RNA–Protein interactions for RNA: ENST00000272395.2

TRIM43-201, Transcript of tripartite motif containing 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM43, Length 1,682 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43-201ENST00000272395 NISCHQ9Y2I1 1504 aa19.88■□□□□ 0.77
TRIM43-201ENST00000272395 CCDC180Q9P1Z9 1646 aa17.52■□□□□ 0.39
TRIM43-201ENST00000272395 ABCC9O60706 1549 aa17.11■□□□□ 0.33
TRIM43-201ENST00000272395 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
TRIM43-201ENST00000272395 ZCCHC6Q5VYS8 1495 aaKnown RBP16.6■□□□□ 0.25
TRIM43-201ENST00000272395 POTEDQ86YR6 584 aa16.52■□□□□ 0.23
TRIM43-201ENST00000272395 NACADO15069 1562 aa16.46■□□□□ 0.23
TRIM43-201ENST00000272395 RB1CC1Q8TDY2 1594 aa16.45■□□□□ 0.22
TRIM43-201ENST00000272395 DCAF1Q9Y4B6 1507 aa16.4■□□□□ 0.22
TRIM43-201ENST00000272395 MYO15BQ96JP2 1530 aa16.39■□□□□ 0.21
TRIM43-201ENST00000272395 SCRIBQ14160 1630 aa16.11■□□□□ 0.17
TRIM43-201ENST00000272395 PABPN1Q86U42 306 aaKnown RBP eCLIP16.06■□□□□ 0.16
TRIM43-201ENST00000272395 UNC13AQ9UPW8 1703 aa16.05■□□□□ 0.16
TRIM43-201ENST00000272395 BICRAQ9NZM4 1560 aa15.98■□□□□ 0.15
TRIM43-201ENST00000272395 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
TRIM43-201ENST00000272395 DNAJC5BQ9UF47 199 aa15.58■□□□□ 0.08
TRIM43-201ENST00000272395 EIF4G1Q04637 1599 aaKnown RBP15.53■□□□□ 0.08
TRIM43-201ENST00000272395 CECR2Q9BXF3 1484 aa15.53■□□□□ 0.08
TRIM43-201ENST00000272395 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
TRIM43-201ENST00000272395 SMARCA4P51532 1647 aa15.38■□□□□ 0.05
TRIM43-201ENST00000272395 BAZ1AQ9NRL2 1556 aaPredicted RBP15.37■□□□□ 0.05
TRIM43-201ENST00000272395 MROH2BQ7Z745 1585 aa15.37■□□□□ 0.05
TRIM43-201ENST00000272395 ATAD2BQ9ULI0 1458 aa15.28■□□□□ 0.04
TRIM43-201ENST00000272395 AEBP2Q6ZN18 517 aaPredicted RBP15.26■□□□□ 0.03
TRIM43-201ENST00000272395 RSF1Q96T23 1441 aaPredicted RBP15.25■□□□□ 0.03
TRIM43-201ENST00000272395 SMARCA2P51531 1590 aa15.22■□□□□ 0.03
TRIM43-201ENST00000272395 NCAPD3P42695 1498 aa15.21■□□□□ 0.03
TRIM43-201ENST00000272395 PEG3Q9GZU2 1588 aa15.19■□□□□ 0.02
TRIM43-201ENST00000272395 WIZO95785 1651 aa15.19■□□□□ 0.02
TRIM43-201ENST00000272395 BAZ1BQ9UIG0 1483 aaKnown RBP15.15■□□□□ 0.02
TRIM43-201ENST00000272395 HMGXB3Q12766 1538 aa15.13■□□□□ 0.01
TRIM43-201ENST00000272395 SUPT5HO00267 1087 aaKnown RBP15.06■□□□□ 0
TRIM43-201ENST00000272395 TOP2AP11388 1531 aaKnown RBP15.02□□□□□ -0.01
TRIM43-201ENST00000272395 CCDC88BA6NC98 1476 aa14.88□□□□□ -0.03
TRIM43-201ENST00000272395 NESP48681 1621 aa14.87□□□□□ -0.03
TRIM43-201ENST00000272395 CADPSQ9ULU8 1353 aa14.8□□□□□ -0.04
TRIM43-201ENST00000272395 LAMC3Q9Y6N6 1575 aa14.76□□□□□ -0.05
TRIM43-201ENST00000272395 CFTRP13569 1480 aa14.74□□□□□ -0.05
TRIM43-201ENST00000272395 ERCC6Q03468 1493 aa14.71□□□□□ -0.06
TRIM43-201ENST00000272395 PDS5BQ9NTI5 1447 aa14.68□□□□□ -0.06
TRIM43-201ENST00000272395 FANCD2Q9BXW9 1451 aa14.65□□□□□ -0.06
TRIM43-201ENST00000272395 KIF21AQ7Z4S6 1674 aa14.62□□□□□ -0.07
TRIM43-201ENST00000272395 CEP164Q9UPV0 1460 aa14.59□□□□□ -0.07
TRIM43-201ENST00000272395 PRDM2Q13029 1718 aa14.54□□□□□ -0.08
TRIM43-201ENST00000272395 THOC2Q8NI27 1593 aaKnown RBP14.54□□□□□ -0.08
TRIM43-201ENST00000272395 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
TRIM43-201ENST00000272395 CHIC1Q5VXU3 224 aa14.53□□□□□ -0.08
TRIM43-201ENST00000272395 URB2Q14146 1524 aaKnown RBP14.5□□□□□ -0.09
TRIM43-201ENST00000272395 WDR62O43379 1518 aa14.47□□□□□ -0.09
TRIM43-201ENST00000272395 CUX2O14529 1486 aa14.44□□□□□ -0.1
TRIM43-201ENST00000272395 TOPBP1Q92547 1522 aa14.42□□□□□ -0.1
TRIM43-201ENST00000272395 ABCC8Q09428 1581 aa14.41□□□□□ -0.1
TRIM43-201ENST00000272395 CUX1P39880 1505 aa14.4□□□□□ -0.1
TRIM43-201ENST00000272395 DNMBPQ6XZF7 1577 aa14.39□□□□□ -0.11
TRIM43-201ENST00000272395 WRNQ14191 1432 aaPredicted RBP eCLIP14.36□□□□□ -0.11
TRIM43-201ENST00000272395 SYNJ1O43426 1573 aa14.33□□□□□ -0.12
TRIM43-201ENST00000272395 POLA1P09884 1462 aaPredicted RBP14.32□□□□□ -0.12
TRIM43-201ENST00000272395 FGD5Q6ZNL6 1462 aa14.32□□□□□ -0.12
TRIM43-201ENST00000272395 RAD54L2Q9Y4B4 1467 aa14.29□□□□□ -0.12
TRIM43-201ENST00000272395 TOP2BQ02880 1626 aa14.27□□□□□ -0.12
TRIM43-201ENST00000272395 IFT140Q96RY7 1462 aa14.27□□□□□ -0.12
TRIM43-201ENST00000272395 SOGA1O94964 1423 aa14.27□□□□□ -0.13
TRIM43-201ENST00000272395 BIVM-ERCC5R4GMW8 1640 aa14.26□□□□□ -0.13
TRIM43-201ENST00000272395 ZNF608Q9ULD9 1512 aaPredicted RBP14.25□□□□□ -0.13
TRIM43-201ENST00000272395 TARBP1Q13395 1621 aaKnown RBP14.23□□□□□ -0.13
TRIM43-201ENST00000272395 TDRD9Q8NDG6 1382 aaKnown RBP14.2□□□□□ -0.14
TRIM43-201ENST00000272395 AQRO60306 1485 aaKnown RBP eCLIP14.19□□□□□ -0.14
TRIM43-201ENST00000272395 TRIM41Q8WV44 630 aa14.17□□□□□ -0.14
TRIM43-201ENST00000272395 ABCA10Q8WWZ4 1543 aa14.16□□□□□ -0.14
TRIM43-201ENST00000272395 EIF4G3O43432 1585 aaKnown RBP14.15□□□□□ -0.14
TRIM43-201ENST00000272395 WDR97A6NE52 1622 aa14.13□□□□□ -0.15
TRIM43-201ENST00000272395 GAPVD1Q14C86 1478 aa14.09□□□□□ -0.15
TRIM43-201ENST00000272395 ABCA5Q8WWZ7 1642 aa14.08□□□□□ -0.16
TRIM43-201ENST00000272395 HRCP23327 699 aa14.07□□□□□ -0.16
TRIM43-201ENST00000272395 GRIN2BQ13224 1484 aa14.06□□□□□ -0.16
TRIM43-201ENST00000272395 SNAPC4Q5SXM2 1469 aa14.05□□□□□ -0.16
TRIM43-201ENST00000272395 KIF27Q86VH2 1401 aa14.04□□□□□ -0.16
TRIM43-201ENST00000272395 RUSC2Q8N2Y8 1516 aa14.03□□□□□ -0.16
TRIM43-201ENST00000272395 FBLN2P98095 1184 aa14.01□□□□□ -0.17
TRIM43-201ENST00000272395 PBRM1Q86U86 1689 aa14□□□□□ -0.17
TRIM43-201ENST00000272395 MAGI1Q96QZ7 1491 aaPredicted RBP13.99□□□□□ -0.17
TRIM43-201ENST00000272395 IGF1RP08069 1367 aa13.98□□□□□ -0.17
TRIM43-201ENST00000272395 ERICH3Q5RHP9 1530 aa13.97□□□□□ -0.17
TRIM43-201ENST00000272395 LOC105371045A0A1W2PR82 267 aa13.97□□□□□ -0.17
TRIM43-201ENST00000272395 CHMP7Q8WUX9 453 aaPredicted RBP13.95□□□□□ -0.18
TRIM43-201ENST00000272395 PCGF6Q9BYE7 350 aa13.95□□□□□ -0.18
TRIM43-201ENST00000272395 ADAMTS12P58397 1594 aa13.94□□□□□ -0.18
TRIM43-201ENST00000272395 SYNJ2O15056 1496 aa13.94□□□□□ -0.18
TRIM43-201ENST00000272395 FAM9AQ8IZU1 332 aaPredicted RBP13.94□□□□□ -0.18
TRIM43-201ENST00000272395 FHAD1B1AJZ9 1412 aa13.93□□□□□ -0.18
TRIM43-201ENST00000272395 CHD1O14646 1710 aa13.91□□□□□ -0.18
TRIM43-201ENST00000272395 OSCARQ8IYS5 282 aa13.91□□□□□ -0.18
TRIM43-201ENST00000272395 CARMIL1Q5VZK9 1371 aa13.89□□□□□ -0.19
TRIM43-201ENST00000272395 GRIN2AQ12879 1464 aa13.88□□□□□ -0.19
TRIM43-201ENST00000272395 TRIM26Q12899 539 aaPredicted RBP13.86□□□□□ -0.19
TRIM43-201ENST00000272395 CSRNP3Q8WYN3 585 aa13.86□□□□□ -0.19
TRIM43-201ENST00000272395 CUL7Q14999 1698 aa13.86□□□□□ -0.19
TRIM43-201ENST00000272395 EEA1Q15075 1411 aa13.85□□□□□ -0.19
TRIM43-201ENST00000272395 DNAJC5Q9H3Z4 198 aa13.82□□□□□ -0.2
TRIM43-201ENST00000272395 CEP170Q5SW79 1584 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms