RNA–Protein interactions for RNA: ENST00000286349.3

TRIM42-201, Transcript of tripartite motif containing 42, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM42, Length 2,539 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM42-201ENST00000286349 NISCHQ9Y2I1 1504 aa16.73■□□□□ 0.27
TRIM42-201ENST00000286349 CCDC180Q9P1Z9 1646 aa14.65□□□□□ -0.06
TRIM42-201ENST00000286349 ABCC9O60706 1549 aa14.23□□□□□ -0.13
TRIM42-201ENST00000286349 ZCCHC6Q5VYS8 1495 aaKnown RBP13.97□□□□□ -0.17
TRIM42-201ENST00000286349 DCAF8L2P0C7V8 631 aa13.93□□□□□ -0.18
TRIM42-201ENST00000286349 DCAF1Q9Y4B6 1507 aa13.81□□□□□ -0.2
TRIM42-201ENST00000286349 MYO15BQ96JP2 1530 aa13.77□□□□□ -0.2
TRIM42-201ENST00000286349 NACADO15069 1562 aa13.77□□□□□ -0.21
TRIM42-201ENST00000286349 RB1CC1Q8TDY2 1594 aa13.71□□□□□ -0.21
TRIM42-201ENST00000286349 SCRIBQ14160 1630 aa13.47□□□□□ -0.25
TRIM42-201ENST00000286349 SHROOM4Q9ULL8 1493 aa13.43□□□□□ -0.26
TRIM42-201ENST00000286349 PABPN1Q86U42 306 aaKnown RBP eCLIP13.41□□□□□ -0.26
TRIM42-201ENST00000286349 UNC13AQ9UPW8 1703 aa13.41□□□□□ -0.26
TRIM42-201ENST00000286349 BICRAQ9NZM4 1560 aa13.37□□□□□ -0.27
TRIM42-201ENST00000286349 MYT1Q01538 1121 aa13.26□□□□□ -0.29
TRIM42-201ENST00000286349 PELP1Q8IZL8 1130 aaKnown RBP13.25□□□□□ -0.29
TRIM42-201ENST00000286349 CECR2Q9BXF3 1484 aa13.07□□□□□ -0.32
TRIM42-201ENST00000286349 DNAJC5BQ9UF47 199 aa12.97□□□□□ -0.33
TRIM42-201ENST00000286349 EIF4G1Q04637 1599 aaKnown RBP12.96□□□□□ -0.34
TRIM42-201ENST00000286349 SUPT5HO00267 1087 aaKnown RBP12.96□□□□□ -0.34
TRIM42-201ENST00000286349 TTBK1Q5TCY1 1321 aaPredicted RBP12.93□□□□□ -0.34
TRIM42-201ENST00000286349 MROH2BQ7Z745 1585 aa12.93□□□□□ -0.34
TRIM42-201ENST00000286349 BAZ1AQ9NRL2 1556 aaPredicted RBP12.9□□□□□ -0.34
TRIM42-201ENST00000286349 SMARCA4P51532 1647 aa12.89□□□□□ -0.35
TRIM42-201ENST00000286349 RSF1Q96T23 1441 aaPredicted RBP12.89□□□□□ -0.35
TRIM42-201ENST00000286349 CC2D2AQ9P2K1 1620 aa12.85□□□□□ -0.35
TRIM42-201ENST00000286349 ATAD2BQ9ULI0 1458 aa12.81□□□□□ -0.36
TRIM42-201ENST00000286349 SLC24A1O60721 1099 aa12.8□□□□□ -0.36
TRIM42-201ENST00000286349 WIZO95785 1651 aa12.77□□□□□ -0.37
TRIM42-201ENST00000286349 NCAPD3P42695 1498 aa12.76□□□□□ -0.37
TRIM42-201ENST00000286349 PEG3Q9GZU2 1588 aa12.76□□□□□ -0.37
TRIM42-201ENST00000286349 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
TRIM42-201ENST00000286349 BAZ1BQ9UIG0 1483 aaKnown RBP12.67□□□□□ -0.38
TRIM42-201ENST00000286349 HMGXB3Q12766 1538 aa12.66□□□□□ -0.38
TRIM42-201ENST00000286349 TOP2AP11388 1531 aaKnown RBP12.61□□□□□ -0.39
TRIM42-201ENST00000286349 CHIC1Q5VXU3 224 aa12.56□□□□□ -0.4
TRIM42-201ENST00000286349 CCDC88BA6NC98 1476 aa12.53□□□□□ -0.4
TRIM42-201ENST00000286349 NESP48681 1621 aa12.42□□□□□ -0.42
TRIM42-201ENST00000286349 CADPSQ9ULU8 1353 aa12.41□□□□□ -0.42
TRIM42-201ENST00000286349 PRKCSHP14314 528 aaPredicted RBP12.4□□□□□ -0.42
TRIM42-201ENST00000286349 CFTRP13569 1480 aa12.38□□□□□ -0.43
TRIM42-201ENST00000286349 ERICH6Q7L0X2 663 aa12.35□□□□□ -0.43
TRIM42-201ENST00000286349 APLP2Q06481 763 aa12.34□□□□□ -0.43
TRIM42-201ENST00000286349 LAMC3Q9Y6N6 1575 aa12.32□□□□□ -0.44
TRIM42-201ENST00000286349 PDS5BQ9NTI5 1447 aa12.26□□□□□ -0.45
TRIM42-201ENST00000286349 FANCD2Q9BXW9 1451 aa12.25□□□□□ -0.45
TRIM42-201ENST00000286349 TRIM41Q8WV44 630 aa12.22□□□□□ -0.45
TRIM42-201ENST00000286349 ERCC6Q03468 1493 aa12.19□□□□□ -0.46
TRIM42-201ENST00000286349 KIF21AQ7Z4S6 1674 aa12.18□□□□□ -0.46
TRIM42-201ENST00000286349 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
TRIM42-201ENST00000286349 PRDM2Q13029 1718 aa12.16□□□□□ -0.46
TRIM42-201ENST00000286349 DAXXQ9UER7 740 aaPredicted RBP12.14□□□□□ -0.47
TRIM42-201ENST00000286349 URB2Q14146 1524 aaKnown RBP12.14□□□□□ -0.47
TRIM42-201ENST00000286349 ABCC8Q09428 1581 aa12.13□□□□□ -0.47
TRIM42-201ENST00000286349 MRC2Q9UBG0 1479 aa12.12□□□□□ -0.47
TRIM42-201ENST00000286349 CUX1P39880 1505 aa12.1□□□□□ -0.47
TRIM42-201ENST00000286349 THOC2Q8NI27 1593 aaKnown RBP12.1□□□□□ -0.47
TRIM42-201ENST00000286349 WRNQ14191 1432 aaPredicted RBP eCLIP12.09□□□□□ -0.47
TRIM42-201ENST00000286349 TOPBP1Q92547 1522 aa12.08□□□□□ -0.48
TRIM42-201ENST00000286349 WDR62O43379 1518 aa12.07□□□□□ -0.48
TRIM42-201ENST00000286349 SYNJ1O43426 1573 aa12.05□□□□□ -0.48
TRIM42-201ENST00000286349 DNMBPQ6XZF7 1577 aa12.05□□□□□ -0.48
TRIM42-201ENST00000286349 LOC105371045A0A1W2PR82 267 aa12.04□□□□□ -0.48
TRIM42-201ENST00000286349 TOP2BQ02880 1626 aa12.01□□□□□ -0.49
TRIM42-201ENST00000286349 CUX2O14529 1486 aa12.01□□□□□ -0.49
TRIM42-201ENST00000286349 POLA1P09884 1462 aaPredicted RBP12□□□□□ -0.49
TRIM42-201ENST00000286349 FGD5Q6ZNL6 1462 aa12□□□□□ -0.49
TRIM42-201ENST00000286349 BIVM-ERCC5R4GMW8 1640 aa11.99□□□□□ -0.49
TRIM42-201ENST00000286349 RAD54L2Q9Y4B4 1467 aa11.99□□□□□ -0.49
TRIM42-201ENST00000286349 SOGA1O94964 1423 aa11.97□□□□□ -0.49
TRIM42-201ENST00000286349 EEA1Q15075 1411 aa11.95□□□□□ -0.5
TRIM42-201ENST00000286349 FAM9AQ8IZU1 332 aaPredicted RBP11.93□□□□□ -0.5
TRIM42-201ENST00000286349 TARBP1Q13395 1621 aaKnown RBP11.93□□□□□ -0.5
TRIM42-201ENST00000286349 IFT140Q96RY7 1462 aa11.92□□□□□ -0.5
TRIM42-201ENST00000286349 ZNF608Q9ULD9 1512 aaPredicted RBP11.91□□□□□ -0.5
TRIM42-201ENST00000286349 TDRD9Q8NDG6 1382 aaKnown RBP11.9□□□□□ -0.5
TRIM42-201ENST00000286349 ABCA10Q8WWZ4 1543 aa11.89□□□□□ -0.51
TRIM42-201ENST00000286349 AQRO60306 1485 aaKnown RBP eCLIP11.88□□□□□ -0.51
TRIM42-201ENST00000286349 RUSC2Q8N2Y8 1516 aa11.87□□□□□ -0.51
TRIM42-201ENST00000286349 WDR97A6NE52 1622 aa11.84□□□□□ -0.51
TRIM42-201ENST00000286349 GAPVD1Q14C86 1478 aa11.81□□□□□ -0.52
TRIM42-201ENST00000286349 IGF1RP08069 1367 aa11.81□□□□□ -0.52
TRIM42-201ENST00000286349 KIF27Q86VH2 1401 aa11.8□□□□□ -0.52
TRIM42-201ENST00000286349 TRIM26Q12899 539 aaPredicted RBP11.8□□□□□ -0.52
TRIM42-201ENST00000286349 PCGF6Q9BYE7 350 aa11.8□□□□□ -0.52
TRIM42-201ENST00000286349 CSRNP3Q8WYN3 585 aa11.8□□□□□ -0.52
TRIM42-201ENST00000286349 ABCA5Q8WWZ7 1642 aa11.79□□□□□ -0.52
TRIM42-201ENST00000286349 BCL11AQ9H165 835 aa11.79□□□□□ -0.52
TRIM42-201ENST00000286349 EIF4G3O43432 1585 aaKnown RBP11.79□□□□□ -0.52
TRIM42-201ENST00000286349 EHMT2Q96KQ7 1210 aa11.78□□□□□ -0.52
TRIM42-201ENST00000286349 GRIN2BQ13224 1484 aa11.76□□□□□ -0.53
TRIM42-201ENST00000286349 TNIKQ9UKE5 1360 aa11.76□□□□□ -0.53
TRIM42-201ENST00000286349 GOLGA3Q08378 1498 aa11.75□□□□□ -0.53
TRIM42-201ENST00000286349 HRCP23327 699 aa11.75□□□□□ -0.53
TRIM42-201ENST00000286349 KIF21BO75037 1637 aa11.73□□□□□ -0.53
TRIM42-201ENST00000286349 SNAPC4Q5SXM2 1469 aa11.73□□□□□ -0.53
TRIM42-201ENST00000286349 ERICH3Q5RHP9 1530 aa11.72□□□□□ -0.53
TRIM42-201ENST00000286349 CARMIL1Q5VZK9 1371 aa11.7□□□□□ -0.54
TRIM42-201ENST00000286349 PBRM1Q86U86 1689 aa11.7□□□□□ -0.54
TRIM42-201ENST00000286349 CEP162Q5TB80 1403 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms