RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NISCHQ9Y2I1 1504 aa22.08■■□□□ 1.13
LIMA1-201ENST00000341247 CCDC180Q9P1Z9 1646 aa18.83■□□□□ 0.61
LIMA1-201ENST00000341247 SHROOM4Q9ULL8 1493 aa18.72■□□□□ 0.59
LIMA1-201ENST00000341247 ZCCHC6Q5VYS8 1495 aaKnown RBP18.63■□□□□ 0.57
LIMA1-201ENST00000341247 DCAF8L2P0C7V8 631 aa18.49■□□□□ 0.55
LIMA1-201ENST00000341247 SUPT5HO00267 1087 aaKnown RBP18.28■□□□□ 0.52
LIMA1-201ENST00000341247 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
LIMA1-201ENST00000341247 ABCC9O60706 1549 aa17.85■□□□□ 0.45
LIMA1-201ENST00000341247 SCRIBQ14160 1630 aa17.74■□□□□ 0.43
LIMA1-201ENST00000341247 MYO15BQ96JP2 1530 aa17.59■□□□□ 0.41
LIMA1-201ENST00000341247 CHIC1Q5VXU3 224 aa17.52■□□□□ 0.4
LIMA1-201ENST00000341247 NACADO15069 1562 aa17.47■□□□□ 0.39
LIMA1-201ENST00000341247 RSF1Q96T23 1441 aaPredicted RBP17.39■□□□□ 0.37
LIMA1-201ENST00000341247 CECR2Q9BXF3 1484 aa17.37■□□□□ 0.37
LIMA1-201ENST00000341247 RB1CC1Q8TDY2 1594 aa17.25■□□□□ 0.35
LIMA1-201ENST00000341247 MROH2BQ7Z745 1585 aa17.24■□□□□ 0.35
LIMA1-201ENST00000341247 UNC13AQ9UPW8 1703 aa17.21■□□□□ 0.35
LIMA1-201ENST00000341247 WIZO95785 1651 aa17.14■□□□□ 0.33
LIMA1-201ENST00000341247 LOC105371045A0A1W2PR82 267 aa17.13■□□□□ 0.33
LIMA1-201ENST00000341247 PABPN1Q86U42 306 aaKnown RBP eCLIP17.04■□□□□ 0.32
LIMA1-201ENST00000341247 BICRAQ9NZM4 1560 aa16.99■□□□□ 0.31
LIMA1-201ENST00000341247 FAM9AQ8IZU1 332 aaPredicted RBP16.96■□□□□ 0.31
LIMA1-201ENST00000341247 EHMT2Q96KQ7 1210 aa16.95■□□□□ 0.3
LIMA1-201ENST00000341247 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
LIMA1-201ENST00000341247 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
LIMA1-201ENST00000341247 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
LIMA1-201ENST00000341247 SMARCA4P51532 1647 aa16.89■□□□□ 0.29
LIMA1-201ENST00000341247 EIF4G1Q04637 1599 aaKnown RBP16.79■□□□□ 0.28
LIMA1-201ENST00000341247 TOP2AP11388 1531 aaKnown RBP16.74■□□□□ 0.27
LIMA1-201ENST00000341247 CCDC88BA6NC98 1476 aa16.73■□□□□ 0.27
LIMA1-201ENST00000341247 SMARCA2P51531 1590 aa16.71■□□□□ 0.27
LIMA1-201ENST00000341247 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
LIMA1-201ENST00000341247 HRCP23327 699 aa16.64■□□□□ 0.25
LIMA1-201ENST00000341247 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
LIMA1-201ENST00000341247 ATAD2BQ9ULI0 1458 aa16.53■□□□□ 0.24
LIMA1-201ENST00000341247 PPARGC1BQ86YN6 1023 aaKnown RBP16.51■□□□□ 0.23
LIMA1-201ENST00000341247 TRIM26Q12899 539 aaPredicted RBP16.49■□□□□ 0.23
LIMA1-201ENST00000341247 RUSC2Q8N2Y8 1516 aa16.42■□□□□ 0.22
LIMA1-201ENST00000341247 SOGA1O94964 1423 aa16.42■□□□□ 0.22
LIMA1-201ENST00000341247 BAZ1BQ9UIG0 1483 aaKnown RBP16.41■□□□□ 0.22
LIMA1-201ENST00000341247 SYNJ1O43426 1573 aa16.33■□□□□ 0.2
LIMA1-201ENST00000341247 TTBK1Q5TCY1 1321 aaPredicted RBP16.32■□□□□ 0.2
LIMA1-201ENST00000341247 WRNQ14191 1432 aaPredicted RBP eCLIP16.27■□□□□ 0.19
LIMA1-201ENST00000341247 UBTFP17480 764 aaKnown RBP16.22■□□□□ 0.19
LIMA1-201ENST00000341247 NCAPD3P42695 1498 aa16.22■□□□□ 0.19
LIMA1-201ENST00000341247 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
LIMA1-201ENST00000341247 HMGXB3Q12766 1538 aa16.17■□□□□ 0.18
LIMA1-201ENST00000341247 RANGAP1P46060 587 aaPredicted RBP16.12■□□□□ 0.17
LIMA1-201ENST00000341247 CEP162Q5TB80 1403 aa16.09■□□□□ 0.17
LIMA1-201ENST00000341247 CC2D2AQ9P2K1 1620 aa16.06■□□□□ 0.16
LIMA1-201ENST00000341247 TOP2BQ02880 1626 aa16.06■□□□□ 0.16
LIMA1-201ENST00000341247 CUX1P39880 1505 aa16.05■□□□□ 0.16
LIMA1-201ENST00000341247 CFTRP13569 1480 aa16.03■□□□□ 0.16
LIMA1-201ENST00000341247 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.03■□□□□ 0.16
LIMA1-201ENST00000341247 TNIKQ9UKE5 1360 aa16.03■□□□□ 0.16
LIMA1-201ENST00000341247 DNAJC5BQ9UF47 199 aa16.02■□□□□ 0.15
LIMA1-201ENST00000341247 RAPGEF2Q9Y4G8 1499 aa16.01■□□□□ 0.15
LIMA1-201ENST00000341247 BIVM-ERCC5R4GMW8 1640 aa16.01■□□□□ 0.15
LIMA1-201ENST00000341247 EEA1Q15075 1411 aa16■□□□□ 0.15
LIMA1-201ENST00000341247 GOLGA3Q08378 1498 aa15.97■□□□□ 0.15
LIMA1-201ENST00000341247 ZEB1P37275 1124 aaPredicted RBP15.97■□□□□ 0.15
LIMA1-201ENST00000341247 CCER1Q8TC90 406 aaPredicted RBP15.94■□□□□ 0.14
LIMA1-201ENST00000341247 KIF21BO75037 1637 aa15.93■□□□□ 0.14
LIMA1-201ENST00000341247 CEP164Q9UPV0 1460 aa15.91■□□□□ 0.14
LIMA1-201ENST00000341247 NESP48681 1621 aa15.89■□□□□ 0.13
LIMA1-201ENST00000341247 CADPSQ9ULU8 1353 aa15.88■□□□□ 0.13
LIMA1-201ENST00000341247 PRDM2Q13029 1718 aa15.85■□□□□ 0.13
LIMA1-201ENST00000341247 CLIP1P30622 1438 aa15.83■□□□□ 0.13
LIMA1-201ENST00000341247 PRXQ9BXM0 1461 aa15.83■□□□□ 0.12
LIMA1-201ENST00000341247 HNRNPUL2Q1KMD3 747 aaKnown RBP15.79■□□□□ 0.12
LIMA1-201ENST00000341247 APLP2Q06481 763 aa15.79■□□□□ 0.12
LIMA1-201ENST00000341247 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
LIMA1-201ENST00000341247 FANCD2Q9BXW9 1451 aa15.75■□□□□ 0.11
LIMA1-201ENST00000341247 KIF27Q86VH2 1401 aa15.73■□□□□ 0.11
LIMA1-201ENST00000341247 CUX2O14529 1486 aa15.73■□□□□ 0.11
LIMA1-201ENST00000341247 RAD54L2Q9Y4B4 1467 aa15.71■□□□□ 0.11
LIMA1-201ENST00000341247 ARAP1Q96P48 1450 aa15.71■□□□□ 0.11
LIMA1-201ENST00000341247 IGF1RP08069 1367 aa15.71■□□□□ 0.11
LIMA1-201ENST00000341247 ERICH3Q5RHP9 1530 aa15.71■□□□□ 0.1
LIMA1-201ENST00000341247 VPS8Q8N3P4 1428 aa15.7■□□□□ 0.1
LIMA1-201ENST00000341247 TOPBP1Q92547 1522 aa15.64■□□□□ 0.09
LIMA1-201ENST00000341247 POLA1P09884 1462 aaPredicted RBP15.63■□□□□ 0.09
LIMA1-201ENST00000341247 URB2Q14146 1524 aaKnown RBP15.62■□□□□ 0.09
LIMA1-201ENST00000341247 KANK4Q5T7N3 995 aaPredicted RBP15.62■□□□□ 0.09
LIMA1-201ENST00000341247 ARHGAP35Q9NRY4 1499 aa15.61■□□□□ 0.09
LIMA1-201ENST00000341247 DNMBPQ6XZF7 1577 aa15.59■□□□□ 0.09
LIMA1-201ENST00000341247 CARMIL1Q5VZK9 1371 aa15.57■□□□□ 0.08
LIMA1-201ENST00000341247 KIF21AQ7Z4S6 1674 aa15.56■□□□□ 0.08
LIMA1-201ENST00000341247 LAMC3Q9Y6N6 1575 aa15.54■□□□□ 0.08
LIMA1-201ENST00000341247 P3H3Q8IVL6 736 aa15.54■□□□□ 0.08
LIMA1-201ENST00000341247 ABCA10Q8WWZ4 1543 aa15.53■□□□□ 0.08
LIMA1-201ENST00000341247 ITGAEP38570 1179 aa15.51■□□□□ 0.07
LIMA1-201ENST00000341247 ATP1B4Q9UN42 357 aaPredicted RBP15.51■□□□□ 0.07
LIMA1-201ENST00000341247 TDRD9Q8NDG6 1382 aaKnown RBP15.5■□□□□ 0.07
LIMA1-201ENST00000341247 WDR97A6NE52 1622 aa15.49■□□□□ 0.07
LIMA1-201ENST00000341247 DIEXFQ68CQ4 756 aaKnown RBP15.46■□□□□ 0.07
LIMA1-201ENST00000341247 ABCA5Q8WWZ7 1642 aa15.41■□□□□ 0.06
LIMA1-201ENST00000341247 PDS5BQ9NTI5 1447 aa15.4■□□□□ 0.06
LIMA1-201ENST00000341247 FHOD3Q2V2M9 1422 aa15.39■□□□□ 0.05
LIMA1-201ENST00000341247 TARBP1Q13395 1621 aaKnown RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms