RNA–Protein interactions for RNA: YBR165W

UBS1, Transcript of Ubiquitin-conjugating enzyme suppressor that regulates Cdc34p, yeast

Gene UBS1, Length 834 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBS1	YBR165W	NFS1	P25374	497 aa		7.28	□□□□□ -1.24
UBS1	YBR165W	MCM2	P29469	868 aa		7.28	□□□□□ -1.24
UBS1	YBR165W	SEC8	P32855	1065 aa		7.28	□□□□□ -1.24
UBS1	YBR165W	WHI3	P34761	661 aa	Known RBP	7.28	□□□□□ -1.24
UBS1	YBR165W	OMA1	P36163	345 aa		7.28	□□□□□ -1.24
UBS1	YBR165W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	7.27	□□□□□ -1.25	RIP-Chip
UBS1	YBR165W	ADD66	P36040	267 aa		7.27	□□□□□ -1.25
UBS1	YBR165W	TOS1	P38288	455 aa		7.27	□□□□□ -1.25
UBS1	YBR165W	SPR28	Q04921	423 aa		7.27	□□□□□ -1.25
UBS1	YBR165W	EAR1	Q03212	550 aa		7.26	□□□□□ -1.25
UBS1	YBR165W	RMD1	Q03441	430 aa		7.26	□□□□□ -1.25
UBS1	YBR165W	LAP2	Q10740	671 aa		7.26	□□□□□ -1.25
UBS1	YBR165W	MAC1	P35192	417 aa		7.25	□□□□□ -1.25
UBS1	YBR165W	HSE1	P38753	452 aa		7.25	□□□□□ -1.25
UBS1	YBR165W	CTH1	P47976	325 aa		7.25	□□□□□ -1.25
UBS1	YBR165W	RCM1	P53972	490 aa		7.25	□□□□□ -1.25
UBS1	YBR165W	RET1	P22276	1149 aa	Known RBP	7.24	□□□□□ -1.25
UBS1	YBR165W	OYE3	P41816	400 aa	Predicted RBP	7.24	□□□□□ -1.25
UBS1	YBR165W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	7.24	□□□□□ -1.25	not detected
UBS1	YBR165W	EST2	Q06163	884 aa		7.24	□□□□□ -1.25
UBS1	YBR165W	ESF1	Q06344	628 aa	Known RBP	7.24	□□□□□ -1.25
UBS1	YBR165W	MAG2	Q06436	670 aa	Known RBP	7.24	□□□□□ -1.25
UBS1	YBR165W	ATG14	P38270	344 aa		7.23	□□□□□ -1.25
UBS1	YBR165W	ENT3	P47160	408 aa		7.23	□□□□□ -1.25
UBS1	YBR165W	RSA3	Q05942	220 aa	Known RBP	7.23	□□□□□ -1.25
UBS1	YBR165W	HDA2	Q06629	674 aa		7.23	□□□□□ -1.25
UBS1	YBR165W	BRE4	Q07660	1125 aa		7.23	□□□□□ -1.25
UBS1	YBR165W	YVC1	Q12324	675 aa		7.23	□□□□□ -1.25
UBS1	YBR165W	GCD1	P09032	578 aa	Predicted RBP	7.22	□□□□□ -1.25
UBS1	YBR165W	GNP1	P48813	663 aa		7.22	□□□□□ -1.25
UBS1	YBR165W	OYE2	Q03558	400 aa	Known RBP	7.22	□□□□□ -1.25
UBS1	YBR165W	PUS7	Q08647	676 aa	Known RBP	7.22	□□□□□ -1.25
UBS1	YBR165W	NSI1	Q12457	570 aa		7.22	□□□□□ -1.25
UBS1	YBR165W	VPS53	P47061	822 aa		7.21	□□□□□ -1.26
UBS1	YBR165W	SIW14	P53965	281 aa		7.21	□□□□□ -1.26
UBS1	YBR165W	YLR257W	Q06146	321 aa	Known RBP	7.21	□□□□□ -1.26
UBS1	YBR165W	AFG2	P32794	780 aa		7.2	□□□□□ -1.26
UBS1	YBR165W	QNS1	P38795	714 aa	Known RBP	7.2	□□□□□ -1.26
UBS1	YBR165W	HXT13	P39924	564 aa		7.2	□□□□□ -1.26
UBS1	YBR165W	HXT17	P53631	564 aa		7.2	□□□□□ -1.26
UBS1	YBR165W	YNR063W	P53749	607 aa		7.2	□□□□□ -1.26
UBS1	YBR165W	HXT15	P54854	567 aa		7.2	□□□□□ -1.26
UBS1	YBR165W	TPP1	Q03796	238 aa		7.2	□□□□□ -1.26
UBS1	YBR165W	GCR1	P07261	785 aa		7.19	□□□□□ -1.26
UBS1	YBR165W	LIP5	P32875	414 aa		7.19	□□□□□ -1.26
UBS1	YBR165W	PEX7	P39108	375 aa		7.19	□□□□□ -1.26
UBS1	YBR165W	HRK1	Q08732	759 aa	Known RBP	7.19	□□□□□ -1.26
UBS1	YBR165W	SDH1	Q00711	640 aa		7.18	□□□□□ -1.26
UBS1	YBR165W	TRE1	Q08919	783 aa		7.18	□□□□□ -1.26
UBS1	YBR165W	SEA4	P38164	1038 aa		7.17	□□□□□ -1.26
UBS1	YBR165W	ROD1	Q02805	837 aa		7.17	□□□□□ -1.26
UBS1	YBR165W	MRL1	Q06815	381 aa		7.17	□□□□□ -1.26
UBS1	YBR165W	PEP7	P32609	515 aa		7.16	□□□□□ -1.26
UBS1	YBR165W	DED1	P06634	604 aa	Known RBP	7.15	□□□□□ -1.26
UBS1	YBR165W	SAM35	P14693	329 aa		7.15	□□□□□ -1.26
UBS1	YBR165W	MKK2	P32491	506 aa		7.15	□□□□□ -1.26
UBS1	YBR165W	RTT10	Q08924	1013 aa		7.15	□□□□□ -1.26
UBS1	YBR165W	ALG3	P38179	458 aa		7.14	□□□□□ -1.27
UBS1	YBR165W	NMD3	P38861	518 aa	Known RBP	7.14	□□□□□ -1.27
UBS1	YBR165W	YJL045W	P47052	634 aa		7.14	□□□□□ -1.27
UBS1	YBR165W	ORC3	P54790	616 aa		7.14	□□□□□ -1.27
UBS1	YBR165W	PTC5	Q12511	572 aa		7.14	□□□□□ -1.27
UBS1	YBR165W	ADP1	P25371	1049 aa		7.13	□□□□□ -1.27
UBS1	YBR165W	RAT1	Q02792	1006 aa	Known RBP	7.13	□□□□□ -1.27
UBS1	YBR165W	KIP1	P28742	1111 aa		7.12	□□□□□ -1.27
UBS1	YBR165W	MNR2	P35724	969 aa		7.12	□□□□□ -1.27
UBS1	YBR165W	YHL012W	P38709	493 aa		7.12	□□□□□ -1.27
UBS1	YBR165W	SSY1	Q03770	852 aa		7.12	□□□□□ -1.27
UBS1	YBR165W	SRO9	P25567	434 aa	Known RBP	7.11	□□□□□ -1.27
UBS1	YBR165W	YSC84	P32793	468 aa		7.11	□□□□□ -1.27
UBS1	YBR165W	MDL2	P33311	773 aa		7.11	□□□□□ -1.27
UBS1	YBR165W	DUT1	P33317	147 aa		7.11	□□□□□ -1.27
UBS1	YBR165W	YPL260W	Q08977	551 aa		7.11	□□□□□ -1.27
UBS1	YBR165W	TMA46	Q12000	345 aa	Known RBP	7.11	□□□□□ -1.27
UBS1	YBR165W	SYP1	P25623	870 aa	Known RBP	7.1	□□□□□ -1.27
UBS1	YBR165W	PRO1	P32264	428 aa		7.1	□□□□□ -1.27
UBS1	YBR165W	PET112	P33893	541 aa		7.1	□□□□□ -1.27
UBS1	YBR165W	RGD1	P38339	666 aa		7.1	□□□□□ -1.27
UBS1	YBR165W	SVF1	Q05515	481 aa		7.1	□□□□□ -1.27
UBS1	YBR165W	LPX1	Q12405	387 aa	Known RBP	7.1	□□□□□ -1.27
UBS1	YBR165W	CDC34	P14682	295 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	RAD27	P26793	382 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	HSP78	P33416	811 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	RER2	P35196	286 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	BAP2	P38084	609 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	PTC7	P38797	343 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	RPN3	P40016	523 aa	Known RBP	7.09	□□□□□ -1.27
UBS1	YBR165W	CNN1	P43618	361 aa		7.09	□□□□□ -1.27
UBS1	YBR165W	DBP5	P20449	482 aa	Known RBP	7.08	□□□□□ -1.28
UBS1	YBR165W	MET10	P39692	1035 aa		7.08	□□□□□ -1.28
UBS1	YBR165W	HOS3	Q02959	697 aa	Known RBP	7.07	□□□□□ -1.28
UBS1	YBR165W	DFG16	Q99234	619 aa		7.07	□□□□□ -1.28
UBS1	YBR165W	LRG1	P35688	1017 aa		7.06	□□□□□ -1.28
UBS1	YBR165W	GPB2	P39717	880 aa		7.06	□□□□□ -1.28
UBS1	YBR165W	MPH1	P40562	993 aa		7.06	□□□□□ -1.28
UBS1	YBR165W	GTS1	P40956	396 aa		7.06	□□□□□ -1.28
UBS1	YBR165W	ECL1	P48235	211 aa		7.06	□□□□□ -1.28
UBS1	YBR165W	SPO21	Q12411	609 aa		7.06	□□□□□ -1.28
UBS1	YBR165W	NAP1	P25293	417 aa	Known RBP	7.05	□□□□□ -1.28
UBS1	YBR165W	SNU71	P53207	620 aa	Known RBP	7.05	□□□□□ -1.28

Retrieved 100 of 5,963 RNA–protein pairs in 45.5 ms