD9-202ENST00000355500 TOPBP1Q92547 1522 aa13.05□□□□□ -0.32
COMMD9-202ENST00000355500 TARBP1Q13395 1621 aaKnown RBP13.04□□□□□ -0.32
COMMD9-202ENST00000355500 TIMELESSQ9UNS1 1208 aa13□□□□□ -0.33
COMMD9-202ENST00000355500 EIF4G3O43432 1585 aaKnown RBP12.99□□□□□ -0.33
COMMD9-202ENST00000355500 ARXQ96QS3 562 aa12.98□□□□□ -0.33
COMMD9-202ENST00000355500 OSCARQ8IYS5 282 aa12.96□□□□□ -0.33
COMMD9-202ENST00000355500 TRIM41Q8WV44 630 aa12.96□□□□□ -0.34
COMMD9-202ENST00000355500 EEA1Q15075 1411 aa12.95□□□□□ -0.34
COMMD9-202ENST00000355500 RIMBP3CA6NJZ7 1639 aa12.94□□□□□ -0.34
COMMD9-202ENST00000355500 RIMBP3BA6NNM3 1639 aa12.94□□□□□ -0.34
COMMD9-202ENST00000355500 RIMBP3Q9UFD9 1639 aa12.94□□□□□ -0.34
COMMD9-202ENST00000355500 CHD1O14646 1710 aa12.9□□□□□ -0.34
COMMD9-202ENST00000355500 MAGI1Q96QZ7 1491 aaPredicted RBP12.89□□□□□ -0.35
COMMD9-202ENST00000355500 BCL11AQ9H165 835 aa12.88□□□□□ -0.35
COMMD9-202ENST00000355500 CLASP1Q7Z460 1538 aa12.87□□□□□ -0.35
COMMD9-202ENST00000355500 POLA1P09884 1462 aaPredicted RBP12.87□□□□□ -0.35
COMMD9-202ENST00000355500 PLEKHG5O94827 1062 aa12.87□□□□□ -0.35
COMMD9-202ENST00000355500 KLHL34Q8N239 644 aa12.86□□□□□ -0.35
COMMD9-202ENST00000355500 ARHGEF11O15085 1522 aa12.86□□□□□ -0.35
COMMD9-202ENST00000355500 ZNF608Q9ULD9 1512 aaPredicted RBP12.85□□□□□ -0.35
COMMD9-202ENST00000355500 BIVM-ERCC5R4GMW8 1640 aa12.84□□□□□ -0.35
COMMD9-202ENST00000355500 SYNJ1O43426 1573 aa12.83□□□□□ -0.36
COMMD9-202ENST00000355500 PBRM1Q86U86 1689 aa12.81□□□□□ -0.36
COMMD9-202ENST00000355500 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
COMMD9-202ENST00000355500 CSRNP3Q8WYN3 585 aa12.81□□□□□ -0.36
COMMD9-202ENST00000355500 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
COMMD9-202ENST00000355500 WRNQ14191 1432 aaPredicted RBP eCLIP12.8□□□□□ -0.36
COMMD9-202ENST00000355500 TOP2BQ02880 1626 aa12.79□□□□□ -0.36
COMMD9-202ENST00000355500 GRIN2BQ13224 1484 aa12.78□□□□□ -0.36
COMMD9-202ENST00000355500 ABCA10Q8WWZ4 1543 aa12.78□□□□□ -0.36
COMMD9-202ENST00000355500 KCNA4P22459 653 aa12.78□□□□□ -0.36
COMMD9-202ENST00000355500 RANGAP1P46060 587 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms