RNA–Protein interactions for RNA: ENST00000342887.1

CFAP54-201, Transcript of cilia and flagella associated protein 54, humanhuman

TSL 2

Gene CFAP54, Length 3,686 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54-201ENST00000342887 NISCHQ9Y2I1 1504 aa18.53■□□□□ 0.56
CFAP54-201ENST00000342887 CCDC180Q9P1Z9 1646 aa16.33■□□□□ 0.2
CFAP54-201ENST00000342887 ZCCHC6Q5VYS8 1495 aaKnown RBP15.81■□□□□ 0.12
CFAP54-201ENST00000342887 DCAF1Q9Y4B6 1507 aa15.69■□□□□ 0.1
CFAP54-201ENST00000342887 MYO15BQ96JP2 1530 aa15.36■□□□□ 0.05
CFAP54-201ENST00000342887 ABCC9O60706 1549 aa14.97□□□□□ -0.01
CFAP54-201ENST00000342887 NACADO15069 1562 aa14.76□□□□□ -0.05
CFAP54-201ENST00000342887 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
CFAP54-201ENST00000342887 EIF4G1Q04637 1599 aaKnown RBP14.65□□□□□ -0.06
CFAP54-201ENST00000342887 SHROOM4Q9ULL8 1493 aa14.49□□□□□ -0.09
CFAP54-201ENST00000342887 SCRIBQ14160 1630 aa14.48□□□□□ -0.09
CFAP54-201ENST00000342887 RB1CC1Q8TDY2 1594 aa14.48□□□□□ -0.09
CFAP54-201ENST00000342887 RSF1Q96T23 1441 aaPredicted RBP14.42□□□□□ -0.1
CFAP54-201ENST00000342887 BAZ1AQ9NRL2 1556 aaPredicted RBP14.41□□□□□ -0.1
CFAP54-201ENST00000342887 PEG3Q9GZU2 1588 aa14.35□□□□□ -0.11
CFAP54-201ENST00000342887 BICRAQ9NZM4 1560 aa14.3□□□□□ -0.12
CFAP54-201ENST00000342887 MROH2BQ7Z745 1585 aa14.26□□□□□ -0.13
CFAP54-201ENST00000342887 WIZO95785 1651 aa14.24□□□□□ -0.13
CFAP54-201ENST00000342887 SMARCA4P51532 1647 aa14.23□□□□□ -0.13
CFAP54-201ENST00000342887 CHIC1Q5VXU3 224 aa14.2□□□□□ -0.14
CFAP54-201ENST00000342887 CECR2Q9BXF3 1484 aa14.17□□□□□ -0.14
CFAP54-201ENST00000342887 TOP2AP11388 1531 aaKnown RBP14.16□□□□□ -0.14
CFAP54-201ENST00000342887 SMARCA2P51531 1590 aa14.08□□□□□ -0.15
CFAP54-201ENST00000342887 SUPT5HO00267 1087 aaKnown RBP13.97□□□□□ -0.17
CFAP54-201ENST00000342887 PRDM2Q13029 1718 aa13.9□□□□□ -0.18
CFAP54-201ENST00000342887 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
CFAP54-201ENST00000342887 BIVM-ERCC5R4GMW8 1640 aa13.79□□□□□ -0.2
CFAP54-201ENST00000342887 HMGXB3Q12766 1538 aa13.76□□□□□ -0.21
CFAP54-201ENST00000342887 KIF21BO75037 1637 aa13.68□□□□□ -0.22
CFAP54-201ENST00000342887 ATAD2BQ9ULI0 1458 aa13.67□□□□□ -0.22
CFAP54-201ENST00000342887 SYNJ1O43426 1573 aa13.64□□□□□ -0.23
CFAP54-201ENST00000342887 WRNQ14191 1432 aaPredicted RBP eCLIP13.64□□□□□ -0.23
CFAP54-201ENST00000342887 TOP2BQ02880 1626 aa13.63□□□□□ -0.23
CFAP54-201ENST00000342887 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
CFAP54-201ENST00000342887 DCAF8L2P0C7V8 631 aa13.61□□□□□ -0.23
CFAP54-201ENST00000342887 NCAPD3P42695 1498 aa13.55□□□□□ -0.24
CFAP54-201ENST00000342887 EEA1Q15075 1411 aa13.55□□□□□ -0.24
CFAP54-201ENST00000342887 HRCP23327 699 aa13.51□□□□□ -0.25
CFAP54-201ENST00000342887 BAZ1BQ9UIG0 1483 aaKnown RBP13.44□□□□□ -0.26
CFAP54-201ENST00000342887 ERICH3Q5RHP9 1530 aa13.43□□□□□ -0.26
CFAP54-201ENST00000342887 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
CFAP54-201ENST00000342887 LOC105371045A0A1W2PR82 267 aa13.39□□□□□ -0.27
CFAP54-201ENST00000342887 CFTRP13569 1480 aa13.38□□□□□ -0.27
CFAP54-201ENST00000342887 RUSC2Q8N2Y8 1516 aa13.37□□□□□ -0.27
CFAP54-201ENST00000342887 TNIKQ9UKE5 1360 aa13.37□□□□□ -0.27
CFAP54-201ENST00000342887 SOGA1O94964 1423 aa13.35□□□□□ -0.27
CFAP54-201ENST00000342887 CUX1P39880 1505 aa13.35□□□□□ -0.27
CFAP54-201ENST00000342887 PRXQ9BXM0 1461 aa13.32□□□□□ -0.28
CFAP54-201ENST00000342887 GOLGA3Q08378 1498 aa13.28□□□□□ -0.28
CFAP54-201ENST00000342887 TRIM26Q12899 539 aaPredicted RBP13.26□□□□□ -0.29
CFAP54-201ENST00000342887 TRIM41Q8WV44 630 aa13.26□□□□□ -0.29
CFAP54-201ENST00000342887 CEP164Q9UPV0 1460 aa13.26□□□□□ -0.29
CFAP54-201ENST00000342887 CEP162Q5TB80 1403 aa13.24□□□□□ -0.29
CFAP54-201ENST00000342887 CC2D2AQ9P2K1 1620 aa13.17□□□□□ -0.3
CFAP54-201ENST00000342887 MAP3K1Q13233 1512 aa13.16□□□□□ -0.3
CFAP54-201ENST00000342887 CFAP43Q8NDM7 1665 aa13.15□□□□□ -0.3
CFAP54-201ENST00000342887 CUX2O14529 1486 aa13.14□□□□□ -0.31
CFAP54-201ENST00000342887 ARAP1Q96P48 1450 aa13.14□□□□□ -0.31
CFAP54-201ENST00000342887 RAPGEF2Q9Y4G8 1499 aa13.13□□□□□ -0.31
CFAP54-201ENST00000342887 ABCA5Q8WWZ7 1642 aa13.11□□□□□ -0.31
CFAP54-201ENST00000342887 CTTNBP2Q8WZ74 1663 aa13.1□□□□□ -0.31
CFAP54-201ENST00000342887 LRRIQ1Q96JM4 1722 aa13.09□□□□□ -0.31
CFAP54-201ENST00000342887 DNMBPQ6XZF7 1577 aa13.09□□□□□ -0.31
CFAP54-201ENST00000342887 PCGF6Q9BYE7 350 aa13.08□□□□□ -0.32
CFAP54-201ENST00000342887 CUL7Q14999 1698 aa13.07□□□□□ -0.32
CFAP54-201ENST00000342887 VPS8Q8N3P4 1428 aa13.07□□□□□ -0.32
CFAP54-201ENST00000342887 LAMC3Q9Y6N6 1575 aa13.06□□□□□ -0.32
CFAP54-201ENST00000342887 KIF21AQ7Z4S6 1674 aa13.06□□□□□ -0.32
CFAP54-201ENST00000342887 CLIP1P30622 1438 aa13.03□□□□□ -0.32
CFAP54-201ENST00000342887 SAMD9Q5K651 1589 aa13.02□□□□□ -0.32
CFAP54-201ENST00000342887 ABCA10Q8WWZ4 1543 aa13.02□□□□□ -0.33
CFAP54-201ENST00000342887 PABPN1Q86U42 306 aaKnown RBP eCLIP13.01□□□□□ -0.33
CFAP54-201ENST00000342887 TARBP1Q13395 1621 aaKnown RBP13□□□□□ -0.33
CFAP54-201ENST00000342887 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
CFAP54-201ENST00000342887 ARHGAP35Q9NRY4 1499 aa12.96□□□□□ -0.33
CFAP54-201ENST00000342887 RRBP1Q9P2E9 1410 aaKnown RBP12.96□□□□□ -0.34
CFAP54-201ENST00000342887 CADPSQ9ULU8 1353 aa12.96□□□□□ -0.34
CFAP54-201ENST00000342887 TIAM1Q13009 1591 aa12.92□□□□□ -0.34
CFAP54-201ENST00000342887 PBRM1Q86U86 1689 aa12.91□□□□□ -0.34
CFAP54-201ENST00000342887 AQRO60306 1485 aaKnown RBP eCLIP12.91□□□□□ -0.34
CFAP54-201ENST00000342887 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
CFAP54-201ENST00000342887 EFCAB5A4FU69 1503 aa12.9□□□□□ -0.34
CFAP54-201ENST00000342887 TOPBP1Q92547 1522 aa12.9□□□□□ -0.34
CFAP54-201ENST00000342887 ZEB1P37275 1124 aaPredicted RBP12.9□□□□□ -0.35
CFAP54-201ENST00000342887 THOC2Q8NI27 1593 aaKnown RBP12.89□□□□□ -0.35
CFAP54-201ENST00000342887 KIF27Q86VH2 1401 aa12.88□□□□□ -0.35
CFAP54-201ENST00000342887 ARHGEF11O15085 1522 aa12.87□□□□□ -0.35
CFAP54-201ENST00000342887 PPARGC1BQ86YN6 1023 aaKnown RBP12.87□□□□□ -0.35
CFAP54-201ENST00000342887 URB2Q14146 1524 aaKnown RBP12.86□□□□□ -0.35
CFAP54-201ENST00000342887 IGF1RP08069 1367 aa12.86□□□□□ -0.35
CFAP54-201ENST00000342887 POLA1P09884 1462 aaPredicted RBP12.85□□□□□ -0.35
CFAP54-201ENST00000342887 SNAPC4Q5SXM2 1469 aa12.84□□□□□ -0.35
CFAP54-201ENST00000342887 FANCD2Q9BXW9 1451 aa12.84□□□□□ -0.35
CFAP54-201ENST00000342887 PCF11O94913 1555 aaKnown RBP12.84□□□□□ -0.35
CFAP54-201ENST00000342887 ADAMTS12P58397 1594 aa12.76□□□□□ -0.37
CFAP54-201ENST00000342887 FYCO1Q9BQS8 1478 aa12.76□□□□□ -0.37
CFAP54-201ENST00000342887 WDR62O43379 1518 aa12.75□□□□□ -0.37
CFAP54-201ENST00000342887 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.75□□□□□ -0.37
CFAP54-201ENST00000342887 MAPKBP1O60336 1514 aa12.74□□□□□ -0.37
CFAP54-201ENST00000342887 PELP1Q8IZL8 1130 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms