RNA–Protein interactions for RNA: ENST00000258613.4

THSD1-201, Transcript of thrombospondin type 1 domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene THSD1, Length 2,962 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THSD1-201ENST00000258613 NISCHQ9Y2I1 1504 aa28.05■■■□□ 2.08
THSD1-201ENST00000258613 SHROOM4Q9ULL8 1493 aa24■■□□□ 1.43
THSD1-201ENST00000258613 CCDC180Q9P1Z9 1646 aa23.85■■□□□ 1.41
THSD1-201ENST00000258613 DCAF8L2P0C7V8 631 aa23.77■■□□□ 1.4
THSD1-201ENST00000258613 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
THSD1-201ENST00000258613 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
THSD1-201ENST00000258613 DCAF1Q9Y4B6 1507 aa22.82■■□□□ 1.24
THSD1-201ENST00000258613 ABCC9O60706 1549 aa22.77■■□□□ 1.24
THSD1-201ENST00000258613 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
THSD1-201ENST00000258613 CHIC1Q5VXU3 224 aa22.38■■□□□ 1.17
THSD1-201ENST00000258613 MYO15BQ96JP2 1530 aa22.26■■□□□ 1.15
THSD1-201ENST00000258613 NACADO15069 1562 aa22.19■■□□□ 1.14
THSD1-201ENST00000258613 RSF1Q96T23 1441 aaPredicted RBP22.13■■□□□ 1.13
THSD1-201ENST00000258613 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
THSD1-201ENST00000258613 RB1CC1Q8TDY2 1594 aa21.95■■□□□ 1.1
THSD1-201ENST00000258613 MROH2BQ7Z745 1585 aa21.88■■□□□ 1.09
THSD1-201ENST00000258613 LOC105371045A0A1W2PR82 267 aa21.87■■□□□ 1.09
THSD1-201ENST00000258613 PABPN1Q86U42 306 aaKnown RBP eCLIP21.82■■□□□ 1.08
THSD1-201ENST00000258613 WIZO95785 1651 aa21.76■■□□□ 1.07
THSD1-201ENST00000258613 UNC13AQ9UPW8 1703 aa21.71■■□□□ 1.07
THSD1-201ENST00000258613 FAM9AQ8IZU1 332 aaPredicted RBP21.65■■□□□ 1.06
THSD1-201ENST00000258613 TRIM41Q8WV44 630 aa21.64■■□□□ 1.05
THSD1-201ENST00000258613 EHMT2Q96KQ7 1210 aa21.63■■□□□ 1.05
THSD1-201ENST00000258613 BAZ1AQ9NRL2 1556 aaPredicted RBP21.52■■□□□ 1.04
THSD1-201ENST00000258613 BICRAQ9NZM4 1560 aa21.46■■□□□ 1.03
THSD1-201ENST00000258613 SMARCA4P51532 1647 aa21.43■■□□□ 1.02
THSD1-201ENST00000258613 PCGF6Q9BYE7 350 aa21.41■■□□□ 1.02
THSD1-201ENST00000258613 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
THSD1-201ENST00000258613 TOP2AP11388 1531 aaKnown RBP21.26■□□□□ 0.99
THSD1-201ENST00000258613 ABCC8Q09428 1581 aa21.2■□□□□ 0.98
THSD1-201ENST00000258613 SMARCA2P51531 1590 aa21.2■□□□□ 0.98
THSD1-201ENST00000258613 EIF4G1Q04637 1599 aaKnown RBP21.14■□□□□ 0.98
THSD1-201ENST00000258613 PPARGC1BQ86YN6 1023 aaKnown RBP21.03■□□□□ 0.96
THSD1-201ENST00000258613 ATAD2BQ9ULI0 1458 aa21.01■□□□□ 0.95
THSD1-201ENST00000258613 HRCP23327 699 aa20.97■□□□□ 0.95
THSD1-201ENST00000258613 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
THSD1-201ENST00000258613 SOGA1O94964 1423 aa20.93■□□□□ 0.94
THSD1-201ENST00000258613 PEG3Q9GZU2 1588 aa20.92■□□□□ 0.94
THSD1-201ENST00000258613 TRIM26Q12899 539 aaPredicted RBP20.9■□□□□ 0.94
THSD1-201ENST00000258613 RUSC2Q8N2Y8 1516 aa20.89■□□□□ 0.94
THSD1-201ENST00000258613 TTBK1Q5TCY1 1321 aaPredicted RBP20.78■□□□□ 0.92
THSD1-201ENST00000258613 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
THSD1-201ENST00000258613 CSRNP3Q8WYN3 585 aa20.73■□□□□ 0.91
THSD1-201ENST00000258613 UBTFP17480 764 aaKnown RBP20.72■□□□□ 0.91
THSD1-201ENST00000258613 SYNJ1O43426 1573 aa20.71■□□□□ 0.91
THSD1-201ENST00000258613 RANGAP1P46060 587 aaPredicted RBP20.62■□□□□ 0.89
THSD1-201ENST00000258613 NCAPD3P42695 1498 aa20.6■□□□□ 0.89
THSD1-201ENST00000258613 CEP162Q5TB80 1403 aa20.57■□□□□ 0.88
THSD1-201ENST00000258613 HMGXB3Q12766 1538 aa20.5■□□□□ 0.87
THSD1-201ENST00000258613 TNIKQ9UKE5 1360 aa20.49■□□□□ 0.87
THSD1-201ENST00000258613 EEA1Q15075 1411 aa20.47■□□□□ 0.87
THSD1-201ENST00000258613 GOLGA3Q08378 1498 aa20.43■□□□□ 0.86
THSD1-201ENST00000258613 RAPGEF2Q9Y4G8 1499 aa20.39■□□□□ 0.86
THSD1-201ENST00000258613 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
THSD1-201ENST00000258613 CC2D2AQ9P2K1 1620 aa20.38■□□□□ 0.85
THSD1-201ENST00000258613 CUX1P39880 1505 aa20.37■□□□□ 0.85
THSD1-201ENST00000258613 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.36■□□□□ 0.85
THSD1-201ENST00000258613 CFTRP13569 1480 aa20.36■□□□□ 0.85
THSD1-201ENST00000258613 CEP164Q9UPV0 1460 aa20.34■□□□□ 0.85
THSD1-201ENST00000258613 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
THSD1-201ENST00000258613 BIVM-ERCC5R4GMW8 1640 aa20.28■□□□□ 0.84
THSD1-201ENST00000258613 CLIP1P30622 1438 aa20.27■□□□□ 0.84
THSD1-201ENST00000258613 KIF21BO75037 1637 aa20.26■□□□□ 0.83
THSD1-201ENST00000258613 CADPSQ9ULU8 1353 aa20.25■□□□□ 0.83
THSD1-201ENST00000258613 NESP48681 1621 aa20.19■□□□□ 0.82
THSD1-201ENST00000258613 CCER1Q8TC90 406 aaPredicted RBP20.17■□□□□ 0.82
THSD1-201ENST00000258613 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
THSD1-201ENST00000258613 PRXQ9BXM0 1461 aa20.12■□□□□ 0.81
THSD1-201ENST00000258613 ZEB1P37275 1124 aaPredicted RBP20.11■□□□□ 0.81
THSD1-201ENST00000258613 CUX2O14529 1486 aa20.1■□□□□ 0.81
THSD1-201ENST00000258613 HNRNPUL2Q1KMD3 747 aaKnown RBP20.1■□□□□ 0.81
THSD1-201ENST00000258613 FGD5Q6ZNL6 1462 aa20.08■□□□□ 0.8
THSD1-201ENST00000258613 FANCD2Q9BXW9 1451 aa20.07■□□□□ 0.8
THSD1-201ENST00000258613 VPS8Q8N3P4 1428 aa20.07■□□□□ 0.8
THSD1-201ENST00000258613 APLP2Q06481 763 aa20.06■□□□□ 0.8
THSD1-201ENST00000258613 PRDM2Q13029 1718 aa20.05■□□□□ 0.8
THSD1-201ENST00000258613 PELP1Q8IZL8 1130 aaKnown RBP20.04■□□□□ 0.8
THSD1-201ENST00000258613 IGF1RP08069 1367 aa20.03■□□□□ 0.8
THSD1-201ENST00000258613 RAD54L2Q9Y4B4 1467 aa20.01■□□□□ 0.79
THSD1-201ENST00000258613 KANK4Q5T7N3 995 aaPredicted RBP19.98■□□□□ 0.79
THSD1-201ENST00000258613 ERICH3Q5RHP9 1530 aa19.98■□□□□ 0.79
THSD1-201ENST00000258613 ARAP1Q96P48 1450 aa19.98■□□□□ 0.79
THSD1-201ENST00000258613 P3H3Q8IVL6 736 aa19.95■□□□□ 0.78
THSD1-201ENST00000258613 CARMIL1Q5VZK9 1371 aa19.93■□□□□ 0.78
THSD1-201ENST00000258613 TOPBP1Q92547 1522 aa19.89■□□□□ 0.77
THSD1-201ENST00000258613 POLA1P09884 1462 aaPredicted RBP19.88■□□□□ 0.77
THSD1-201ENST00000258613 ARHGAP35Q9NRY4 1499 aa19.87■□□□□ 0.77
THSD1-201ENST00000258613 TDRD9Q8NDG6 1382 aaKnown RBP19.83■□□□□ 0.77
THSD1-201ENST00000258613 ATP1B4Q9UN42 357 aaPredicted RBP19.83■□□□□ 0.76
THSD1-201ENST00000258613 URB2Q14146 1524 aaKnown RBP19.82■□□□□ 0.76
THSD1-201ENST00000258613 DNMBPQ6XZF7 1577 aa19.82■□□□□ 0.76
THSD1-201ENST00000258613 ITGAEP38570 1179 aa19.78■□□□□ 0.76
THSD1-201ENST00000258613 LAMC3Q9Y6N6 1575 aa19.73■□□□□ 0.75
THSD1-201ENST00000258613 ABCA10Q8WWZ4 1543 aa19.73■□□□□ 0.75
THSD1-201ENST00000258613 KIF21AQ7Z4S6 1674 aa19.71■□□□□ 0.75
THSD1-201ENST00000258613 PDS5BQ9NTI5 1447 aa19.69■□□□□ 0.74
THSD1-201ENST00000258613 FHOD3Q2V2M9 1422 aa19.67■□□□□ 0.74
THSD1-201ENST00000258613 GAPVD1Q14C86 1478 aa19.59■□□□□ 0.73
THSD1-201ENST00000258613 AQRO60306 1485 aaKnown RBP eCLIP19.56■□□□□ 0.72
THSD1-201ENST00000258613 WDR97A6NE52 1622 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms