RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W RKM2Q03942 479 aa6.12□□□□□ -1.43
UBP8YMR223W RSA3Q05942 220 aaKnown RBP6.12□□□□□ -1.43
UBP8YMR223W ESC8Q08119 714 aa6.12□□□□□ -1.43
UBP8YMR223W SAM35P14693 329 aa6.11□□□□□ -1.43
UBP8YMR223W PPX1P38698 397 aa6.11□□□□□ -1.43
UBP8YMR223W YHL012WP38709 493 aa6.11□□□□□ -1.43
UBP8YMR223W XKS1P42826 600 aa6.11□□□□□ -1.43
UBP8YMR223W SRO9P25567 434 aaKnown RBP6.1□□□□□ -1.43
UBP8YMR223W SQT1P35184 431 aa6.1□□□□□ -1.43
UBP8YMR223W YKL222CP35995 705 aa6.1□□□□□ -1.43
UBP8YMR223W STM1P39015 273 aaKnown RBP6.1□□□□□ -1.43
UBP8YMR223W RSM26P47141 266 aa6.1□□□□□ -1.43
UBP8YMR223W FOL2P51601 243 aaKnown RBP6.1□□□□□ -1.43
UBP8YMR223W PEX13P80667 386 aa6.1□□□□□ -1.43
UBP8YMR223W ULP1Q02724 621 aa6.1□□□□□ -1.43
UBP8YMR223W SCP160P06105 1222 aaKnown RBP RIP-Chip data6.09□□□□□ -1.43not detected
UBP8YMR223W MRPL22P53881 309 aa6.09□□□□□ -1.43
UBP8YMR223W OXR1Q08952 273 aa6.09□□□□□ -1.43
UBP8YMR223W RDH54P38086 958 aa6.08□□□□□ -1.44
UBP8YMR223W SSF1P38789 453 aaPredicted RBP6.08□□□□□ -1.44
UBP8YMR223W PEX28P38848 579 aa6.08□□□□□ -1.44
UBP8YMR223W VPS53P47061 822 aa6.08□□□□□ -1.44
UBP8YMR223W DAL4Q04895 635 aa6.08□□□□□ -1.44
UBP8YMR223W QNS1P38795 714 aaKnown RBP6.08□□□□□ -1.44
UBP8YMR223W RIM8P53179 542 aa6.08□□□□□ -1.44
UBP8YMR223W ENV11P53246 860 aa6.08□□□□□ -1.44
UBP8YMR223W MSC6Q08818 692 aaKnown RBP6.08□□□□□ -1.44
UBP8YMR223W ADD66P36040 267 aa6.07□□□□□ -1.44
UBP8YMR223W ADI1Q03677 179 aa6.07□□□□□ -1.44
UBP8YMR223W YDL177CQ12257 170 aa6.07□□□□□ -1.44
UBP8YMR223W MET4P32389 672 aa6.06□□□□□ -1.44
UBP8YMR223W DAK2P43550 591 aa6.06□□□□□ -1.44
UBP8YMR223W SOD2P00447 233 aa6.05□□□□□ -1.44
UBP8YMR223W UGA4P32837 571 aa6.05□□□□□ -1.44
UBP8YMR223W YGL140CP53120 1219 aa6.05□□□□□ -1.44
UBP8YMR223W SNO2P53823 222 aa6.05□□□□□ -1.44
UBP8YMR223W YPL109CQ02981 657 aa6.05□□□□□ -1.44
UBP8YMR223W TAF13P11747 167 aa6.04□□□□□ -1.44
UBP8YMR223W AIM3P38266 947 aaKnown RBP6.04□□□□□ -1.44
UBP8YMR223W GIP4P39732 760 aa6.04□□□□□ -1.44
UBP8YMR223W TAF1P46677 1066 aa6.04□□□□□ -1.44
UBP8YMR223W YJL045WP47052 634 aa6.04□□□□□ -1.44
UBP8YMR223W SEC23P15303 768 aaKnown RBP6.03□□□□□ -1.44
UBP8YMR223W YSC84P32793 468 aa6.03□□□□□ -1.44
UBP8YMR223W FLR1P38124 548 aa6.03□□□□□ -1.44
UBP8YMR223W ETP1P38748 585 aaKnown RBP6.03□□□□□ -1.44
UBP8YMR223W NMD3P38861 518 aaKnown RBP6.03□□□□□ -1.44
UBP8YMR223W YNR063WP53749 607 aa6.03□□□□□ -1.44
UBP8YMR223W NBA1Q08229 501 aaKnown RBP6.03□□□□□ -1.44
UBP8YMR223W HDA2Q06629 674 aa6.02□□□□□ -1.45
UBP8YMR223W RSC58Q07979 502 aa6.02□□□□□ -1.45
UBP8YMR223W SEC20P28791 383 aa6.01□□□□□ -1.45
UBP8YMR223W EST2Q06163 884 aa6.01□□□□□ -1.45
UBP8YMR223W AIM26P32858 118 aa6□□□□□ -1.45
UBP8YMR223W UBP3Q01477 912 aaKnown RBP RIP-Chip data6□□□□□ -1.45not detected
UBP8YMR223W COQ4O13525 335 aa5.99□□□□□ -1.45
UBP8YMR223W HXK1P04806 485 aaKnown RBP5.99□□□□□ -1.45
UBP8YMR223W TOS4Q06266 489 aa5.99□□□□□ -1.45
UBP8YMR223W HEM13P11353 328 aaKnown RBP5.99□□□□□ -1.45
UBP8YMR223W BAP2P38084 609 aa5.99□□□□□ -1.45
UBP8YMR223W YPL277CQ08989 487 aa5.99□□□□□ -1.45
UBP8YMR223W WHI5Q12416 295 aa5.99□□□□□ -1.45
UBP8YMR223W RPS13P05756 151 aaKnown RBP5.98□□□□□ -1.45
UBP8YMR223W SPS1P08458 490 aa5.98□□□□□ -1.45
UBP8YMR223W CCZ1P38273 704 aa5.98□□□□□ -1.45
UBP8YMR223W HNT2P49775 206 aa5.98□□□□□ -1.45
UBP8YMR223W KIP1P28742 1111 aa5.97□□□□□ -1.45
UBP8YMR223W AFG2P32794 780 aa5.97□□□□□ -1.45
UBP8YMR223W FAA3P39002 694 aa5.97□□□□□ -1.45
UBP8YMR223W RPN3P40016 523 aaKnown RBP5.97□□□□□ -1.45
UBP8YMR223W THI12P42883 340 aa5.97□□□□□ -1.45
UBP8YMR223W THI5P43534 340 aa5.97□□□□□ -1.45
UBP8YMR223W ENT3P47160 408 aa5.97□□□□□ -1.45
UBP8YMR223W THI11P47183 340 aa5.97□□□□□ -1.45
UBP8YMR223W TNA1P53322 534 aa5.97□□□□□ -1.45
UBP8YMR223W HOS3Q02959 697 aaKnown RBP5.97□□□□□ -1.45
UBP8YMR223W THI13Q07748 340 aa5.97□□□□□ -1.45
UBP8YMR223W PTC5Q12511 572 aa5.97□□□□□ -1.45
UBP8YMR223W TOD6P34219 525 aa5.96□□□□□ -1.46
UBP8YMR223W PIC2P40035 300 aa5.96□□□□□ -1.46
UBP8YMR223W YPL260WQ08977 551 aa5.96□□□□□ -1.46
UBP8YMR223W MCD1Q12158 566 aa5.96□□□□□ -1.46
UBP8YMR223W YLR358CO13565 187 aa5.95□□□□□ -1.46
UBP8YMR223W RPT1P33299 467 aaKnown RBP5.95□□□□□ -1.46
UBP8YMR223W PIK1P39104 1066 aa5.95□□□□□ -1.46
UBP8YMR223W SEC26P41810 973 aaKnown RBP5.94□□□□□ -1.46
UBP8YMR223W YGR122WP53272 402 aa5.94□□□□□ -1.46
UBP8YMR223W YOR352WQ08816 343 aa5.94□□□□□ -1.46
UBP8YMR223W PRE10P21242 288 aaKnown RBP RIP-Chip data5.93□□□□□ -1.46not detected
UBP8YMR223W ALG3P38179 458 aa5.93□□□□□ -1.46
UBP8YMR223W MRPS18P42847 217 aa5.93□□□□□ -1.46
UBP8YMR223W YDR132CQ03900 495 aa5.93□□□□□ -1.46
UBP8YMR223W GSF2Q04697 403 aaKnown RBP5.93□□□□□ -1.46
UBP8YMR223W RCL1Q08096 367 aaPredicted RBP5.93□□□□□ -1.46
UBP8YMR223W CLU1Q03690 1277 aaKnown RBP5.92□□□□□ -1.46
UBP8YMR223W SGD1Q06132 899 aa5.92□□□□□ -1.46
UBP8YMR223W RSB1Q08417 382 aa5.92□□□□□ -1.46
UBP8YMR223W SNF5P18480 905 aa5.91□□□□□ -1.46
UBP8YMR223W PRE9P23638 258 aaKnown RBP5.91□□□□□ -1.46
UBP8YMR223W SIW14P53965 281 aa5.91□□□□□ -1.46
Retrieved 100 of 5,963 RNA–protein pairs in 36.5 ms