RNA–Protein interactions for RNA: ENST00000285124.12

PPP4R1-201, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 5

Gene PPP4R1, Length 2,917 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-201ENST00000285124 NISCHQ9Y2I1 1504 aa21.82■■□□□ 1.08
PPP4R1-201ENST00000285124 DCAF8L2P0C7V8 631 aa18.9■□□□□ 0.62
PPP4R1-201ENST00000285124 CCDC180Q9P1Z9 1646 aa18.72■□□□□ 0.59
PPP4R1-201ENST00000285124 ABCC9O60706 1549 aa18.46■□□□□ 0.55
PPP4R1-201ENST00000285124 SHROOM4Q9ULL8 1493 aa18.4■□□□□ 0.54
PPP4R1-201ENST00000285124 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
PPP4R1-201ENST00000285124 DCAF1Q9Y4B6 1507 aa17.74■□□□□ 0.43
PPP4R1-201ENST00000285124 SUPT5HO00267 1087 aaKnown RBP17.72■□□□□ 0.43
PPP4R1-201ENST00000285124 SCRIBQ14160 1630 aa17.69■□□□□ 0.42
PPP4R1-201ENST00000285124 NACADO15069 1562 aa17.64■□□□□ 0.41
PPP4R1-201ENST00000285124 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.41
PPP4R1-201ENST00000285124 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
PPP4R1-201ENST00000285124 MYO15BQ96JP2 1530 aa17.51■□□□□ 0.39
PPP4R1-201ENST00000285124 CECR2Q9BXF3 1484 aa17.2■□□□□ 0.34
PPP4R1-201ENST00000285124 UNC13AQ9UPW8 1703 aa17.11■□□□□ 0.33
PPP4R1-201ENST00000285124 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
PPP4R1-201ENST00000285124 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
PPP4R1-201ENST00000285124 MROH2BQ7Z745 1585 aa16.98■□□□□ 0.31
PPP4R1-201ENST00000285124 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
PPP4R1-201ENST00000285124 WIZO95785 1651 aa16.81■□□□□ 0.28
PPP4R1-201ENST00000285124 SMARCA4P51532 1647 aa16.73■□□□□ 0.27
PPP4R1-201ENST00000285124 CHIC1Q5VXU3 224 aa16.64■□□□□ 0.25
PPP4R1-201ENST00000285124 EIF4G1Q04637 1599 aaKnown RBP16.62■□□□□ 0.25
PPP4R1-201ENST00000285124 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
PPP4R1-201ENST00000285124 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
PPP4R1-201ENST00000285124 BAZ1BQ9UIG0 1483 aaKnown RBP16.55■□□□□ 0.24
PPP4R1-201ENST00000285124 CCDC88BA6NC98 1476 aa16.51■□□□□ 0.23
PPP4R1-201ENST00000285124 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
PPP4R1-201ENST00000285124 EHMT2Q96KQ7 1210 aa16.48■□□□□ 0.23
PPP4R1-201ENST00000285124 TOP2AP11388 1531 aaKnown RBP16.47■□□□□ 0.23
PPP4R1-201ENST00000285124 FAM9AQ8IZU1 332 aaPredicted RBP16.47■□□□□ 0.23
PPP4R1-201ENST00000285124 SMARCA2P51531 1590 aa16.45■□□□□ 0.22
PPP4R1-201ENST00000285124 CC2D2AQ9P2K1 1620 aa16.44■□□□□ 0.22
PPP4R1-201ENST00000285124 NCAPD3P42695 1498 aa16.39■□□□□ 0.21
PPP4R1-201ENST00000285124 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
PPP4R1-201ENST00000285124 LOC105371045A0A1W2PR82 267 aa16.26■□□□□ 0.19
PPP4R1-201ENST00000285124 ABCC8Q09428 1581 aa16.22■□□□□ 0.19
PPP4R1-201ENST00000285124 HMGXB3Q12766 1538 aa16.21■□□□□ 0.19
PPP4R1-201ENST00000285124 NESP48681 1621 aa16.14■□□□□ 0.17
PPP4R1-201ENST00000285124 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
PPP4R1-201ENST00000285124 WRNQ14191 1432 aaPredicted RBP eCLIP16.06■□□□□ 0.16
PPP4R1-201ENST00000285124 CFTRP13569 1480 aa16.04■□□□□ 0.16
PPP4R1-201ENST00000285124 SOGA1O94964 1423 aa15.98■□□□□ 0.15
PPP4R1-201ENST00000285124 RANGAP1P46060 587 aaPredicted RBP15.96■□□□□ 0.15
PPP4R1-201ENST00000285124 FANCD2Q9BXW9 1451 aa15.94■□□□□ 0.14
PPP4R1-201ENST00000285124 RUSC2Q8N2Y8 1516 aa15.93■□□□□ 0.14
PPP4R1-201ENST00000285124 SYNJ1O43426 1573 aa15.9■□□□□ 0.14
PPP4R1-201ENST00000285124 UBTFP17480 764 aaKnown RBP15.89■□□□□ 0.13
PPP4R1-201ENST00000285124 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
PPP4R1-201ENST00000285124 PDS5BQ9NTI5 1447 aa15.85■□□□□ 0.13
PPP4R1-201ENST00000285124 CUX1P39880 1505 aa15.83■□□□□ 0.13
PPP4R1-201ENST00000285124 ERCC6Q03468 1493 aa15.8■□□□□ 0.12
PPP4R1-201ENST00000285124 CEP164Q9UPV0 1460 aa15.8■□□□□ 0.12
PPP4R1-201ENST00000285124 RAD54L2Q9Y4B4 1467 aa15.76■□□□□ 0.11
PPP4R1-201ENST00000285124 LAMC3Q9Y6N6 1575 aa15.76■□□□□ 0.11
PPP4R1-201ENST00000285124 FGD5Q6ZNL6 1462 aa15.73■□□□□ 0.11
PPP4R1-201ENST00000285124 TDRD9Q8NDG6 1382 aaKnown RBP15.72■□□□□ 0.11
PPP4R1-201ENST00000285124 PPARGC1BQ86YN6 1023 aaKnown RBP15.72■□□□□ 0.11
PPP4R1-201ENST00000285124 TOP2BQ02880 1626 aa15.72■□□□□ 0.11
PPP4R1-201ENST00000285124 CUX2O14529 1486 aa15.71■□□□□ 0.11
PPP4R1-201ENST00000285124 URB2Q14146 1524 aaKnown RBP15.7■□□□□ 0.1
PPP4R1-201ENST00000285124 TOPBP1Q92547 1522 aa15.7■□□□□ 0.1
PPP4R1-201ENST00000285124 TTBK1Q5TCY1 1321 aaPredicted RBP15.68■□□□□ 0.1
PPP4R1-201ENST00000285124 KIF21AQ7Z4S6 1674 aa15.65■□□□□ 0.1
PPP4R1-201ENST00000285124 KIF27Q86VH2 1401 aa15.65■□□□□ 0.1
PPP4R1-201ENST00000285124 POLA1P09884 1462 aaPredicted RBP15.65■□□□□ 0.1
PPP4R1-201ENST00000285124 FBLN2P98095 1184 aa15.61■□□□□ 0.09
PPP4R1-201ENST00000285124 BIVM-ERCC5R4GMW8 1640 aa15.6■□□□□ 0.09
PPP4R1-201ENST00000285124 DNMBPQ6XZF7 1577 aa15.59■□□□□ 0.09
PPP4R1-201ENST00000285124 EEA1Q15075 1411 aa15.59■□□□□ 0.09
PPP4R1-201ENST00000285124 IGF1RP08069 1367 aa15.58■□□□□ 0.08
PPP4R1-201ENST00000285124 MRC2Q9UBG0 1479 aa15.58■□□□□ 0.08
PPP4R1-201ENST00000285124 RAPGEF2Q9Y4G8 1499 aa15.58■□□□□ 0.08
PPP4R1-201ENST00000285124 AQRO60306 1485 aaKnown RBP eCLIP15.57■□□□□ 0.083e-6■■■■□ 20.1
PPP4R1-201ENST00000285124 PRDM2Q13029 1718 aa15.57■□□□□ 0.08
PPP4R1-201ENST00000285124 P3H3Q8IVL6 736 aa15.55■□□□□ 0.08
PPP4R1-201ENST00000285124 CARMIL1Q5VZK9 1371 aa15.54■□□□□ 0.08
PPP4R1-201ENST00000285124 GOLGA3Q08378 1498 aa15.51■□□□□ 0.07
PPP4R1-201ENST00000285124 ZNF608Q9ULD9 1512 aaPredicted RBP15.49■□□□□ 0.07
PPP4R1-201ENST00000285124 ATP1B4Q9UN42 357 aaPredicted RBP15.47■□□□□ 0.07
PPP4R1-201ENST00000285124 TNIKQ9UKE5 1360 aa15.46■□□□□ 0.07
PPP4R1-201ENST00000285124 CEP162Q5TB80 1403 aa15.46■□□□□ 0.07
PPP4R1-201ENST00000285124 GAPVD1Q14C86 1478 aa15.46■□□□□ 0.06
PPP4R1-201ENST00000285124 ABCA10Q8WWZ4 1543 aa15.46■□□□□ 0.06
PPP4R1-201ENST00000285124 PCGF6Q9BYE7 350 aa15.44■□□□□ 0.06
PPP4R1-201ENST00000285124 PRXQ9BXM0 1461 aa15.42■□□□□ 0.06
PPP4R1-201ENST00000285124 CHMP7Q8WUX9 453 aaPredicted RBP15.42■□□□□ 0.06
PPP4R1-201ENST00000285124 CLIP1P30622 1438 aa15.39■□□□□ 0.05
PPP4R1-201ENST00000285124 WDR62O43379 1518 aa15.38■□□□□ 0.05
PPP4R1-201ENST00000285124 IFT140Q96RY7 1462 aa15.36■□□□□ 0.05
PPP4R1-201ENST00000285124 APLP2Q06481 763 aa15.33■□□□□ 0.05
PPP4R1-201ENST00000285124 THOC2Q8NI27 1593 aaKnown RBP15.33■□□□□ 0.04
PPP4R1-201ENST00000285124 TARBP1Q13395 1621 aaKnown RBP15.33■□□□□ 0.04
PPP4R1-201ENST00000285124 ARID3CA6NKF2 412 aa15.32■□□□□ 0.04
PPP4R1-201ENST00000285124 KIF21BO75037 1637 aa15.32■□□□□ 0.04
PPP4R1-201ENST00000285124 GRIN2BQ13224 1484 aa15.29■□□□□ 0.04
PPP4R1-201ENST00000285124 SNAPC4Q5SXM2 1469 aa15.28■□□□□ 0.04
PPP4R1-201ENST00000285124 ERICH3Q5RHP9 1530 aa15.24■□□□□ 0.03
PPP4R1-201ENST00000285124 FHAD1B1AJZ9 1412 aa15.23■□□□□ 0.03
PPP4R1-201ENST00000285124 ABCA5Q8WWZ7 1642 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms