RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 NISCHQ9Y2I1 1504 aa24.58■■□□□ 1.53
MSH3-201ENST00000265081 CCDC180Q9P1Z9 1646 aa21.38■■□□□ 1.01
MSH3-201ENST00000265081 ZCCHC6Q5VYS8 1495 aaKnown RBP20.84■□□□□ 0.93
MSH3-201ENST00000265081 DCAF1Q9Y4B6 1507 aa20.5■□□□□ 0.87
MSH3-201ENST00000265081 MYO15BQ96JP2 1530 aa20.07■□□□□ 0.8
MSH3-201ENST00000265081 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
MSH3-201ENST00000265081 ABCC9O60706 1549 aa19.65■□□□□ 0.74
MSH3-201ENST00000265081 NACADO15069 1562 aa19.63■□□□□ 0.73
MSH3-201ENST00000265081 SCRIBQ14160 1630 aa19.47■□□□□ 0.71
MSH3-201ENST00000265081 DCAF8L2P0C7V8 631 aa19.44■□□□□ 0.7
MSH3-201ENST00000265081 SUPT5HO00267 1087 aaKnown RBP19.42■□□□□ 0.7
MSH3-201ENST00000265081 RB1CC1Q8TDY2 1594 aa19.28■□□□□ 0.68
MSH3-201ENST00000265081 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
MSH3-201ENST00000265081 UNC13AQ9UPW8 1703 aa19.15■□□□□ 0.66
MSH3-201ENST00000265081 CHIC1Q5VXU3 224 aa19.13■□□□□ 0.65
MSH3-201ENST00000265081 MROH2BQ7Z745 1585 aa18.98■□□□□ 0.63
MSH3-201ENST00000265081 CECR2Q9BXF3 1484 aa18.97■□□□□ 0.63
MSH3-201ENST00000265081 BAZ1AQ9NRL2 1556 aaPredicted RBP18.96■□□□□ 0.63
MSH3-201ENST00000265081 WIZO95785 1651 aa18.89■□□□□ 0.61
MSH3-201ENST00000265081 EIF4G1Q04637 1599 aaKnown RBP18.88■□□□□ 0.61
MSH3-201ENST00000265081 SMARCA4P51532 1647 aa18.83■□□□□ 0.61
MSH3-201ENST00000265081 BICRAQ9NZM4 1560 aa18.83■□□□□ 0.6
MSH3-201ENST00000265081 TOP2AP11388 1531 aaKnown RBP18.74■□□□□ 0.59
MSH3-201ENST00000265081 PEG3Q9GZU2 1588 aa18.72■□□□□ 0.59
MSH3-201ENST00000265081 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
MSH3-201ENST00000265081 CCDC88BA6NC98 1476 aa18.46■□□□□ 0.55
MSH3-201ENST00000265081 TRIM41Q8WV44 630 aa18.3■□□□□ 0.52
MSH3-201ENST00000265081 ATAD2BQ9ULI0 1458 aa18.29■□□□□ 0.52
MSH3-201ENST00000265081 LOC105371045A0A1W2PR82 267 aa18.28■□□□□ 0.52
MSH3-201ENST00000265081 ABCC8Q09428 1581 aa18.22■□□□□ 0.51
MSH3-201ENST00000265081 HMGXB3Q12766 1538 aa18.19■□□□□ 0.5
MSH3-201ENST00000265081 PABPN1Q86U42 306 aaKnown RBP eCLIP18.14■□□□□ 0.5
MSH3-201ENST00000265081 BAZ1BQ9UIG0 1483 aaKnown RBP18.13■□□□□ 0.49
MSH3-201ENST00000265081 EEA1Q15075 1411 aa18.08■□□□□ 0.49
MSH3-201ENST00000265081 NCAPD3P42695 1498 aa18.07■□□□□ 0.48
MSH3-201ENST00000265081 HRCP23327 699 aa18.06■□□□□ 0.48
MSH3-201ENST00000265081 SYNJ1O43426 1573 aa18.05■□□□□ 0.48
MSH3-201ENST00000265081 PRDM2Q13029 1718 aa18.04■□□□□ 0.48
MSH3-201ENST00000265081 BIVM-ERCC5R4GMW8 1640 aa18.03■□□□□ 0.48
MSH3-201ENST00000265081 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
MSH3-201ENST00000265081 TOP2BQ02880 1626 aa17.98■□□□□ 0.47
MSH3-201ENST00000265081 KIF21BO75037 1637 aa17.97■□□□□ 0.47
MSH3-201ENST00000265081 TRIM26Q12899 539 aaPredicted RBP17.95■□□□□ 0.46
MSH3-201ENST00000265081 PCGF6Q9BYE7 350 aa17.94■□□□□ 0.46
MSH3-201ENST00000265081 SOGA1O94964 1423 aa17.93■□□□□ 0.46
MSH3-201ENST00000265081 TNIKQ9UKE5 1360 aa17.87■□□□□ 0.45
MSH3-201ENST00000265081 RUSC2Q8N2Y8 1516 aa17.87■□□□□ 0.45
MSH3-201ENST00000265081 FAM9AQ8IZU1 332 aaPredicted RBP17.83■□□□□ 0.45
MSH3-201ENST00000265081 CFTRP13569 1480 aa17.82■□□□□ 0.44
MSH3-201ENST00000265081 GOLGA3Q08378 1498 aa17.81■□□□□ 0.44
MSH3-201ENST00000265081 CEP162Q5TB80 1403 aa17.78■□□□□ 0.44
MSH3-201ENST00000265081 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
MSH3-201ENST00000265081 CUX1P39880 1505 aa17.74■□□□□ 0.43
MSH3-201ENST00000265081 CSRNP3Q8WYN3 585 aa17.72■□□□□ 0.43
MSH3-201ENST00000265081 ERICH3Q5RHP9 1530 aa17.72■□□□□ 0.43
MSH3-201ENST00000265081 CC2D2AQ9P2K1 1620 aa17.68■□□□□ 0.42
MSH3-201ENST00000265081 PRXQ9BXM0 1461 aa17.64■□□□□ 0.41
MSH3-201ENST00000265081 RAPGEF2Q9Y4G8 1499 aa17.58■□□□□ 0.4
MSH3-201ENST00000265081 CADPSQ9ULU8 1353 aa17.52■□□□□ 0.4
MSH3-201ENST00000265081 ZEB1P37275 1124 aaPredicted RBP17.5■□□□□ 0.39
MSH3-201ENST00000265081 VPS8Q8N3P4 1428 aa17.48■□□□□ 0.39
MSH3-201ENST00000265081 CLIP1P30622 1438 aa17.46■□□□□ 0.39
MSH3-201ENST00000265081 KIF27Q86VH2 1401 aa17.45■□□□□ 0.38
MSH3-201ENST00000265081 WDR97A6NE52 1622 aa17.43■□□□□ 0.38
MSH3-201ENST00000265081 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
MSH3-201ENST00000265081 DNMBPQ6XZF7 1577 aa17.43■□□□□ 0.38
MSH3-201ENST00000265081 PPARGC1BQ86YN6 1023 aaKnown RBP17.42■□□□□ 0.38
MSH3-201ENST00000265081 ARAP1Q96P48 1450 aa17.41■□□□□ 0.38
MSH3-201ENST00000265081 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
MSH3-201ENST00000265081 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
MSH3-201ENST00000265081 FANCD2Q9BXW9 1451 aa17.35■□□□□ 0.37
MSH3-201ENST00000265081 UBTFP17480 764 aaKnown RBP17.35■□□□□ 0.37
MSH3-201ENST00000265081 ABCA10Q8WWZ4 1543 aa17.32■□□□□ 0.36
MSH3-201ENST00000265081 CUL7Q14999 1698 aa17.29■□□□□ 0.36
MSH3-201ENST00000265081 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
MSH3-201ENST00000265081 IGF1RP08069 1367 aa17.29■□□□□ 0.36
MSH3-201ENST00000265081 MAP3K1Q13233 1512 aa17.26■□□□□ 0.35
MSH3-201ENST00000265081 CUX2O14529 1486 aa17.26■□□□□ 0.35
MSH3-201ENST00000265081 ARHGAP35Q9NRY4 1499 aa17.26■□□□□ 0.35
MSH3-201ENST00000265081 ABCA5Q8WWZ7 1642 aa17.24■□□□□ 0.35
MSH3-201ENST00000265081 POLA1P09884 1462 aaPredicted RBP17.23■□□□□ 0.35
MSH3-201ENST00000265081 CTTNBP2Q8WZ74 1663 aa17.22■□□□□ 0.35
MSH3-201ENST00000265081 NESP48681 1621 aa17.2■□□□□ 0.34
MSH3-201ENST00000265081 URB2Q14146 1524 aaKnown RBP17.19■□□□□ 0.34
MSH3-201ENST00000265081 KIF21AQ7Z4S6 1674 aa17.19■□□□□ 0.34
MSH3-201ENST00000265081 CFAP43Q8NDM7 1665 aa17.19■□□□□ 0.34
MSH3-201ENST00000265081 RRBP1Q9P2E9 1410 aaKnown RBP17.14■□□□□ 0.33
MSH3-201ENST00000265081 TARBP1Q13395 1621 aaKnown RBP17.14■□□□□ 0.33
MSH3-201ENST00000265081 EFCAB5A4FU69 1503 aa17.13■□□□□ 0.33
MSH3-201ENST00000265081 CARMIL1Q5VZK9 1371 aa17.13■□□□□ 0.33
MSH3-201ENST00000265081 TIAM1Q13009 1591 aa17.12■□□□□ 0.33
MSH3-201ENST00000265081 RAD54L2Q9Y4B4 1467 aa17.1■□□□□ 0.33
MSH3-201ENST00000265081 SAMD9Q5K651 1589 aa17.08■□□□□ 0.32
MSH3-201ENST00000265081 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.32
MSH3-201ENST00000265081 PDS5BQ9NTI5 1447 aa17.06■□□□□ 0.32
MSH3-201ENST00000265081 PBRM1Q86U86 1689 aa17.04■□□□□ 0.32
MSH3-201ENST00000265081 PCF11O94913 1555 aaKnown RBP17.03■□□□□ 0.32
MSH3-201ENST00000265081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.03■□□□□ 0.32
MSH3-201ENST00000265081 FYCO1Q9BQS8 1478 aa16.99■□□□□ 0.31
MSH3-201ENST00000265081 LRRIQ1Q96JM4 1722 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms