RNA–Protein interactions for RNA: ENST00000304514.11

RGPD3-201, Transcript of RANBP2-like and GRIP domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene RGPD3, Length 5,510 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD3-201ENST00000304514 NISCHQ9Y2I1 1504 aa15.73■□□□□ 0.11
RGPD3-201ENST00000304514 CCDC180Q9P1Z9 1646 aa13.66□□□□□ -0.22
RGPD3-201ENST00000304514 ZCCHC6Q5VYS8 1495 aaKnown RBP13.35□□□□□ -0.27
RGPD3-201ENST00000304514 DCAF1Q9Y4B6 1507 aa13.04□□□□□ -0.32
RGPD3-201ENST00000304514 SHROOM4Q9ULL8 1493 aa12.97□□□□□ -0.33
RGPD3-201ENST00000304514 MYO15BQ96JP2 1530 aa12.71□□□□□ -0.37
RGPD3-201ENST00000304514 ABCC9O60706 1549 aa12.65□□□□□ -0.38
RGPD3-201ENST00000304514 SUPT5HO00267 1087 aaKnown RBP12.57□□□□□ -0.4
RGPD3-201ENST00000304514 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
RGPD3-201ENST00000304514 NACADO15069 1562 aa12.49□□□□□ -0.41
RGPD3-201ENST00000304514 DCAF8L2P0C7V8 631 aa12.48□□□□□ -0.41
RGPD3-201ENST00000304514 CHIC1Q5VXU3 224 aa12.35□□□□□ -0.43
RGPD3-201ENST00000304514 UNC13AQ9UPW8 1703 aa12.35□□□□□ -0.43
RGPD3-201ENST00000304514 RSF1Q96T23 1441 aaPredicted RBP12.32□□□□□ -0.44
RGPD3-201ENST00000304514 RB1CC1Q8TDY2 1594 aa12.3□□□□□ -0.44
RGPD3-201ENST00000304514 WIZO95785 1651 aa12.2□□□□□ -0.46
RGPD3-201ENST00000304514 MROH2BQ7Z745 1585 aa12.19□□□□□ -0.46
RGPD3-201ENST00000304514 BAZ1AQ9NRL2 1556 aaPredicted RBP12.19□□□□□ -0.46
RGPD3-201ENST00000304514 EIF4G1Q04637 1599 aaKnown RBP12.19□□□□□ -0.46
RGPD3-201ENST00000304514 CECR2Q9BXF3 1484 aa12.17□□□□□ -0.46
RGPD3-201ENST00000304514 SMARCA4P51532 1647 aa12.08□□□□□ -0.48
RGPD3-201ENST00000304514 TOP2AP11388 1531 aaKnown RBP12.03□□□□□ -0.48
RGPD3-201ENST00000304514 BICRAQ9NZM4 1560 aa12.03□□□□□ -0.48
RGPD3-201ENST00000304514 SMARCA2P51531 1590 aa11.96□□□□□ -0.5
RGPD3-201ENST00000304514 PEG3Q9GZU2 1588 aa11.94□□□□□ -0.5
RGPD3-201ENST00000304514 LOC105371045A0A1W2PR82 267 aa11.88□□□□□ -0.51
RGPD3-201ENST00000304514 CCDC88BA6NC98 1476 aa11.85□□□□□ -0.51
RGPD3-201ENST00000304514 HRCP23327 699 aa11.8□□□□□ -0.52
RGPD3-201ENST00000304514 ABCC8Q09428 1581 aa11.79□□□□□ -0.52
RGPD3-201ENST00000304514 TRIM41Q8WV44 630 aa11.79□□□□□ -0.52
RGPD3-201ENST00000304514 PCGF6Q9BYE7 350 aa11.73□□□□□ -0.53
RGPD3-201ENST00000304514 ATAD2BQ9ULI0 1458 aa11.66□□□□□ -0.54
RGPD3-201ENST00000304514 SYNJ1O43426 1573 aa11.65□□□□□ -0.55
RGPD3-201ENST00000304514 TRIM26Q12899 539 aaPredicted RBP11.64□□□□□ -0.55
RGPD3-201ENST00000304514 PRDM2Q13029 1718 aa11.63□□□□□ -0.55
RGPD3-201ENST00000304514 BIVM-ERCC5R4GMW8 1640 aa11.6□□□□□ -0.55
RGPD3-201ENST00000304514 PABPN1Q86U42 306 aaKnown RBP eCLIP11.6□□□□□ -0.55
RGPD3-201ENST00000304514 BAZ1BQ9UIG0 1483 aaKnown RBP11.59□□□□□ -0.55
RGPD3-201ENST00000304514 HMGXB3Q12766 1538 aa11.58□□□□□ -0.56
RGPD3-201ENST00000304514 KIF21BO75037 1637 aa11.58□□□□□ -0.56
RGPD3-201ENST00000304514 FAM9AQ8IZU1 332 aaPredicted RBP11.57□□□□□ -0.56
RGPD3-201ENST00000304514 SOGA1O94964 1423 aa11.57□□□□□ -0.56
RGPD3-201ENST00000304514 TOP2BQ02880 1626 aa11.55□□□□□ -0.56
RGPD3-201ENST00000304514 RUSC2Q8N2Y8 1516 aa11.55□□□□□ -0.56
RGPD3-201ENST00000304514 EEA1Q15075 1411 aa11.55□□□□□ -0.56
RGPD3-201ENST00000304514 WRNQ14191 1432 aaPredicted RBP eCLIP11.54□□□□□ -0.56
RGPD3-201ENST00000304514 PPARGC1BQ86YN6 1023 aaKnown RBP11.49□□□□□ -0.57
RGPD3-201ENST00000304514 TNIKQ9UKE5 1360 aa11.48□□□□□ -0.57
RGPD3-201ENST00000304514 CEP162Q5TB80 1403 aa11.48□□□□□ -0.57
RGPD3-201ENST00000304514 NCAPD3P42695 1498 aa11.47□□□□□ -0.57
RGPD3-201ENST00000304514 GOLGA3Q08378 1498 aa11.46□□□□□ -0.57
RGPD3-201ENST00000304514 CEP164Q9UPV0 1460 aa11.41□□□□□ -0.58
RGPD3-201ENST00000304514 EHMT2Q96KQ7 1210 aa11.4□□□□□ -0.58
RGPD3-201ENST00000304514 CUX1P39880 1505 aa11.39□□□□□ -0.59
RGPD3-201ENST00000304514 ERICH3Q5RHP9 1530 aa11.37□□□□□ -0.59
RGPD3-201ENST00000304514 CFTRP13569 1480 aa11.36□□□□□ -0.59
RGPD3-201ENST00000304514 CSRNP3Q8WYN3 585 aa11.35□□□□□ -0.59
RGPD3-201ENST00000304514 ZEB1P37275 1124 aaPredicted RBP11.33□□□□□ -0.6
RGPD3-201ENST00000304514 RAPGEF2Q9Y4G8 1499 aa11.33□□□□□ -0.6
RGPD3-201ENST00000304514 CC2D2AQ9P2K1 1620 aa11.3□□□□□ -0.6
RGPD3-201ENST00000304514 PRXQ9BXM0 1461 aa11.29□□□□□ -0.6
RGPD3-201ENST00000304514 ARAP1Q96P48 1450 aa11.24□□□□□ -0.61
RGPD3-201ENST00000304514 VPS8Q8N3P4 1428 aa11.24□□□□□ -0.61
RGPD3-201ENST00000304514 CLIP1P30622 1438 aa11.23□□□□□ -0.61
RGPD3-201ENST00000304514 WDR97A6NE52 1622 aa11.22□□□□□ -0.61
RGPD3-201ENST00000304514 UBTFP17480 764 aaKnown RBP11.17□□□□□ -0.62
RGPD3-201ENST00000304514 KIF27Q86VH2 1401 aa11.15□□□□□ -0.62
RGPD3-201ENST00000304514 DNMBPQ6XZF7 1577 aa11.14□□□□□ -0.63
RGPD3-201ENST00000304514 CADPSQ9ULU8 1353 aa11.13□□□□□ -0.63
RGPD3-201ENST00000304514 CTTNBP2Q8WZ74 1663 aa11.13□□□□□ -0.63
RGPD3-201ENST00000304514 FGD5Q6ZNL6 1462 aa11.13□□□□□ -0.63
RGPD3-201ENST00000304514 CFAP43Q8NDM7 1665 aa11.13□□□□□ -0.63
RGPD3-201ENST00000304514 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.11□□□□□ -0.63
RGPD3-201ENST00000304514 ARHGAP35Q9NRY4 1499 aa11.11□□□□□ -0.63
RGPD3-201ENST00000304514 CUL7Q14999 1698 aa11.1□□□□□ -0.63
RGPD3-201ENST00000304514 FANCD2Q9BXW9 1451 aa11.08□□□□□ -0.64
RGPD3-201ENST00000304514 LAMC3Q9Y6N6 1575 aa11.08□□□□□ -0.64
RGPD3-201ENST00000304514 KIF21AQ7Z4S6 1674 aa11.07□□□□□ -0.64
RGPD3-201ENST00000304514 ABCA5Q8WWZ7 1642 aa11.06□□□□□ -0.64
RGPD3-201ENST00000304514 CUX2O14529 1486 aa11.06□□□□□ -0.64
RGPD3-201ENST00000304514 ABCA10Q8WWZ4 1543 aa11.06□□□□□ -0.64
RGPD3-201ENST00000304514 MAP3K1Q13233 1512 aa11.05□□□□□ -0.64
RGPD3-201ENST00000304514 IGF1RP08069 1367 aa11.05□□□□□ -0.64
RGPD3-201ENST00000304514 TOPBP1Q92547 1522 aa11.05□□□□□ -0.64
RGPD3-201ENST00000304514 TIAM1Q13009 1591 aa11.04□□□□□ -0.64
RGPD3-201ENST00000304514 RRBP1Q9P2E9 1410 aaKnown RBP11.04□□□□□ -0.64
RGPD3-201ENST00000304514 CCER1Q8TC90 406 aaPredicted RBP11.04□□□□□ -0.64
RGPD3-201ENST00000304514 LRRIQ1Q96JM4 1722 aa11.04□□□□□ -0.64
RGPD3-201ENST00000304514 TTBK1Q5TCY1 1321 aaPredicted RBP11.03□□□□□ -0.64
RGPD3-201ENST00000304514 PCF11O94913 1555 aaKnown RBP11.02□□□□□ -0.65
RGPD3-201ENST00000304514 NESP48681 1621 aa11.02□□□□□ -0.65
RGPD3-201ENST00000304514 POLA1P09884 1462 aaPredicted RBP11.01□□□□□ -0.65
RGPD3-201ENST00000304514 URB2Q14146 1524 aaKnown RBP11□□□□□ -0.65
RGPD3-201ENST00000304514 PBRM1Q86U86 1689 aa10.99□□□□□ -0.65
RGPD3-201ENST00000304514 EFCAB5A4FU69 1503 aa10.98□□□□□ -0.65
RGPD3-201ENST00000304514 SAMD9Q5K651 1589 aa10.98□□□□□ -0.65
RGPD3-201ENST00000304514 RAD54L2Q9Y4B4 1467 aa10.98□□□□□ -0.65
RGPD3-201ENST00000304514 TARBP1Q13395 1621 aaKnown RBP10.97□□□□□ -0.65
RGPD3-201ENST00000304514 CARMIL1Q5VZK9 1371 aa10.95□□□□□ -0.66
RGPD3-201ENST00000304514 KANK4Q5T7N3 995 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms