RNA–Protein interactions for RNA: YPL016W

SWI1, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SWI1, Length 3,945 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI1	YPL016W	SRL3	P36167	246 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	FYV8	P46949	817 aa	Known RBP	4.18	□□□□□ -1.74
SWI1	YPL016W	CTH1	P47976	325 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	DSF1	P0CX08	502 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	YNR073C	P0CX09	502 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	BRF1	P29056	596 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	SLA2	P33338	968 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	PSY4	P38193	441 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	GLO3	P38682	493 aa	Known RBP	4.18	□□□□□ -1.74
SWI1	YPL016W	GCD14	P46959	383 aa	Predicted RBP	4.18	□□□□□ -1.74
SWI1	YPL016W	RIA1	P53893	1110 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	HEH2	Q03281	663 aa		4.18	□□□□□ -1.74
SWI1	YPL016W	LCB5	Q06147	687 aa	Known RBP	4.18	□□□□□ -1.74
SWI1	YPL016W	SES1	P07284	462 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	PRP22	P24384	1145 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	CDC48	P25694	835 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	ZUO1	P32527	433 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	RPS0A	P32905	252 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	ECM4	P36156	370 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	YVC1	Q12324	675 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	APC2	Q12440	853 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	MRF1	P30775	413 aa	Predicted RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	PUF6	Q04373	656 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	MDM38	Q08179	573 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	OSW1	Q08692	278 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	SLH1	P53327	1967 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
SWI1	YPL016W	RPA135	P22138	1203 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	SIS1	P25294	352 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	PTP3	P40048	928 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	HST1	P53685	503 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	RSM28	Q03430	361 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	SMD2	Q06217	110 aa	Known RBP	4.17	□□□□□ -1.74
SWI1	YPL016W	TUS1	Q06412	1307 aa		4.17	□□□□□ -1.74
SWI1	YPL016W	HIS3	P06633	220 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	KAR3	P17119	729 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	KCC4	P25389	1037 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	MRE11	P32829	692 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	OSH3	P38713	996 aa	Known RBP	4.16	□□□□□ -1.74
SWI1	YPL016W	TOM71	P38825	639 aa	Known RBP	4.16	□□□□□ -1.74
SWI1	YPL016W	ATG32	P40458	529 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	BET4	Q00618	327 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	INP2	Q03824	705 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	KDX1	P36005	433 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	MIC60	P36112	540 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	VPS30	Q02948	557 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	PPM1	Q04081	328 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	SRP40	P32583	406 aa	Predicted RBP	4.16	□□□□□ -1.74
SWI1	YPL016W	CSE4	P36012	229 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	YLF2	P38746	405 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	MRX12	P47084	519 aa		4.16	□□□□□ -1.74
SWI1	YPL016W	DNL4	Q08387	944 aa	Predicted RBP	4.16	□□□□□ -1.74
SWI1	YPL016W	PMR1	P13586	950 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	RIM21	P48565	533 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	DSD1	P53095	428 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	DCS1	Q06151	350 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	EST1	P17214	699 aa	Predicted RBP	4.15	□□□□□ -1.74
SWI1	YPL016W	SWC3	P31376	625 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	YEL1	P34225	687 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	STN1	P38960	494 aa		4.15	□□□□□ -1.74
SWI1	YPL016W	THR1	P17423	357 aa	Known RBP	4.15	□□□□□ -1.75
SWI1	YPL016W	PRR1	P28708	518 aa		4.15	□□□□□ -1.75
SWI1	YPL016W	NPR3	P38742	1146 aa		4.15	□□□□□ -1.75
SWI1	YPL016W	DAN4	P47179	1161 aa		4.15	□□□□□ -1.75
SWI1	YPL016W	PCL10	P53124	433 aa		4.15	□□□□□ -1.75
SWI1	YPL016W	YGR122W	P53272	402 aa		4.15	□□□□□ -1.75
SWI1	YPL016W	GDA1	P32621	518 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	NTH2	P35172	780 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	OAF1	P39720	1047 aa	Predicted RBP	4.14	□□□□□ -1.75
SWI1	YPL016W	RSM25	P40496	264 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	RAD17	P48581	401 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	MSN5	P52918	1224 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	SPO19	Q03029	223 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	TY4B-P	A0A0B7P3V8	1104 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	TFC4	P33339	1025 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	SPP381	P38282	291 aa	Predicted RBP	4.14	□□□□□ -1.75
SWI1	YPL016W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
SWI1	YPL016W	ADE12	P80210	433 aa	Known RBP	4.14	□□□□□ -1.75
SWI1	YPL016W	GCR2	Q01722	534 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	COA4	Q05809	96 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	PSK2	Q08217	1101 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	NKP1	Q12493	238 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	ARG8	P18544	423 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	HXT1	P32465	570 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	YKR018C	P36114	725 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	CEF1	Q03654	590 aa	Predicted RBP	4.14	□□□□□ -1.75
SWI1	YPL016W	KAR5	Q04746	504 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	YDL073W	Q07454	984 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	BUD14	P27637	709 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	OCT1	P35999	772 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	NUP60	P39705	539 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	STB1	P42845	420 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	JJJ1	P53863	590 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	VTC3	Q02725	835 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	NKP2	Q06162	153 aa		4.14	□□□□□ -1.75
SWI1	YPL016W	KGD2	P19262	463 aa	Predicted RBP	4.13	□□□□□ -1.75
SWI1	YPL016W	PIH1	P38768	344 aa		4.13	□□□□□ -1.75
SWI1	YPL016W	VPS53	P47061	822 aa		4.13	□□□□□ -1.75
SWI1	YPL016W	WAR1	Q03631	944 aa		4.13	□□□□□ -1.75
SWI1	YPL016W	RCF1	Q03713	159 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms