RNA–Protein interactions for RNA: ENST00000297784.9

TMC1-201, Transcript of transmembrane channel like 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMC1, Length 3,201 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMC1-201ENST00000297784 NISCHQ9Y2I1 1504 aa15.09■□□□□ 0.01
TMC1-201ENST00000297784 CCDC180Q9P1Z9 1646 aa13.17□□□□□ -0.3
TMC1-201ENST00000297784 ZCCHC6Q5VYS8 1495 aaKnown RBP12.65□□□□□ -0.38
TMC1-201ENST00000297784 ABCC9O60706 1549 aa12.53□□□□□ -0.4
TMC1-201ENST00000297784 DCAF1Q9Y4B6 1507 aa12.45□□□□□ -0.42
TMC1-201ENST00000297784 DCAF8L2P0C7V8 631 aa12.42□□□□□ -0.42
TMC1-201ENST00000297784 MYO15BQ96JP2 1530 aa12.34□□□□□ -0.43
TMC1-201ENST00000297784 NACADO15069 1562 aa12.27□□□□□ -0.45
TMC1-201ENST00000297784 SHROOM4Q9ULL8 1493 aa12.23□□□□□ -0.45
TMC1-201ENST00000297784 RB1CC1Q8TDY2 1594 aa12.17□□□□□ -0.46
TMC1-201ENST00000297784 SCRIBQ14160 1630 aa12.12□□□□□ -0.47
TMC1-201ENST00000297784 UNC13AQ9UPW8 1703 aa12.06□□□□□ -0.48
TMC1-201ENST00000297784 BICRAQ9NZM4 1560 aa11.9□□□□□ -0.5
TMC1-201ENST00000297784 PABPN1Q86U42 306 aaKnown RBP eCLIP11.81□□□□□ -0.52
TMC1-201ENST00000297784 AEBP2Q6ZN18 517 aaPredicted RBP11.81□□□□□ -0.52
TMC1-201ENST00000297784 CECR2Q9BXF3 1484 aa11.76□□□□□ -0.53
TMC1-201ENST00000297784 SUPT5HO00267 1087 aaKnown RBP11.7□□□□□ -0.54
TMC1-201ENST00000297784 RSF1Q96T23 1441 aaPredicted RBP11.68□□□□□ -0.54
TMC1-201ENST00000297784 MROH2BQ7Z745 1585 aa11.67□□□□□ -0.54
TMC1-201ENST00000297784 BAZ1AQ9NRL2 1556 aaPredicted RBP11.62□□□□□ -0.55
TMC1-201ENST00000297784 SMARCA4P51532 1647 aa11.61□□□□□ -0.55
TMC1-201ENST00000297784 WIZO95785 1651 aa11.59□□□□□ -0.55
TMC1-201ENST00000297784 EIF4G1Q04637 1599 aaKnown RBP11.51□□□□□ -0.57
TMC1-201ENST00000297784 PEG3Q9GZU2 1588 aa11.49□□□□□ -0.57
TMC1-201ENST00000297784 ATAD2BQ9ULI0 1458 aa11.44□□□□□ -0.58
TMC1-201ENST00000297784 TOP2AP11388 1531 aaKnown RBP11.41□□□□□ -0.58
TMC1-201ENST00000297784 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
TMC1-201ENST00000297784 CHIC1Q5VXU3 224 aa11.38□□□□□ -0.59
TMC1-201ENST00000297784 CC2D2AQ9P2K1 1620 aa11.37□□□□□ -0.59
TMC1-201ENST00000297784 NCAPD3P42695 1498 aa11.35□□□□□ -0.59
TMC1-201ENST00000297784 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
TMC1-201ENST00000297784 CCDC88BA6NC98 1476 aa11.32□□□□□ -0.6
TMC1-201ENST00000297784 HMGXB3Q12766 1538 aa11.31□□□□□ -0.6
TMC1-201ENST00000297784 DNAJC5BQ9UF47 199 aa11.2□□□□□ -0.62
TMC1-201ENST00000297784 CFTRP13569 1480 aa11.08□□□□□ -0.64
TMC1-201ENST00000297784 ABCC8Q09428 1581 aa11.07□□□□□ -0.64
TMC1-201ENST00000297784 PRDM2Q13029 1718 aa11.04□□□□□ -0.64
TMC1-201ENST00000297784 CADPSQ9ULU8 1353 aa11.03□□□□□ -0.64
TMC1-201ENST00000297784 NESP48681 1621 aa11.02□□□□□ -0.65
TMC1-201ENST00000297784 TRIM41Q8WV44 630 aa10.99□□□□□ -0.65
TMC1-201ENST00000297784 SYNJ1O43426 1573 aa10.97□□□□□ -0.65
TMC1-201ENST00000297784 LAMC3Q9Y6N6 1575 aa10.96□□□□□ -0.66
TMC1-201ENST00000297784 HRCP23327 699 aa10.96□□□□□ -0.66
TMC1-201ENST00000297784 WRNQ14191 1432 aaPredicted RBP eCLIP10.95□□□□□ -0.66
TMC1-201ENST00000297784 CUX1P39880 1505 aa10.91□□□□□ -0.66
TMC1-201ENST00000297784 FANCD2Q9BXW9 1451 aa10.91□□□□□ -0.66
TMC1-201ENST00000297784 TOP2BQ02880 1626 aa10.91□□□□□ -0.66
TMC1-201ENST00000297784 BIVM-ERCC5R4GMW8 1640 aa10.91□□□□□ -0.66
TMC1-201ENST00000297784 KIF21AQ7Z4S6 1674 aa10.89□□□□□ -0.67
TMC1-201ENST00000297784 SOGA1O94964 1423 aa10.84□□□□□ -0.67
TMC1-201ENST00000297784 PDS5BQ9NTI5 1447 aa10.84□□□□□ -0.67
TMC1-201ENST00000297784 RUSC2Q8N2Y8 1516 aa10.84□□□□□ -0.67
TMC1-201ENST00000297784 CEP164Q9UPV0 1460 aa10.83□□□□□ -0.68
TMC1-201ENST00000297784 URB2Q14146 1524 aaKnown RBP10.82□□□□□ -0.68
TMC1-201ENST00000297784 PELP1Q8IZL8 1130 aaKnown RBP10.8□□□□□ -0.68
TMC1-201ENST00000297784 DNMBPQ6XZF7 1577 aa10.8□□□□□ -0.68
TMC1-201ENST00000297784 TOPBP1Q92547 1522 aa10.8□□□□□ -0.68
TMC1-201ENST00000297784 FAM9AQ8IZU1 332 aaPredicted RBP10.8□□□□□ -0.68
TMC1-201ENST00000297784 LOC105371045A0A1W2PR82 267 aa10.79□□□□□ -0.68
TMC1-201ENST00000297784 FGD5Q6ZNL6 1462 aa10.78□□□□□ -0.68
TMC1-201ENST00000297784 POLA1P09884 1462 aaPredicted RBP10.75□□□□□ -0.69
TMC1-201ENST00000297784 MRC2Q9UBG0 1479 aa10.72□□□□□ -0.69
TMC1-201ENST00000297784 RAD54L2Q9Y4B4 1467 aa10.72□□□□□ -0.69
TMC1-201ENST00000297784 THOC2Q8NI27 1593 aaKnown RBP10.72□□□□□ -0.69
TMC1-201ENST00000297784 WDR62O43379 1518 aa10.71□□□□□ -0.7
TMC1-201ENST00000297784 WDR97A6NE52 1622 aa10.7□□□□□ -0.7
TMC1-201ENST00000297784 EEA1Q15075 1411 aa10.7□□□□□ -0.7
TMC1-201ENST00000297784 ERCC6Q03468 1493 aa10.69□□□□□ -0.7
TMC1-201ENST00000297784 CSRNP3Q8WYN3 585 aa10.69□□□□□ -0.7
TMC1-201ENST00000297784 TARBP1Q13395 1621 aaKnown RBP10.69□□□□□ -0.7
TMC1-201ENST00000297784 ABCA10Q8WWZ4 1543 aa10.68□□□□□ -0.7
TMC1-201ENST00000297784 CUX2O14529 1486 aa10.68□□□□□ -0.7
TMC1-201ENST00000297784 EHMT2Q96KQ7 1210 aa10.66□□□□□ -0.7
TMC1-201ENST00000297784 KIF27Q86VH2 1401 aa10.65□□□□□ -0.7
TMC1-201ENST00000297784 IGF1RP08069 1367 aa10.63□□□□□ -0.71
TMC1-201ENST00000297784 KIF21BO75037 1637 aa10.63□□□□□ -0.71
TMC1-201ENST00000297784 ABCA5Q8WWZ7 1642 aa10.62□□□□□ -0.71
TMC1-201ENST00000297784 PRXQ9BXM0 1461 aa10.62□□□□□ -0.71
TMC1-201ENST00000297784 RAPGEF2Q9Y4G8 1499 aa10.61□□□□□ -0.71
TMC1-201ENST00000297784 TDRD9Q8NDG6 1382 aaKnown RBP10.61□□□□□ -0.71
TMC1-201ENST00000297784 ZNF608Q9ULD9 1512 aaPredicted RBP10.59□□□□□ -0.71
TMC1-201ENST00000297784 GOLGA3Q08378 1498 aa10.57□□□□□ -0.72
TMC1-201ENST00000297784 IFT140Q96RY7 1462 aa10.57□□□□□ -0.72
TMC1-201ENST00000297784 AQRO60306 1485 aaKnown RBP eCLIP10.57□□□□□ -0.72
TMC1-201ENST00000297784 GAPVD1Q14C86 1478 aa10.57□□□□□ -0.72
TMC1-201ENST00000297784 ERICH3Q5RHP9 1530 aa10.56□□□□□ -0.72
TMC1-201ENST00000297784 PBRM1Q86U86 1689 aa10.56□□□□□ -0.72
TMC1-201ENST00000297784 PCGF6Q9BYE7 350 aa10.55□□□□□ -0.72
TMC1-201ENST00000297784 PPARGC1BQ86YN6 1023 aaKnown RBP10.54□□□□□ -0.72
TMC1-201ENST00000297784 TNIKQ9UKE5 1360 aa10.54□□□□□ -0.72
TMC1-201ENST00000297784 CARMIL1Q5VZK9 1371 aa10.54□□□□□ -0.72
TMC1-201ENST00000297784 EIF4G3O43432 1585 aaKnown RBP10.53□□□□□ -0.72
TMC1-201ENST00000297784 CUL7Q14999 1698 aa10.52□□□□□ -0.72
TMC1-201ENST00000297784 UBTFP17480 764 aaKnown RBP10.51□□□□□ -0.73
TMC1-201ENST00000297784 CEP162Q5TB80 1403 aa10.49□□□□□ -0.73
TMC1-201ENST00000297784 GRIN2BQ13224 1484 aa10.48□□□□□ -0.73
TMC1-201ENST00000297784 ADAMTS12P58397 1594 aa10.47□□□□□ -0.73
TMC1-201ENST00000297784 MYT1Q01538 1121 aa10.46□□□□□ -0.73
TMC1-201ENST00000297784 SNAPC4Q5SXM2 1469 aa10.44□□□□□ -0.74
TMC1-201ENST00000297784 FHAD1B1AJZ9 1412 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms