RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 MTRRQ9UBK8 725 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 TCAF2A6NFQ2 919 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CBX4O00257 560 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 STC2O76061 302 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 RAG1P15918 1043 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 IMPDH1P20839 514 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 ALDH7A1P49419 539 aaKnown RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CDH13P55290 713 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 DSG1Q02413 1049 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CDC16Q13042 620 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF678Q5SXM1 525 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 LPCAT4Q643R3 524 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 BNC2Q6ZN30 1099 aaPredicted RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 DEFB128Q7Z7B8 93 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 PELI3Q8N2H9 469 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 SNX31Q8N9S9 440 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 GPR150Q8NGU9 434 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 CDK5RAP1Q96SZ6 601 aaKnown RBP14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 ECSITQ9BQ95 431 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 MEAF6Q9HAF1 191 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 STK39Q9UEW8 545 aa14.87□□□□□ -0.03
CLCNKA-201ENST00000331433 UBA6A0AVT1 1052 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 CCDC189A1A4V9 331 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 H3BMM5 538 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 SNUPNO95149 360 aaKnown RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 RHOCP08134 193 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF37AP17032 561 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 HMGA1P17096 107 aaKnown RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ADSLP30566 484 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 STC1P52823 247 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 BTG3Q14201 252 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 HERC3Q15034 1050 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 OR4D1Q15615 310 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 DEFB115Q30KQ5 88 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 USP41Q3LFD5 358 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 IRGCQ6NXR0 463 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ADGRG6Q86SQ4 1221 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 OR4K2Q8NGD2 314 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 PEX13Q92968 403 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ZBED2Q9BTP6 218 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 RNF38Q9H0F5 515 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 WDR41Q9HAD4 459 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 PRPF19Q9UMS4 504 aaKnown RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 C2orf78A6NCI8 922 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 LRRC14BA6NHZ5 514 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 UBXN8O00124 270 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 PITPNM1O00562 1244 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 INSIG1O15503 277 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 KDELR3O43731 214 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 SIX3O95343 332 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 PRLP01236 227 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 XRCC1P18887 633 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 SLC26A3P40879 764 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 TUFMP49411 452 aaKnown RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF140P52738 457 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 SATB1Q01826 763 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 MTA1Q13330 715 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ART3Q13508 389 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 LAMB3Q13751 1172 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 CEACAM7Q14002 265 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 PTPRRQ15256 657 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 UNC50Q53HI1 259 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 KIAA1841Q6NSI8 718 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 GLT6D1Q7Z4J2 308 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 SDCCAG8Q86SQ7 713 aaPredicted RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 KBTBD6Q86V97 674 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 SLAIN1Q8ND83 568 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 MDGA1Q8NFP4 955 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 HMGCLL1Q8TB92 370 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 TMA16Q96EY4 203 aaKnown RBP14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 FAR2Q96K12 515 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 CYP2S1Q96SQ9 504 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 TRAF6Q9Y4K3 522 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 PCDHGC4Q9Y5F7 938 aa14.86□□□□□ -0.03
CLCNKA-201ENST00000331433 ATP6AP2A0A1C7CYW4 349 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 H3BNX3 289 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PPP6CO00743 305 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CLDN11O75508 207 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ATP6AP2O75787 350 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PEX2P28328 305 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CDKN1CP49918 316 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ATXN3P54252 364 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 MRPS35P82673 323 aaKnown RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PDAP1Q13442 181 aaKnown RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 ZNF423Q2M1K9 1284 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PIGGQ5H8A4 983 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 TMEM154Q6P9G4 183 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 LINGO4Q6UY18 593 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CYHR1Q6ZMK1 362 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PGAM4Q8N0Y7 254 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 AFAP1L2Q8N4X5 818 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PTGR2Q8N8N7 351 aaPredicted RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 LPCAT1Q8NF37 534 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 SERPINI1Q99574 410 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 CLSTN3Q9BQT9 956 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 AARSD1Q9BTE6 412 aaKnown RBP14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 PPP1R12CQ9BZL4 782 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 EFCAB1Q9HAE3 211 aa14.85□□□□□ -0.03
CLCNKA-201ENST00000331433 TRPC7Q9HCX4 862 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms