RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	KRE33	P53914	1056 aa	Known RBP	5.12	□□□□□ -1.59
CDC9	YDL164C	CIA1	Q05583	330 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	HDA2	Q06629	674 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	YDR056C	Q12025	205 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	MOD5	P07884	428 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	DBF20	P32328	564 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	SFP1	P32432	683 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	DAL3	P32459	195 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	CCC2	P38995	1004 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	GPP2	P40106	250 aa	Known RBP	5.12	□□□□□ -1.59
CDC9	YDL164C	BNI4	P53858	892 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	MTQ2	Q03920	221 aa	Predicted RBP	5.12	□□□□□ -1.59
CDC9	YDL164C	IRC3	Q06683	689 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	BMT6	Q12291	365 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	OSH2	Q12451	1283 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	RTP1	Q12751	981 aa		5.12	□□□□□ -1.59
CDC9	YDL164C	KCC4	P25389	1037 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	HSE1	P38753	452 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	NTA1	P40354	457 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	XKS1	P42826	600 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	MPP10	P47083	593 aa	Known RBP	5.11	□□□□□ -1.59
CDC9	YDL164C	VMS1	Q04311	632 aa	Known RBP	5.11	□□□□□ -1.59
CDC9	YDL164C	SSP2	Q08646	371 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	ARE1	P25628	610 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	BLI1	P35727	113 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	TYS1	P36421	394 aa	Known RBP	5.11	□□□□□ -1.59
CDC9	YDL164C	BAP2	P38084	609 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	ESL1	P40456	1118 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	NPY1	P53164	384 aa		5.11	□□□□□ -1.59
CDC9	YDL164C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
CDC9	YDL164C	NUP145	P49687	1317 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	MSS18	P08593	268 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	TPD3	P31383	635 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	MCM10	P32354	571 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	PSY2	P40164	858 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	RRD1	P40454	393 aa	Known RBP	5.1	□□□□□ -1.59
CDC9	YDL164C	ERR3	P42222	437 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	MON1	P53129	644 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	ERP6	P53198	216 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	RSC1	P53236	928 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	MRL1	Q06815	381 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	HBN1	Q96VH4	193 aa		5.1	□□□□□ -1.59
CDC9	YDL164C	YJL171C	P46992	396 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	REH1	Q06709	432 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	FAP7	Q12055	197 aa	Predicted RBP	5.09	□□□□□ -1.59
CDC9	YDL164C	SMC1	P32908	1225 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	RAD55	P38953	406 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	UBA2	P52488	636 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	NUT1	P53114	1132 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	VIP1	Q06685	1146 aa	Known RBP	5.09	□□□□□ -1.59
CDC9	YDL164C	CMR1	Q12510	522 aa	Known RBP	5.09	□□□□□ -1.59
CDC9	YDL164C	NHA1	Q99271	985 aa		5.09	□□□□□ -1.59
CDC9	YDL164C	PCL2	P25693	308 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	SPT23	P35210	1082 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	APL2	P36000	726 aa	Predicted RBP	5.08	□□□□□ -1.6
CDC9	YDL164C	PRE3	P38624	215 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	ISU1	Q03020	165 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	SDH5	Q08230	162 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	CDC31	P06704	161 aa	Known RBP	5.08	□□□□□ -1.6
CDC9	YDL164C	SSH4	P32343	579 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	MRP8	P35719	219 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	MBP1	P39678	833 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	ALR2	P43553	858 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	MET13	P53128	600 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	SDA1	P53313	767 aa	Known RBP	5.08	□□□□□ -1.6
CDC9	YDL164C	HOL1	P53389	586 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	RRP6	Q12149	733 aa	Known RBP	5.08	□□□□□ -1.6
CDC9	YDL164C	YPR015C	Q12531	247 aa		5.08	□□□□□ -1.6
CDC9	YDL164C	TRK1	P12685	1235 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	VBA3	P25594	458 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	SBA1	P28707	216 aa	Known RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	SWI3	P32591	825 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	TRZ1	P36159	838 aa	Predicted RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	MNT3	P40549	630 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	NIT2	P47016	307 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	YGL140C	P53120	1219 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	GRC3	Q07845	632 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	CHL1	P22516	861 aa	Predicted RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	URA1	P28272	314 aa	Predicted RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	PTP2	P29461	750 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	GCD11	P32481	527 aa	Known RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	MOT2	P34909	587 aa	Known RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	IRS4	P36115	615 aa	Known RBP	5.07	□□□□□ -1.6
CDC9	YDL164C	RDH54	P38086	958 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	MUM2	P38236	366 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	SAP155	P43612	1002 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	HEH2	Q03281	663 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	GIC2	Q06648	383 aa		5.07	□□□□□ -1.6
CDC9	YDL164C	PBY1	P38254	753 aa		5.06	□□□□□ -1.6
CDC9	YDL164C	BSD2	P38356	321 aa		5.06	□□□□□ -1.6
CDC9	YDL164C	HUL4	P40985	892 aa		5.06	□□□□□ -1.6
CDC9	YDL164C	YML082W	Q04533	649 aa	Known RBP	5.06	□□□□□ -1.6
CDC9	YDL164C	EMG1	Q06287	252 aa	Known RBP	5.06	□□□□□ -1.6
CDC9	YDL164C	TY4B-P	A0A0B7P3V8	1104 aa		5.06	□□□□□ -1.6
CDC9	YDL164C	SEC23	P15303	768 aa	Known RBP	5.06	□□□□□ -1.6
CDC9	YDL164C	PTC2	P39966	464 aa	Known RBP	5.06	□□□□□ -1.6
CDC9	YDL164C	ALA1	P40825	983 aa	Known RBP	5.06	□□□□□ -1.6
CDC9	YDL164C	TRS130	Q03660	1102 aa		5.06	□□□□□ -1.6
CDC9	YDL164C	MSH6	Q03834	1242 aa		5.06	□□□□□ -1.6
CDC9	YDL164C	TY4A-H	Q6Q5P6	413 aa		5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 45.2 ms