RNA–Protein interactions for RNA: ENST00000307731.1

CDC40-201, Transcript of cell division cycle 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC40, Length 3,848 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40-201ENST00000307731 NISCHQ9Y2I1 1504 aa16.11■□□□□ 0.17
CDC40-201ENST00000307731 DCAF8L2P0C7V8 631 aa14.15□□□□□ -0.14
CDC40-201ENST00000307731 CCDC180Q9P1Z9 1646 aa13.97□□□□□ -0.17
CDC40-201ENST00000307731 ABCC9O60706 1549 aa13.74□□□□□ -0.21
CDC40-201ENST00000307731 SHROOM4Q9ULL8 1493 aa13.55□□□□□ -0.24
CDC40-201ENST00000307731 CHIC1Q5VXU3 224 aa13.55□□□□□ -0.24
CDC40-201ENST00000307731 ZCCHC6Q5VYS8 1495 aaKnown RBP13.44□□□□□ -0.26
CDC40-201ENST00000307731 AEBP2Q6ZN18 517 aaPredicted RBP13.2□□□□□ -0.3
CDC40-201ENST00000307731 RB1CC1Q8TDY2 1594 aa13.19□□□□□ -0.3
CDC40-201ENST00000307731 NACADO15069 1562 aa13.18□□□□□ -0.3
CDC40-201ENST00000307731 DCAF1Q9Y4B6 1507 aa13.15□□□□□ -0.3
CDC40-201ENST00000307731 SUPT5HO00267 1087 aaKnown RBP13.11□□□□□ -0.31
CDC40-201ENST00000307731 SCRIBQ14160 1630 aa13.1□□□□□ -0.31
CDC40-201ENST00000307731 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
CDC40-201ENST00000307731 MYO15BQ96JP2 1530 aa13.02□□□□□ -0.33
CDC40-201ENST00000307731 CECR2Q9BXF3 1484 aa12.57□□□□□ -0.4
CDC40-201ENST00000307731 UNC13AQ9UPW8 1703 aa12.56□□□□□ -0.4
CDC40-201ENST00000307731 BAZ1AQ9NRL2 1556 aaPredicted RBP12.53□□□□□ -0.4
CDC40-201ENST00000307731 BICRAQ9NZM4 1560 aa12.51□□□□□ -0.41
CDC40-201ENST00000307731 RSF1Q96T23 1441 aaPredicted RBP12.5□□□□□ -0.41
CDC40-201ENST00000307731 MROH2BQ7Z745 1585 aa12.45□□□□□ -0.42
CDC40-201ENST00000307731 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
CDC40-201ENST00000307731 BAZ1BQ9UIG0 1483 aaKnown RBP12.37□□□□□ -0.43
CDC40-201ENST00000307731 EIF4G1Q04637 1599 aaKnown RBP12.33□□□□□ -0.43
CDC40-201ENST00000307731 WIZO95785 1651 aa12.33□□□□□ -0.44
CDC40-201ENST00000307731 SMARCA2P51531 1590 aa12.33□□□□□ -0.44
CDC40-201ENST00000307731 TRIM41Q8WV44 630 aa12.28□□□□□ -0.44
CDC40-201ENST00000307731 ATAD2BQ9ULI0 1458 aa12.28□□□□□ -0.44
CDC40-201ENST00000307731 TOP2AP11388 1531 aaKnown RBP12.21□□□□□ -0.45
CDC40-201ENST00000307731 CC2D2AQ9P2K1 1620 aa12.2□□□□□ -0.46
CDC40-201ENST00000307731 PHF23Q9BUL5 403 aaPredicted RBP12.19□□□□□ -0.46
CDC40-201ENST00000307731 FAM9AQ8IZU1 332 aaPredicted RBP12.19□□□□□ -0.46
CDC40-201ENST00000307731 EHMT2Q96KQ7 1210 aa12.16□□□□□ -0.46
CDC40-201ENST00000307731 NCAPD3P42695 1498 aa12.15□□□□□ -0.46
CDC40-201ENST00000307731 CCDC88BA6NC98 1476 aa12.14□□□□□ -0.47
CDC40-201ENST00000307731 HMGXB3Q12766 1538 aa12.08□□□□□ -0.48
CDC40-201ENST00000307731 DNAJC5BQ9UF47 199 aa12.07□□□□□ -0.48
CDC40-201ENST00000307731 PEG3Q9GZU2 1588 aa12.05□□□□□ -0.48
CDC40-201ENST00000307731 CADPSQ9ULU8 1353 aa11.99□□□□□ -0.49
CDC40-201ENST00000307731 ERCC6Q03468 1493 aa11.95□□□□□ -0.5
CDC40-201ENST00000307731 WRNQ14191 1432 aaPredicted RBP eCLIP11.94□□□□□ -0.5
CDC40-201ENST00000307731 PDS5BQ9NTI5 1447 aa11.93□□□□□ -0.5
CDC40-201ENST00000307731 UBTFP17480 764 aaKnown RBP11.91□□□□□ -0.5
CDC40-201ENST00000307731 ABCC8Q09428 1581 aa11.89□□□□□ -0.51
CDC40-201ENST00000307731 RANGAP1P46060 587 aaPredicted RBP11.88□□□□□ -0.51
CDC40-201ENST00000307731 NESP48681 1621 aa11.87□□□□□ -0.51
CDC40-201ENST00000307731 FANCD2Q9BXW9 1451 aa11.86□□□□□ -0.51
CDC40-201ENST00000307731 CFTRP13569 1480 aa11.86□□□□□ -0.51
CDC40-201ENST00000307731 CEP164Q9UPV0 1460 aa11.85□□□□□ -0.51
CDC40-201ENST00000307731 LOC105371045A0A1W2PR82 267 aa11.81□□□□□ -0.52
CDC40-201ENST00000307731 CSRNP3Q8WYN3 585 aa11.79□□□□□ -0.52
CDC40-201ENST00000307731 LAMC3Q9Y6N6 1575 aa11.79□□□□□ -0.52
CDC40-201ENST00000307731 FBLN2P98095 1184 aa11.75□□□□□ -0.53
CDC40-201ENST00000307731 KIF27Q86VH2 1401 aa11.71□□□□□ -0.54
CDC40-201ENST00000307731 CUX2O14529 1486 aa11.7□□□□□ -0.54
CDC40-201ENST00000307731 SOGA1O94964 1423 aa11.7□□□□□ -0.54
CDC40-201ENST00000307731 APLP2Q06481 763 aa11.7□□□□□ -0.54
CDC40-201ENST00000307731 EEA1Q15075 1411 aa11.69□□□□□ -0.54
CDC40-201ENST00000307731 FGD5Q6ZNL6 1462 aa11.67□□□□□ -0.54
CDC40-201ENST00000307731 MRC2Q9UBG0 1479 aa11.67□□□□□ -0.54
CDC40-201ENST00000307731 SYNJ1O43426 1573 aa11.67□□□□□ -0.54
CDC40-201ENST00000307731 ATP1B4Q9UN42 357 aaPredicted RBP11.66□□□□□ -0.54
CDC40-201ENST00000307731 TDRD9Q8NDG6 1382 aaKnown RBP11.64□□□□□ -0.55
CDC40-201ENST00000307731 CUX1P39880 1505 aa11.64□□□□□ -0.55
CDC40-201ENST00000307731 TOPBP1Q92547 1522 aa11.64□□□□□ -0.55
CDC40-201ENST00000307731 TTBK1Q5TCY1 1321 aaPredicted RBP11.64□□□□□ -0.55
CDC40-201ENST00000307731 DNMBPQ6XZF7 1577 aa11.62□□□□□ -0.55
CDC40-201ENST00000307731 TOP2BQ02880 1626 aa11.62□□□□□ -0.55
CDC40-201ENST00000307731 RAD54L2Q9Y4B4 1467 aa11.61□□□□□ -0.55
CDC40-201ENST00000307731 CHMP7Q8WUX9 453 aaPredicted RBP11.61□□□□□ -0.55
CDC40-201ENST00000307731 PRDM2Q13029 1718 aa11.59□□□□□ -0.55
CDC40-201ENST00000307731 KIF21AQ7Z4S6 1674 aa11.58□□□□□ -0.56
CDC40-201ENST00000307731 POLA1P09884 1462 aaPredicted RBP11.58□□□□□ -0.56
CDC40-201ENST00000307731 URB2Q14146 1524 aaKnown RBP11.58□□□□□ -0.56
CDC40-201ENST00000307731 RUSC2Q8N2Y8 1516 aa11.57□□□□□ -0.56
CDC40-201ENST00000307731 GOLGA3Q08378 1498 aa11.56□□□□□ -0.56
CDC40-201ENST00000307731 CARMIL1Q5VZK9 1371 aa11.56□□□□□ -0.56
CDC40-201ENST00000307731 P3H3Q8IVL6 736 aa11.53□□□□□ -0.56
CDC40-201ENST00000307731 BIVM-ERCC5R4GMW8 1640 aa11.53□□□□□ -0.56
CDC40-201ENST00000307731 GAPVD1Q14C86 1478 aa11.52□□□□□ -0.57
CDC40-201ENST00000307731 IFT140Q96RY7 1462 aa11.51□□□□□ -0.57
CDC40-201ENST00000307731 AQRO60306 1485 aaKnown RBP eCLIP11.5□□□□□ -0.57
CDC40-201ENST00000307731 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.49□□□□□ -0.57
CDC40-201ENST00000307731 HNRNPUL2Q1KMD3 747 aaKnown RBP11.49□□□□□ -0.57
CDC40-201ENST00000307731 PPARGC1BQ86YN6 1023 aaKnown RBP11.49□□□□□ -0.57
CDC40-201ENST00000307731 IGF1RP08069 1367 aa11.46□□□□□ -0.58
CDC40-201ENST00000307731 ABCA10Q8WWZ4 1543 aa11.46□□□□□ -0.58
CDC40-201ENST00000307731 RAPGEF2Q9Y4G8 1499 aa11.45□□□□□ -0.58
CDC40-201ENST00000307731 TNIKQ9UKE5 1360 aa11.45□□□□□ -0.58
CDC40-201ENST00000307731 CLIP1P30622 1438 aa11.44□□□□□ -0.58
CDC40-201ENST00000307731 GRIN2BQ13224 1484 aa11.44□□□□□ -0.58
CDC40-201ENST00000307731 WDR62O43379 1518 aa11.43□□□□□ -0.58
CDC40-201ENST00000307731 CEP162Q5TB80 1403 aa11.43□□□□□ -0.58
CDC40-201ENST00000307731 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
CDC40-201ENST00000307731 PLPPR3Q6T4P5 718 aa11.38□□□□□ -0.59
CDC40-201ENST00000307731 FHAD1B1AJZ9 1412 aa11.38□□□□□ -0.59
CDC40-201ENST00000307731 ARID3CA6NKF2 412 aa11.37□□□□□ -0.59
CDC40-201ENST00000307731 SNAPC4Q5SXM2 1469 aa11.37□□□□□ -0.59
CDC40-201ENST00000307731 THOC2Q8NI27 1593 aaKnown RBP11.35□□□□□ -0.59
CDC40-201ENST00000307731 KIF21BO75037 1637 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms