RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C CST9Q06032 482 aa6.16□□□□□ -1.42
VPS1YKR001C CLP1Q08685 445 aaPredicted RBP6.16□□□□□ -1.42
VPS1YKR001C YPR204WQ08995 1032 aa6.16□□□□□ -1.42
VPS1YKR001C CSR2Q12734 1121 aa6.16□□□□□ -1.42
VPS1YKR001C CYB2P00175 591 aa6.15□□□□□ -1.42
VPS1YKR001C HPR1P17629 752 aaKnown RBP6.15□□□□□ -1.42
VPS1YKR001C PUP2P32379 260 aa6.15□□□□□ -1.42
VPS1YKR001C RPC37P36121 282 aa6.15□□□□□ -1.42
VPS1YKR001C EFM2P38347 419 aa6.15□□□□□ -1.42
VPS1YKR001C BEM4P39011 633 aa6.15□□□□□ -1.42
VPS1YKR001C OCA1P50946 238 aaPredicted RBP6.15□□□□□ -1.42
VPS1YKR001C CRF1Q04930 467 aa6.15□□□□□ -1.42
VPS1YKR001C NSE3Q05541 303 aa6.15□□□□□ -1.42
VPS1YKR001C LYS2P07702 1392 aa6.15□□□□□ -1.43
VPS1YKR001C APL2P36000 726 aaPredicted RBP6.14□□□□□ -1.43
VPS1YKR001C MET1P36150 593 aa6.14□□□□□ -1.43
VPS1YKR001C STV1P37296 890 aa6.14□□□□□ -1.43
VPS1YKR001C SET4P42948 560 aa6.14□□□□□ -1.43
VPS1YKR001C PXR1P53335 271 aaPredicted RBP6.14□□□□□ -1.43
VPS1YKR001C ZUO1P32527 433 aaKnown RBP6.14□□□□□ -1.43
VPS1YKR001C PPX1P38698 397 aa6.14□□□□□ -1.43
VPS1YKR001C ITC1P53125 1264 aa6.14□□□□□ -1.43
VPS1YKR001C YML119WQ03208 357 aa6.14□□□□□ -1.43
VPS1YKR001C PHM6Q05637 104 aa6.14□□□□□ -1.43
VPS1YKR001C TRS33Q99394 268 aa6.14□□□□□ -1.43
VPS1YKR001C MAK16P10962 306 aaPredicted RBP6.13□□□□□ -1.43
VPS1YKR001C TRK1P12685 1235 aa6.13□□□□□ -1.43
VPS1YKR001C SPT5P27692 1063 aaKnown RBP6.13□□□□□ -1.43
VPS1YKR001C EFB1P32471 206 aaKnown RBP6.13□□□□□ -1.43
VPS1YKR001C AFG2P32794 780 aa6.13□□□□□ -1.43
VPS1YKR001C RRT6P53117 311 aaPredicted RBP6.13□□□□□ -1.43
VPS1YKR001C DNM1P54861 757 aa6.13□□□□□ -1.43
VPS1YKR001C RRG1Q12167 365 aaPredicted RBP6.13□□□□□ -1.43
VPS1YKR001C BRR1Q99177 341 aaPredicted RBP6.13□□□□□ -1.43
VPS1YKR001C MOT2P34909 587 aaKnown RBP6.13□□□□□ -1.43
VPS1YKR001C PCS60P38137 543 aaKnown RBP RIP-Chip data6.13□□□□□ -1.43not detected
VPS1YKR001C RSC30P38781 883 aa6.13□□□□□ -1.43
VPS1YKR001C UBP12P39538 1254 aa6.13□□□□□ -1.43
VPS1YKR001C HEH2Q03281 663 aa6.13□□□□□ -1.43
VPS1YKR001C YDR338CQ05497 695 aa6.13□□□□□ -1.43
VPS1YKR001C MRD1Q06106 887 aaKnown RBP6.13□□□□□ -1.43
VPS1YKR001C BTN2P53286 410 aa6.12□□□□□ -1.43
VPS1YKR001C MDM38Q08179 573 aa6.12□□□□□ -1.43
VPS1YKR001C RKM4Q12504 494 aa6.12□□□□□ -1.43
VPS1YKR001C APE3P37302 537 aaKnown RBP6.11□□□□□ -1.43
VPS1YKR001C YNL050CP53952 270 aa6.11□□□□□ -1.43
VPS1YKR001C UBX2Q04228 584 aa6.11□□□□□ -1.43
VPS1YKR001C SMD2Q06217 110 aaKnown RBP6.11□□□□□ -1.43
VPS1YKR001C GAS5Q08193 484 aa6.11□□□□□ -1.43
VPS1YKR001C YOL057WQ08225 711 aa6.11□□□□□ -1.43
VPS1YKR001C TFB4Q12004 338 aa6.11□□□□□ -1.43
VPS1YKR001C DBP10Q12389 995 aaKnown RBP6.11□□□□□ -1.43
VPS1YKR001C HMG1P12683 1054 aa6.11□□□□□ -1.43
VPS1YKR001C PRS1P32895 427 aaKnown RBP6.11□□□□□ -1.43
VPS1YKR001C PNT1P38969 423 aa6.11□□□□□ -1.43
VPS1YKR001C MAM1P40065 302 aa6.11□□□□□ -1.43
VPS1YKR001C DSL1P53847 754 aa6.11□□□□□ -1.43
VPS1YKR001C SPO71Q03868 1245 aa6.11□□□□□ -1.43
VPS1YKR001C VPS64Q03944 604 aa6.11□□□□□ -1.43
VPS1YKR001C HMI1Q12039 706 aa6.11□□□□□ -1.43
VPS1YKR001C RRN6P32786 894 aa6.1□□□□□ -1.43
VPS1YKR001C EXO84P38261 753 aa6.1□□□□□ -1.43
VPS1YKR001C YLF2P38746 405 aa6.1□□□□□ -1.43
VPS1YKR001C SDS3P40505 327 aa6.1□□□□□ -1.43
VPS1YKR001C IAH1P41734 238 aa6.1□□□□□ -1.43
VPS1YKR001C APL6P46682 809 aa6.1□□□□□ -1.43
VPS1YKR001C VTI1Q04338 217 aa6.1□□□□□ -1.43
VPS1YKR001C BUD14P27637 709 aa6.1□□□□□ -1.43
VPS1YKR001C KRE2P27809 442 aa6.1□□□□□ -1.43
VPS1YKR001C SIT1P39980 628 aa6.1□□□□□ -1.43
VPS1YKR001C RSC1P53236 928 aa6.1□□□□□ -1.43
VPS1YKR001C SLP1Q12232 587 aa6.1□□□□□ -1.43
VPS1YKR001C TRP5P00931 707 aaKnown RBP6.09□□□□□ -1.43
VPS1YKR001C TSR4P25040 408 aa6.09□□□□□ -1.43
VPS1YKR001C NIP100P33420 868 aa6.09□□□□□ -1.43
VPS1YKR001C COY1P34237 679 aa6.09□□□□□ -1.43
VPS1YKR001C RAD17P48581 401 aa6.09□□□□□ -1.43
VPS1YKR001C SEN54Q02825 467 aaPredicted RBP6.09□□□□□ -1.43
VPS1YKR001C YLR271WQ06152 274 aa6.09□□□□□ -1.43
VPS1YKR001C PMT7Q06644 662 aa6.09□□□□□ -1.43
VPS1YKR001C WHI5Q12416 295 aa6.09□□□□□ -1.43
VPS1YKR001C DPH6Q12429 685 aa6.09□□□□□ -1.43
VPS1YKR001C NKP1Q12493 238 aa6.09□□□□□ -1.43
VPS1YKR001C CBP1P07252 654 aa6.08□□□□□ -1.44
VPS1YKR001C FAR1P21268 830 aa6.08□□□□□ -1.44
VPS1YKR001C PHO84P25297 587 aaKnown RBP6.08□□□□□ -1.44
VPS1YKR001C ATG19P35193 415 aa6.08□□□□□ -1.44
VPS1YKR001C ARB1P40024 610 aaKnown RBP6.08□□□□□ -1.44
VPS1YKR001C MSH6Q03834 1242 aa6.08□□□□□ -1.44
VPS1YKR001C FLO11P08640 1367 aa6.08□□□□□ -1.44
VPS1YKR001C KAR1P11927 433 aa6.08□□□□□ -1.44
VPS1YKR001C PEP12P32854 288 aa6.08□□□□□ -1.44
VPS1YKR001C RIM101P33400 625 aa6.08□□□□□ -1.44
VPS1YKR001C YMR1P47147 688 aaKnown RBP RIP-Chip data6.08□□□□□ -1.44not detected
VPS1YKR001C ZDS2P54786 942 aa6.08□□□□□ -1.44
VPS1YKR001C PNG1Q02890 363 aa6.08□□□□□ -1.44
VPS1YKR001C PUF6Q04373 656 aaKnown RBP6.08□□□□□ -1.44
VPS1YKR001C RBA50Q04418 439 aa6.08□□□□□ -1.44
VPS1YKR001C MAM3Q12296 706 aa6.08□□□□□ -1.44
VPS1YKR001C RAD3P06839 778 aa6.07□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms