RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 NISCHQ9Y2I1 1504 aa34.23■■■■□ 3.07
USHBP1-202ENST00000324554 CCDC180Q9P1Z9 1646 aa29.5■■■□□ 2.31
USHBP1-202ENST00000324554 DCAF8L2P0C7V8 631 aa28.77■■■□□ 2.2
USHBP1-202ENST00000324554 ZCCHC6Q5VYS8 1495 aaKnown RBP28.75■■■□□ 2.19
USHBP1-202ENST00000324554 SHROOM4Q9ULL8 1493 aa28.6■■■□□ 2.17
USHBP1-202ENST00000324554 ABCC9O60706 1549 aa28.2■■■□□ 2.11
USHBP1-202ENST00000324554 DCAF1Q9Y4B6 1507 aa28.04■■■□□ 2.08
USHBP1-202ENST00000324554 SUPT5HO00267 1087 aaKnown RBP27.9■■■□□ 2.06
USHBP1-202ENST00000324554 MYO15BQ96JP2 1530 aa27.57■■■□□ 2
USHBP1-202ENST00000324554 SCRIBQ14160 1630 aa27.56■■■□□ 2
USHBP1-202ENST00000324554 NACADO15069 1562 aa27.51■■□□□ 1.99
USHBP1-202ENST00000324554 RB1CC1Q8TDY2 1594 aa27.28■■□□□ 1.96
USHBP1-202ENST00000324554 CHIC1Q5VXU3 224 aa27.14■■□□□ 1.94
USHBP1-202ENST00000324554 UNC13AQ9UPW8 1703 aa26.85■■□□□ 1.89
USHBP1-202ENST00000324554 PABPN1Q86U42 306 aaKnown RBP eCLIP26.81■■□□□ 1.88
USHBP1-202ENST00000324554 CECR2Q9BXF3 1484 aa26.79■■□□□ 1.88
USHBP1-202ENST00000324554 RSF1Q96T23 1441 aaPredicted RBP26.74■■□□□ 1.87
USHBP1-202ENST00000324554 MROH2BQ7Z745 1585 aa26.58■■□□□ 1.85
USHBP1-202ENST00000324554 BICRAQ9NZM4 1560 aa26.56■■□□□ 1.84
USHBP1-202ENST00000324554 WIZO95785 1651 aa26.4■■□□□ 1.82
USHBP1-202ENST00000324554 HRCP23327 699 aa26.37■■□□□ 1.81
USHBP1-202ENST00000324554 BAZ1AQ9NRL2 1556 aaPredicted RBP26.35■■□□□ 1.81
USHBP1-202ENST00000324554 PCGF6Q9BYE7 350 aa26.28■■□□□ 1.8
USHBP1-202ENST00000324554 LOC105371045A0A1W2PR82 267 aa26.27■■□□□ 1.8
USHBP1-202ENST00000324554 SMARCA4P51532 1647 aa26.25■■□□□ 1.79
USHBP1-202ENST00000324554 TRIM41Q8WV44 630 aa26.04■■□□□ 1.76
USHBP1-202ENST00000324554 TOP2AP11388 1531 aaKnown RBP25.93■■□□□ 1.74
USHBP1-202ENST00000324554 PPARGC1BQ86YN6 1023 aaKnown RBP25.84■■□□□ 1.73
USHBP1-202ENST00000324554 CCDC88BA6NC98 1476 aa25.84■■□□□ 1.73
USHBP1-202ENST00000324554 ATAD2BQ9ULI0 1458 aa25.82■■□□□ 1.72
USHBP1-202ENST00000324554 SMARCA2P51531 1590 aa25.77■■□□□ 1.72
USHBP1-202ENST00000324554 PEG3Q9GZU2 1588 aa25.76■■□□□ 1.71
USHBP1-202ENST00000324554 FAM9AQ8IZU1 332 aaPredicted RBP25.75■■□□□ 1.71
USHBP1-202ENST00000324554 EIF4G1Q04637 1599 aaKnown RBP25.75■■□□□ 1.71
USHBP1-202ENST00000324554 TRIM26Q12899 539 aaPredicted RBP25.73■■□□□ 1.71
USHBP1-202ENST00000324554 BAZ1BQ9UIG0 1483 aaKnown RBP25.7■■□□□ 1.7
USHBP1-202ENST00000324554 ABCC8Q09428 1581 aa25.49■■□□□ 1.67
USHBP1-202ENST00000324554 EHMT2Q96KQ7 1210 aa25.47■■□□□ 1.67
USHBP1-202ENST00000324554 NCAPD3P42695 1498 aa25.46■■□□□ 1.67
USHBP1-202ENST00000324554 HMGXB3Q12766 1538 aa25.37■■□□□ 1.65
USHBP1-202ENST00000324554 CC2D2AQ9P2K1 1620 aa25.37■■□□□ 1.65
USHBP1-202ENST00000324554 ZEB1P37275 1124 aaPredicted RBP25.17■■□□□ 1.62
USHBP1-202ENST00000324554 WRNQ14191 1432 aaPredicted RBP eCLIP25.15■■□□□ 1.62
USHBP1-202ENST00000324554 SOGA1O94964 1423 aa25.12■■□□□ 1.61
USHBP1-202ENST00000324554 DNAJC5BQ9UF47 199 aa25.07■■□□□ 1.6
USHBP1-202ENST00000324554 SYNJ1O43426 1573 aa25.06■■□□□ 1.6
USHBP1-202ENST00000324554 EEA1Q15075 1411 aa25.05■■□□□ 1.6
USHBP1-202ENST00000324554 CFTRP13569 1480 aa25.01■■□□□ 1.59
USHBP1-202ENST00000324554 RUSC2Q8N2Y8 1516 aa25■■□□□ 1.59
USHBP1-202ENST00000324554 CEP162Q5TB80 1403 aa24.98■■□□□ 1.59
USHBP1-202ENST00000324554 TNIKQ9UKE5 1360 aa24.96■■□□□ 1.59
USHBP1-202ENST00000324554 CSRNP3Q8WYN3 585 aa24.96■■□□□ 1.59
USHBP1-202ENST00000324554 CADPSQ9ULU8 1353 aa24.93■■□□□ 1.58
USHBP1-202ENST00000324554 GOLGA3Q08378 1498 aa24.85■■□□□ 1.57
USHBP1-202ENST00000324554 NESP48681 1621 aa24.84■■□□□ 1.57
USHBP1-202ENST00000324554 TOP2BQ02880 1626 aa24.81■■□□□ 1.56
USHBP1-202ENST00000324554 CUX1P39880 1505 aa24.8■■□□□ 1.56
USHBP1-202ENST00000324554 UBTFP17480 764 aaKnown RBP24.8■■□□□ 1.56
USHBP1-202ENST00000324554 CEP164Q9UPV0 1460 aa24.72■■□□□ 1.55
USHBP1-202ENST00000324554 KIF21BO75037 1637 aa24.72■■□□□ 1.55
USHBP1-202ENST00000324554 PRDM2Q13029 1718 aa24.72■■□□□ 1.55
USHBP1-202ENST00000324554 BIVM-ERCC5R4GMW8 1640 aa24.72■■□□□ 1.55
USHBP1-202ENST00000324554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.71■■□□□ 1.55
USHBP1-202ENST00000324554 FANCD2Q9BXW9 1451 aa24.69■■□□□ 1.54
USHBP1-202ENST00000324554 TTBK1Q5TCY1 1321 aaPredicted RBP24.64■■□□□ 1.54
USHBP1-202ENST00000324554 CCER1Q8TC90 406 aaPredicted RBP24.61■■□□□ 1.53
USHBP1-202ENST00000324554 RAPGEF2Q9Y4G8 1499 aa24.53■■□□□ 1.52
USHBP1-202ENST00000324554 CLIP1P30622 1438 aa24.53■■□□□ 1.52
USHBP1-202ENST00000324554 LAMC3Q9Y6N6 1575 aa24.52■■□□□ 1.52
USHBP1-202ENST00000324554 RANGAP1P46060 587 aaPredicted RBP24.52■■□□□ 1.52
USHBP1-202ENST00000324554 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
USHBP1-202ENST00000324554 KIF27Q86VH2 1401 aa24.45■■□□□ 1.5
USHBP1-202ENST00000324554 VPS8Q8N3P4 1428 aa24.44■■□□□ 1.5
USHBP1-202ENST00000324554 CUX2O14529 1486 aa24.44■■□□□ 1.5
USHBP1-202ENST00000324554 TOPBP1Q92547 1522 aa24.42■■□□□ 1.5
USHBP1-202ENST00000324554 PDS5BQ9NTI5 1447 aa24.42■■□□□ 1.5
USHBP1-202ENST00000324554 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
USHBP1-202ENST00000324554 SCAF1Q9H7N4 1312 aaKnown RBP24.39■■□□□ 1.5
USHBP1-202ENST00000324554 DNMBPQ6XZF7 1577 aa24.38■■□□□ 1.49
USHBP1-202ENST00000324554 URB2Q14146 1524 aaKnown RBP24.38■■□□□ 1.49
USHBP1-202ENST00000324554 KIF21AQ7Z4S6 1674 aa24.38■■□□□ 1.49
USHBP1-202ENST00000324554 ERICH3Q5RHP9 1530 aa24.36■■□□□ 1.49
USHBP1-202ENST00000324554 POLA1P09884 1462 aaPredicted RBP24.35■■□□□ 1.49
USHBP1-202ENST00000324554 PRXQ9BXM0 1461 aa24.35■■□□□ 1.49
USHBP1-202ENST00000324554 IGF1RP08069 1367 aa24.29■■□□□ 1.48
USHBP1-202ENST00000324554 APLP2Q06481 763 aa24.23■■□□□ 1.47
USHBP1-202ENST00000324554 DIEXFQ68CQ4 756 aaKnown RBP24.21■■□□□ 1.47
USHBP1-202ENST00000324554 TDRD9Q8NDG6 1382 aaKnown RBP24.2■■□□□ 1.46
USHBP1-202ENST00000324554 ABCA10Q8WWZ4 1543 aa24.18■■□□□ 1.46
USHBP1-202ENST00000324554 ARAP1Q96P48 1450 aa24.17■■□□□ 1.46
USHBP1-202ENST00000324554 CARMIL1Q5VZK9 1371 aa24.17■■□□□ 1.46
USHBP1-202ENST00000324554 HNRNPUL2Q1KMD3 747 aaKnown RBP24.16■■□□□ 1.46
USHBP1-202ENST00000324554 ACIN1Q9UKV3 1341 aaKnown RBP24.09■■□□□ 1.45
USHBP1-202ENST00000324554 MRC2Q9UBG0 1479 aa24.09■■□□□ 1.45
USHBP1-202ENST00000324554 NEUROD1Q13562 356 aa24.08■■□□□ 1.45
USHBP1-202ENST00000324554 ERCC6Q03468 1493 aa24.08■■□□□ 1.45
USHBP1-202ENST00000324554 WDR97A6NE52 1622 aa24.02■■□□□ 1.44
USHBP1-202ENST00000324554 GAPVD1Q14C86 1478 aa24■■□□□ 1.43
USHBP1-202ENST00000324554 ZNF316A6NFI3 1004 aaPredicted RBP23.99■■□□□ 1.43
USHBP1-202ENST00000324554 TARBP1Q13395 1621 aaKnown RBP23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms