RNA–Protein interactions for RNA: ENST00000011653.8

CD4-201, Transcript of CD4 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD4, Length 3,114 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-201ENST00000011653 NISCHQ9Y2I1 1504 aa23.58■■□□□ 1.37
CD4-201ENST00000011653 CCDC180Q9P1Z9 1646 aa20.41■□□□□ 0.86
CD4-201ENST00000011653 DCAF8L2P0C7V8 631 aa20.21■□□□□ 0.83
CD4-201ENST00000011653 ABCC9O60706 1549 aa19.98■□□□□ 0.79
CD4-201ENST00000011653 ZCCHC6Q5VYS8 1495 aaKnown RBP19.71■□□□□ 0.75
CD4-201ENST00000011653 SHROOM4Q9ULL8 1493 aa19.65■□□□□ 0.74
CD4-201ENST00000011653 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
CD4-201ENST00000011653 NACADO15069 1562 aa19.16■□□□□ 0.66
CD4-201ENST00000011653 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
CD4-201ENST00000011653 RB1CC1Q8TDY2 1594 aa19.11■□□□□ 0.65
CD4-201ENST00000011653 MYO15BQ96JP2 1530 aa19.04■□□□□ 0.64
CD4-201ENST00000011653 PABPN1Q86U42 306 aaKnown RBP eCLIP18.98■□□□□ 0.63
CD4-201ENST00000011653 SUPT5HO00267 1087 aaKnown RBP18.85■□□□□ 0.61
CD4-201ENST00000011653 UNC13AQ9UPW8 1703 aa18.68■□□□□ 0.58
CD4-201ENST00000011653 BICRAQ9NZM4 1560 aa18.54■□□□□ 0.56
CD4-201ENST00000011653 CECR2Q9BXF3 1484 aa18.52■□□□□ 0.56
CD4-201ENST00000011653 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
CD4-201ENST00000011653 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
CD4-201ENST00000011653 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
CD4-201ENST00000011653 WIZO95785 1651 aa18.16■□□□□ 0.5
CD4-201ENST00000011653 SMARCA4P51532 1647 aa18.14■□□□□ 0.5
CD4-201ENST00000011653 EIF4G1Q04637 1599 aaKnown RBP18.06■□□□□ 0.48
CD4-201ENST00000011653 ATAD2BQ9ULI0 1458 aa17.96■□□□□ 0.47
CD4-201ENST00000011653 BAZ1BQ9UIG0 1483 aaKnown RBP17.91■□□□□ 0.46
CD4-201ENST00000011653 CC2D2AQ9P2K1 1620 aa17.87■□□□□ 0.45
CD4-201ENST00000011653 DNAJC5BQ9UF47 199 aa17.87■□□□□ 0.45
CD4-201ENST00000011653 SMARCA2P51531 1590 aa17.86■□□□□ 0.45
CD4-201ENST00000011653 TOP2AP11388 1531 aaKnown RBP17.82■□□□□ 0.44
CD4-201ENST00000011653 CCDC88BA6NC98 1476 aa17.78■□□□□ 0.44
CD4-201ENST00000011653 PEG3Q9GZU2 1588 aa17.75■□□□□ 0.43
CD4-201ENST00000011653 NCAPD3P42695 1498 aa17.75■□□□□ 0.43
CD4-201ENST00000011653 CHIC1Q5VXU3 224 aa17.71■□□□□ 0.43
CD4-201ENST00000011653 HMGXB3Q12766 1538 aa17.63■□□□□ 0.41
CD4-201ENST00000011653 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
CD4-201ENST00000011653 FAM9AQ8IZU1 332 aaPredicted RBP17.5■□□□□ 0.39
CD4-201ENST00000011653 EHMT2Q96KQ7 1210 aa17.47■□□□□ 0.39
CD4-201ENST00000011653 ABCC8Q09428 1581 aa17.46■□□□□ 0.38
CD4-201ENST00000011653 NESP48681 1621 aa17.45■□□□□ 0.38
CD4-201ENST00000011653 CADPSQ9ULU8 1353 aa17.41■□□□□ 0.38
CD4-201ENST00000011653 CFTRP13569 1480 aa17.34■□□□□ 0.37
CD4-201ENST00000011653 WRNQ14191 1432 aaPredicted RBP eCLIP17.29■□□□□ 0.36
CD4-201ENST00000011653 FANCD2Q9BXW9 1451 aa17.24■□□□□ 0.35
CD4-201ENST00000011653 LOC105371045A0A1W2PR82 267 aa17.23■□□□□ 0.35
CD4-201ENST00000011653 SYNJ1O43426 1573 aa17.16■□□□□ 0.34
CD4-201ENST00000011653 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
CD4-201ENST00000011653 LAMC3Q9Y6N6 1575 aa17.14■□□□□ 0.33
CD4-201ENST00000011653 ERCC6Q03468 1493 aa17.13■□□□□ 0.33
CD4-201ENST00000011653 CEP164Q9UPV0 1460 aa17.12■□□□□ 0.33
CD4-201ENST00000011653 SOGA1O94964 1423 aa17.12■□□□□ 0.33
CD4-201ENST00000011653 CUX1P39880 1505 aa17.1■□□□□ 0.33
CD4-201ENST00000011653 RUSC2Q8N2Y8 1516 aa17.08■□□□□ 0.32
CD4-201ENST00000011653 KIF21AQ7Z4S6 1674 aa17.05■□□□□ 0.32
CD4-201ENST00000011653 PRDM2Q13029 1718 aa17.02■□□□□ 0.32
CD4-201ENST00000011653 TOP2BQ02880 1626 aa17■□□□□ 0.31
CD4-201ENST00000011653 URB2Q14146 1524 aaKnown RBP17■□□□□ 0.31
CD4-201ENST00000011653 FGD5Q6ZNL6 1462 aa17■□□□□ 0.31
CD4-201ENST00000011653 TOPBP1Q92547 1522 aa16.99■□□□□ 0.31
CD4-201ENST00000011653 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
CD4-201ENST00000011653 RAD54L2Q9Y4B4 1467 aa16.99■□□□□ 0.31
CD4-201ENST00000011653 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
CD4-201ENST00000011653 UBTFP17480 764 aaKnown RBP16.94■□□□□ 0.3
CD4-201ENST00000011653 CUX2O14529 1486 aa16.93■□□□□ 0.3
CD4-201ENST00000011653 POLA1P09884 1462 aaPredicted RBP16.92■□□□□ 0.3
CD4-201ENST00000011653 DNMBPQ6XZF7 1577 aa16.92■□□□□ 0.3
CD4-201ENST00000011653 BIVM-ERCC5R4GMW8 1640 aa16.92■□□□□ 0.3
CD4-201ENST00000011653 TDRD9Q8NDG6 1382 aaKnown RBP16.92■□□□□ 0.3
CD4-201ENST00000011653 MRC2Q9UBG0 1479 aa16.91■□□□□ 0.3
CD4-201ENST00000011653 KIF27Q86VH2 1401 aa16.85■□□□□ 0.29
CD4-201ENST00000011653 HRCP23327 699 aa16.85■□□□□ 0.29
CD4-201ENST00000011653 AQRO60306 1485 aaKnown RBP eCLIP16.78■□□□□ 0.28
CD4-201ENST00000011653 EEA1Q15075 1411 aa16.78■□□□□ 0.28
CD4-201ENST00000011653 FBLN2P98095 1184 aa16.76■□□□□ 0.27
CD4-201ENST00000011653 ZNF608Q9ULD9 1512 aaPredicted RBP16.74■□□□□ 0.27
CD4-201ENST00000011653 IGF1RP08069 1367 aa16.74■□□□□ 0.27
CD4-201ENST00000011653 WDR62O43379 1518 aa16.73■□□□□ 0.27
CD4-201ENST00000011653 PCGF6Q9BYE7 350 aa16.73■□□□□ 0.27
CD4-201ENST00000011653 THOC2Q8NI27 1593 aaKnown RBP16.73■□□□□ 0.27
CD4-201ENST00000011653 RAPGEF2Q9Y4G8 1499 aa16.72■□□□□ 0.27
CD4-201ENST00000011653 ABCA10Q8WWZ4 1543 aa16.71■□□□□ 0.27
CD4-201ENST00000011653 CARMIL1Q5VZK9 1371 aa16.7■□□□□ 0.26
CD4-201ENST00000011653 GAPVD1Q14C86 1478 aa16.7■□□□□ 0.26
CD4-201ENST00000011653 GOLGA3Q08378 1498 aa16.66■□□□□ 0.26
CD4-201ENST00000011653 IFT140Q96RY7 1462 aa16.65■□□□□ 0.26
CD4-201ENST00000011653 TARBP1Q13395 1621 aaKnown RBP16.64■□□□□ 0.25
CD4-201ENST00000011653 PPARGC1BQ86YN6 1023 aaKnown RBP16.64■□□□□ 0.25
CD4-201ENST00000011653 TTBK1Q5TCY1 1321 aaPredicted RBP16.62■□□□□ 0.25
CD4-201ENST00000011653 P3H3Q8IVL6 736 aa16.61■□□□□ 0.25
CD4-201ENST00000011653 PRXQ9BXM0 1461 aa16.6■□□□□ 0.25
CD4-201ENST00000011653 CHMP7Q8WUX9 453 aaPredicted RBP16.59■□□□□ 0.25
CD4-201ENST00000011653 TNIKQ9UKE5 1360 aa16.57■□□□□ 0.24
CD4-201ENST00000011653 CEP162Q5TB80 1403 aa16.56■□□□□ 0.24
CD4-201ENST00000011653 WDR97A6NE52 1622 aa16.55■□□□□ 0.24
CD4-201ENST00000011653 KIF21BO75037 1637 aa16.54■□□□□ 0.24
CD4-201ENST00000011653 GRIN2BQ13224 1484 aa16.54■□□□□ 0.24
CD4-201ENST00000011653 ABCA5Q8WWZ7 1642 aa16.54■□□□□ 0.24
CD4-201ENST00000011653 SNAPC4Q5SXM2 1469 aa16.53■□□□□ 0.24
CD4-201ENST00000011653 EIF4G3O43432 1585 aaKnown RBP16.53■□□□□ 0.24
CD4-201ENST00000011653 ATP1B4Q9UN42 357 aaPredicted RBP16.5■□□□□ 0.23
CD4-201ENST00000011653 CLIP1P30622 1438 aa16.49■□□□□ 0.23
CD4-201ENST00000011653 ERICH3Q5RHP9 1530 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms