RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 HS3ST3A1Q9Y663 406 aa12.44□□□□□ -0.42
USP40-205ENST00000430158 A0A1B0GTW7 788 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 PRAMEF26H0Y7S4 382 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 PSMD11O00231 422 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 NEMP1O14524 444 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 AURKAO14965 403 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 BCAT2O15382 392 aaPredicted RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 LRP3O75074 770 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 TM7SF2O76062 418 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 RECQL5O94762 991 aaPredicted RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 CLDN7O95471 211 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 KRT14P02533 472 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 FGF1P05230 155 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 C1SP09871 688 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 ZNF806P0C7X5 589 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 PIRTP0C851 137 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 HLA-DPA1P20036 260 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 IVDP26440 423 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 DPP6P42658 865 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 RACK1P63244 317 aaKnown RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 LMNB2Q03252 620 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 PRPSAP1Q14558 356 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 LRRC66Q68CR7 880 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 SLC23A3Q6PIS1 610 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 C4orf22Q6V702 233 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 KDM7AQ6ZMT4 941 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 RAVER1Q8IY67 606 aaKnown RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 ZCCHC9Q8N567 271 aaKnown RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 TAB3Q8N5C8 712 aaPredicted RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 CCDC89Q8N998 374 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 DENND6BQ8NEG7 585 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 CXorf40AQ8TE69 158 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 RUBCNQ92622 972 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 FUBP1Q96AE4 644 aaKnown RBP12.43□□□□□ -0.42
USP40-205ENST00000430158 SERAC1Q96JX3 654 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 PPP1R2P1Q96PQ5 205 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 APOL2Q9BQE5 337 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 FZD3Q9NPG1 666 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 CDC23Q9UJX2 597 aa12.43□□□□□ -0.42
USP40-205ENST00000430158 GOLGA6L10A0A0M3HER8 536 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 TCRBV7S3A2A0A539 114 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 POM121BA6NF01 834 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 ERI2A8K979 691 aaKnown RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 H0Y8X5 98 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 CCDC188H7C350 402 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 KIF2AO00139 706 aaPredicted RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 TK2O00142 265 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 VILLO15195 856 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 PSMD3O43242 534 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 USP12O75317 370 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 ELFN1P0C7U0 828 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 ZNF30P17039 623 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 HNRNPA2B1P22626 353 aaKnown RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 PSMA3P25788 255 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 IGFALSP35858 605 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 GRIA1P42261 906 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 CSNK1EP49674 416 aaKnown RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 EPHB1P54762 984 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 CLDN2P57739 230 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 IRX4P78413 519 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 SGCGQ13326 291 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 KCNJ11Q14654 390 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 TRIP13Q15645 432 aaPredicted RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 CCDC6Q16204 474 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 DUOXA1Q1HG43 343 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 TPRG1LQ5T0D9 272 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 DMRTA1Q5VZB9 504 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 TCEAL6Q6IPX3 200 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 Q6ZVL8 140 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 LYSMD3Q7Z3D4 306 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 NLRP8Q86W28 1048 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 RGL4Q8IZJ4 473 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 NDUFAF2Q8N183 169 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 SLC25A41Q8N5S1 370 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 MFSD2AQ8NA29 543 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 SPATA4Q8NEY3 305 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 SNX19Q92543 992 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 TCEAL3Q969E4 200 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 RMDN1Q96DB5 314 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 DTD2Q96FN9 168 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 IFT43Q96FT9 208 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 TBL1YQ9BQ87 522 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 MIR1-1HGQ9H1L0 117 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 LRRC40Q9H9A6 602 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 EIF2B3Q9NR50 452 aaKnown RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 RAB6BQ9NRW1 208 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 GMEB2Q9UKD1 530 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 ZNF711Q9Y462 761 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 DMXL1Q9Y485 3027 aa12.42□□□□□ -0.42
USP40-205ENST00000430158 ZNF106Q9H2Y7 1883 aaKnown RBP12.42□□□□□ -0.42
USP40-205ENST00000430158 CFAP54Q96N23 3096 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 DNAH14Q0VDD8 3507 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 LRP4O75096 1905 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 PLXNB3Q9ULL4 1909 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 ARHGEF17Q96PE2 2063 aaPredicted RBP12.41□□□□□ -0.42
USP40-205ENST00000430158 TP73O15350 636 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 SOD1P00441 154 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 NFKBIAP25963 317 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 TRIM23P36406 574 aa12.41□□□□□ -0.42
USP40-205ENST00000430158 ETV3P41162 512 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms