RNA–Protein interactions for RNA: ENST00000346569.6

ECM1-201, Transcript of extracellular matrix protein 1, humanhuman

TSL 1 (best) BASIC

Gene ECM1, Length 1,444 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-201ENST00000346569 NISCHQ9Y2I1 1504 aa25.13■■□□□ 1.61
ECM1-201ENST00000346569 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
ECM1-201ENST00000346569 ABCC9O60706 1549 aa21.15■□□□□ 0.98
ECM1-201ENST00000346569 ZCCHC6Q5VYS8 1495 aaKnown RBP21.07■□□□□ 0.96
ECM1-201ENST00000346569 DCAF1Q9Y4B6 1507 aa20.81■□□□□ 0.92
ECM1-201ENST00000346569 DCAF8L2P0C7V8 631 aa20.78■□□□□ 0.92
ECM1-201ENST00000346569 MYO15BQ96JP2 1530 aa20.62■□□□□ 0.89
ECM1-201ENST00000346569 NACADO15069 1562 aa20.46■□□□□ 0.87
ECM1-201ENST00000346569 SHROOM4Q9ULL8 1493 aa20.37■□□□□ 0.85
ECM1-201ENST00000346569 RB1CC1Q8TDY2 1594 aa20.27■□□□□ 0.84
ECM1-201ENST00000346569 SCRIBQ14160 1630 aa20.08■□□□□ 0.8
ECM1-201ENST00000346569 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.77
ECM1-201ENST00000346569 BICRAQ9NZM4 1560 aa19.71■□□□□ 0.75
ECM1-201ENST00000346569 DNAJC5BQ9UF47 199 aa19.69■□□□□ 0.74
ECM1-201ENST00000346569 PABPN1Q86U42 306 aaKnown RBP eCLIP19.68■□□□□ 0.74
ECM1-201ENST00000346569 SUPT5HO00267 1087 aaKnown RBP19.59■□□□□ 0.73
ECM1-201ENST00000346569 CECR2Q9BXF3 1484 aa19.55■□□□□ 0.72
ECM1-201ENST00000346569 RSF1Q96T23 1441 aaPredicted RBP19.49■□□□□ 0.71
ECM1-201ENST00000346569 MROH2BQ7Z745 1585 aa19.4■□□□□ 0.7
ECM1-201ENST00000346569 BAZ1AQ9NRL2 1556 aaPredicted RBP19.38■□□□□ 0.69
ECM1-201ENST00000346569 SMARCA4P51532 1647 aa19.28■□□□□ 0.68
ECM1-201ENST00000346569 WIZO95785 1651 aa19.19■□□□□ 0.66
ECM1-201ENST00000346569 EIF4G1Q04637 1599 aaKnown RBP19.18■□□□□ 0.66
ECM1-201ENST00000346569 CC2D2AQ9P2K1 1620 aa19.16■□□□□ 0.66
ECM1-201ENST00000346569 PEG3Q9GZU2 1588 aa19.11■□□□□ 0.65
ECM1-201ENST00000346569 ATAD2BQ9ULI0 1458 aa19.06■□□□□ 0.64
ECM1-201ENST00000346569 TOP2AP11388 1531 aaKnown RBP19■□□□□ 0.63
ECM1-201ENST00000346569 SMARCA2P51531 1590 aa19■□□□□ 0.63
ECM1-201ENST00000346569 NCAPD3P42695 1498 aa18.95■□□□□ 0.62
ECM1-201ENST00000346569 BAZ1BQ9UIG0 1483 aaKnown RBP18.89■□□□□ 0.61
ECM1-201ENST00000346569 CCDC88BA6NC98 1476 aa18.86■□□□□ 0.61
ECM1-201ENST00000346569 HMGXB3Q12766 1538 aa18.84■□□□□ 0.61
ECM1-201ENST00000346569 CHIC1Q5VXU3 224 aa18.79■□□□□ 0.6
ECM1-201ENST00000346569 CFTRP13569 1480 aa18.48■□□□□ 0.55
ECM1-201ENST00000346569 TRIM41Q8WV44 630 aa18.46■□□□□ 0.55
ECM1-201ENST00000346569 CADPSQ9ULU8 1353 aa18.45■□□□□ 0.54
ECM1-201ENST00000346569 ABCC8Q09428 1581 aa18.35■□□□□ 0.53
ECM1-201ENST00000346569 WRNQ14191 1432 aaPredicted RBP eCLIP18.31■□□□□ 0.52
ECM1-201ENST00000346569 NESP48681 1621 aa18.26■□□□□ 0.51
ECM1-201ENST00000346569 LAMC3Q9Y6N6 1575 aa18.24■□□□□ 0.51
ECM1-201ENST00000346569 ERCC6Q03468 1493 aa18.22■□□□□ 0.51
ECM1-201ENST00000346569 PRDM2Q13029 1718 aa18.22■□□□□ 0.51
ECM1-201ENST00000346569 CUX2O14529 1486 aa18.21■□□□□ 0.51
ECM1-201ENST00000346569 SYNJ1O43426 1573 aa18.19■□□□□ 0.5
ECM1-201ENST00000346569 FANCD2Q9BXW9 1451 aa18.18■□□□□ 0.5
ECM1-201ENST00000346569 PDS5BQ9NTI5 1447 aa18.14■□□□□ 0.49
ECM1-201ENST00000346569 TOP2BQ02880 1626 aa18.14■□□□□ 0.49
ECM1-201ENST00000346569 CUX1P39880 1505 aa18.13■□□□□ 0.49
ECM1-201ENST00000346569 BIVM-ERCC5R4GMW8 1640 aa18.11■□□□□ 0.49
ECM1-201ENST00000346569 THOC2Q8NI27 1593 aaKnown RBP18.09■□□□□ 0.49
ECM1-201ENST00000346569 FAM9AQ8IZU1 332 aaPredicted RBP18.08■□□□□ 0.49
ECM1-201ENST00000346569 SOGA1O94964 1423 aa18.07■□□□□ 0.48
ECM1-201ENST00000346569 CEP164Q9UPV0 1460 aa18.05■□□□□ 0.48
ECM1-201ENST00000346569 LOC105371045A0A1W2PR82 267 aa18.05■□□□□ 0.48
ECM1-201ENST00000346569 KIF21AQ7Z4S6 1674 aa18.03■□□□□ 0.48
ECM1-201ENST00000346569 RUSC2Q8N2Y8 1516 aa18.01■□□□□ 0.47
ECM1-201ENST00000346569 EEA1Q15075 1411 aa18■□□□□ 0.47
ECM1-201ENST00000346569 TOPBP1Q92547 1522 aa17.98■□□□□ 0.47
ECM1-201ENST00000346569 DNMBPQ6XZF7 1577 aa17.98■□□□□ 0.47
ECM1-201ENST00000346569 CSRNP3Q8WYN3 585 aa17.98■□□□□ 0.47
ECM1-201ENST00000346569 URB2Q14146 1524 aaKnown RBP17.97■□□□□ 0.47
ECM1-201ENST00000346569 DNAJC5Q9H3Z4 198 aa17.95■□□□□ 0.46
ECM1-201ENST00000346569 FGD5Q6ZNL6 1462 aa17.94■□□□□ 0.46
ECM1-201ENST00000346569 POLA1P09884 1462 aaPredicted RBP17.89■□□□□ 0.45
ECM1-201ENST00000346569 MRC2Q9UBG0 1479 aa17.87■□□□□ 0.45
ECM1-201ENST00000346569 WDR62O43379 1518 aa17.87■□□□□ 0.45
ECM1-201ENST00000346569 KIF27Q86VH2 1401 aa17.85■□□□□ 0.45
ECM1-201ENST00000346569 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
ECM1-201ENST00000346569 ABCA10Q8WWZ4 1543 aa17.82■□□□□ 0.44
ECM1-201ENST00000346569 IGF1RP08069 1367 aa17.79■□□□□ 0.44
ECM1-201ENST00000346569 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
ECM1-201ENST00000346569 PRXQ9BXM0 1461 aa17.74■□□□□ 0.43
ECM1-201ENST00000346569 KIF21BO75037 1637 aa17.72■□□□□ 0.43
ECM1-201ENST00000346569 TNIKQ9UKE5 1360 aa17.71■□□□□ 0.43
ECM1-201ENST00000346569 TARBP1Q13395 1621 aaKnown RBP17.71■□□□□ 0.43
ECM1-201ENST00000346569 GOLGA3Q08378 1498 aa17.71■□□□□ 0.43
ECM1-201ENST00000346569 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
ECM1-201ENST00000346569 WDR97A6NE52 1622 aa17.68■□□□□ 0.42
ECM1-201ENST00000346569 RAPGEF2Q9Y4G8 1499 aa17.67■□□□□ 0.42
ECM1-201ENST00000346569 UBTFP17480 764 aaKnown RBP17.67■□□□□ 0.42
ECM1-201ENST00000346569 IFT140Q96RY7 1462 aa17.66■□□□□ 0.42
ECM1-201ENST00000346569 CARMIL1Q5VZK9 1371 aa17.66■□□□□ 0.42
ECM1-201ENST00000346569 ERICH3Q5RHP9 1530 aa17.64■□□□□ 0.41
ECM1-201ENST00000346569 GAPVD1Q14C86 1478 aa17.63■□□□□ 0.41
ECM1-201ENST00000346569 ABCA5Q8WWZ7 1642 aa17.61■□□□□ 0.41
ECM1-201ENST00000346569 AQRO60306 1485 aaKnown RBP eCLIP17.59■□□□□ 0.41
ECM1-201ENST00000346569 ZNF608Q9ULD9 1512 aaPredicted RBP17.56■□□□□ 0.4
ECM1-201ENST00000346569 CEP162Q5TB80 1403 aa17.54■□□□□ 0.4
ECM1-201ENST00000346569 GRIN2BQ13224 1484 aa17.52■□□□□ 0.39
ECM1-201ENST00000346569 CUL7Q14999 1698 aa17.51■□□□□ 0.39
ECM1-201ENST00000346569 FHAD1B1AJZ9 1412 aa17.46■□□□□ 0.39
ECM1-201ENST00000346569 CLIP1P30622 1438 aa17.44■□□□□ 0.38
ECM1-201ENST00000346569 PBRM1Q86U86 1689 aa17.44■□□□□ 0.38
ECM1-201ENST00000346569 EIF4G3O43432 1585 aaKnown RBP17.43■□□□□ 0.38
ECM1-201ENST00000346569 ADAMTS12P58397 1594 aa17.38■□□□□ 0.37
ECM1-201ENST00000346569 SNAPC4Q5SXM2 1469 aa17.37■□□□□ 0.37
ECM1-201ENST00000346569 MAGI1Q96QZ7 1491 aaPredicted RBP17.36■□□□□ 0.37
ECM1-201ENST00000346569 RANGAP1P46060 587 aaPredicted RBP17.36■□□□□ 0.37
ECM1-201ENST00000346569 ARHGAP35Q9NRY4 1499 aa17.32■□□□□ 0.36
ECM1-201ENST00000346569 OSCARQ8IYS5 282 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms