RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 NISCHQ9Y2I1 1504 aa24■■□□□ 1.43
HMGCL-201ENST00000235958 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
HMGCL-201ENST00000235958 ABCC9O60706 1549 aa20.48■□□□□ 0.87
HMGCL-201ENST00000235958 DCAF8L2P0C7V8 631 aa20.11■□□□□ 0.81
HMGCL-201ENST00000235958 ZCCHC6Q5VYS8 1495 aaKnown RBP19.99■□□□□ 0.79
HMGCL-201ENST00000235958 NACADO15069 1562 aa19.83■□□□□ 0.77
HMGCL-201ENST00000235958 DCAF1Q9Y4B6 1507 aa19.82■□□□□ 0.76
HMGCL-201ENST00000235958 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
HMGCL-201ENST00000235958 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
HMGCL-201ENST00000235958 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
HMGCL-201ENST00000235958 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
HMGCL-201ENST00000235958 PABPN1Q86U42 306 aaKnown RBP eCLIP19.29■□□□□ 0.68
HMGCL-201ENST00000235958 SHROOM4Q9ULL8 1493 aa19.23■□□□□ 0.67
HMGCL-201ENST00000235958 BICRAQ9NZM4 1560 aa19.19■□□□□ 0.66
HMGCL-201ENST00000235958 CECR2Q9BXF3 1484 aa18.7■□□□□ 0.58
HMGCL-201ENST00000235958 DNAJC5BQ9UF47 199 aa18.65■□□□□ 0.58
HMGCL-201ENST00000235958 EIF4G1Q04637 1599 aaKnown RBP18.64■□□□□ 0.57
HMGCL-201ENST00000235958 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
HMGCL-201ENST00000235958 SMARCA4P51532 1647 aa18.52■□□□□ 0.55
HMGCL-201ENST00000235958 MROH2BQ7Z745 1585 aa18.51■□□□□ 0.55
HMGCL-201ENST00000235958 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
HMGCL-201ENST00000235958 RSF1Q96T23 1441 aaPredicted RBP18.43■□□□□ 0.54
HMGCL-201ENST00000235958 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.53
HMGCL-201ENST00000235958 SMARCA2P51531 1590 aa18.34■□□□□ 0.53
HMGCL-201ENST00000235958 NCAPD3P42695 1498 aa18.34■□□□□ 0.53
HMGCL-201ENST00000235958 WIZO95785 1651 aa18.32■□□□□ 0.52
HMGCL-201ENST00000235958 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
HMGCL-201ENST00000235958 SUPT5HO00267 1087 aaKnown RBP18.31■□□□□ 0.52
HMGCL-201ENST00000235958 BAZ1BQ9UIG0 1483 aaKnown RBP18.23■□□□□ 0.51
HMGCL-201ENST00000235958 HMGXB3Q12766 1538 aa18.19■□□□□ 0.5
HMGCL-201ENST00000235958 TOP2AP11388 1531 aaKnown RBP18.09■□□□□ 0.49
HMGCL-201ENST00000235958 CCDC88BA6NC98 1476 aa17.96■□□□□ 0.47
HMGCL-201ENST00000235958 CADPSQ9ULU8 1353 aa17.85■□□□□ 0.45
HMGCL-201ENST00000235958 NESP48681 1621 aa17.82■□□□□ 0.44
HMGCL-201ENST00000235958 CFTRP13569 1480 aa17.77■□□□□ 0.44
HMGCL-201ENST00000235958 LAMC3Q9Y6N6 1575 aa17.75■□□□□ 0.43
HMGCL-201ENST00000235958 PDS5BQ9NTI5 1447 aa17.68■□□□□ 0.42
HMGCL-201ENST00000235958 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
HMGCL-201ENST00000235958 FANCD2Q9BXW9 1451 aa17.61■□□□□ 0.41
HMGCL-201ENST00000235958 PRDM2Q13029 1718 aa17.57■□□□□ 0.4
HMGCL-201ENST00000235958 KIF21AQ7Z4S6 1674 aa17.55■□□□□ 0.4
HMGCL-201ENST00000235958 CEP164Q9UPV0 1460 aa17.53■□□□□ 0.4
HMGCL-201ENST00000235958 MRC2Q9UBG0 1479 aa17.44■□□□□ 0.38
HMGCL-201ENST00000235958 URB2Q14146 1524 aaKnown RBP17.41■□□□□ 0.38
HMGCL-201ENST00000235958 THOC2Q8NI27 1593 aaKnown RBP17.38■□□□□ 0.37
HMGCL-201ENST00000235958 ABCC8Q09428 1581 aa17.37■□□□□ 0.37
HMGCL-201ENST00000235958 WRNQ14191 1432 aaPredicted RBP eCLIP17.35■□□□□ 0.37
HMGCL-201ENST00000235958 TOPBP1Q92547 1522 aa17.35■□□□□ 0.37
HMGCL-201ENST00000235958 WDR62O43379 1518 aa17.34■□□□□ 0.37
HMGCL-201ENST00000235958 CUX1P39880 1505 aa17.34■□□□□ 0.37
HMGCL-201ENST00000235958 DNMBPQ6XZF7 1577 aa17.32■□□□□ 0.36
HMGCL-201ENST00000235958 CUX2O14529 1486 aa17.27■□□□□ 0.36
HMGCL-201ENST00000235958 CHIC1Q5VXU3 224 aa17.26■□□□□ 0.35
HMGCL-201ENST00000235958 TRIM41Q8WV44 630 aa17.26■□□□□ 0.35
HMGCL-201ENST00000235958 SYNJ1O43426 1573 aa17.25■□□□□ 0.35
HMGCL-201ENST00000235958 TOP2BQ02880 1626 aa17.24■□□□□ 0.35
HMGCL-201ENST00000235958 SOGA1O94964 1423 aa17.22■□□□□ 0.35
HMGCL-201ENST00000235958 POLA1P09884 1462 aaPredicted RBP17.22■□□□□ 0.35
HMGCL-201ENST00000235958 FGD5Q6ZNL6 1462 aa17.22■□□□□ 0.35
HMGCL-201ENST00000235958 BIVM-ERCC5R4GMW8 1640 aa17.21■□□□□ 0.35
HMGCL-201ENST00000235958 RAD54L2Q9Y4B4 1467 aa17.18■□□□□ 0.34
HMGCL-201ENST00000235958 IFT140Q96RY7 1462 aa17.15■□□□□ 0.34
HMGCL-201ENST00000235958 TARBP1Q13395 1621 aaKnown RBP17.12■□□□□ 0.33
HMGCL-201ENST00000235958 TDRD9Q8NDG6 1382 aaKnown RBP17.1■□□□□ 0.33
HMGCL-201ENST00000235958 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
HMGCL-201ENST00000235958 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.32
HMGCL-201ENST00000235958 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
HMGCL-201ENST00000235958 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
HMGCL-201ENST00000235958 WDR97A6NE52 1622 aa16.99■□□□□ 0.31
HMGCL-201ENST00000235958 KIF27Q86VH2 1401 aa16.97■□□□□ 0.31
HMGCL-201ENST00000235958 RUSC2Q8N2Y8 1516 aa16.96■□□□□ 0.3
HMGCL-201ENST00000235958 EIF4G3O43432 1585 aaKnown RBP16.95■□□□□ 0.3
HMGCL-201ENST00000235958 IGF1RP08069 1367 aa16.93■□□□□ 0.3
HMGCL-201ENST00000235958 DNAJC5Q9H3Z4 198 aa16.93■□□□□ 0.3
HMGCL-201ENST00000235958 GRIN2BQ13224 1484 aa16.93■□□□□ 0.3
HMGCL-201ENST00000235958 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
HMGCL-201ENST00000235958 FAM9AQ8IZU1 332 aaPredicted RBP16.92■□□□□ 0.3
HMGCL-201ENST00000235958 CSRNP3Q8WYN3 585 aa16.88■□□□□ 0.29
HMGCL-201ENST00000235958 FBLN2P98095 1184 aa16.87■□□□□ 0.29
HMGCL-201ENST00000235958 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
HMGCL-201ENST00000235958 PBRM1Q86U86 1689 aa16.85■□□□□ 0.29
HMGCL-201ENST00000235958 CHMP7Q8WUX9 453 aaPredicted RBP16.85■□□□□ 0.29
HMGCL-201ENST00000235958 SNAPC4Q5SXM2 1469 aa16.84■□□□□ 0.29
HMGCL-201ENST00000235958 MAGI1Q96QZ7 1491 aaPredicted RBP16.82■□□□□ 0.28
HMGCL-201ENST00000235958 EEA1Q15075 1411 aa16.82■□□□□ 0.28
HMGCL-201ENST00000235958 CARMIL1Q5VZK9 1371 aa16.81■□□□□ 0.28
HMGCL-201ENST00000235958 FHAD1B1AJZ9 1412 aa16.79■□□□□ 0.28
HMGCL-201ENST00000235958 SYNJ2O15056 1496 aa16.77■□□□□ 0.28
HMGCL-201ENST00000235958 OSCARQ8IYS5 282 aa16.76■□□□□ 0.27
HMGCL-201ENST00000235958 ADAMTS12P58397 1594 aa16.72■□□□□ 0.27
HMGCL-201ENST00000235958 CUL7Q14999 1698 aa16.72■□□□□ 0.27
HMGCL-201ENST00000235958 PRXQ9BXM0 1461 aa16.71■□□□□ 0.27
HMGCL-201ENST00000235958 RAPGEF2Q9Y4G8 1499 aa16.71■□□□□ 0.27
HMGCL-201ENST00000235958 CHD1O14646 1710 aa16.7■□□□□ 0.26
HMGCL-201ENST00000235958 GRIN2AQ12879 1464 aa16.7■□□□□ 0.26
HMGCL-201ENST00000235958 EHMT2Q96KQ7 1210 aa16.69■□□□□ 0.26
HMGCL-201ENST00000235958 UBTFP17480 764 aaKnown RBP16.62■□□□□ 0.25
HMGCL-201ENST00000235958 NUP160Q12769 1436 aa16.62■□□□□ 0.25
HMGCL-201ENST00000235958 LOC105371045A0A1W2PR82 267 aa16.61■□□□□ 0.25
HMGCL-201ENST00000235958 CEP170Q5SW79 1584 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms