RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	COG8	Q04632	607 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	CDC31	P06704	161 aa	Known RBP	3.9	□□□□□ -1.79
PEX1	YKL197C	TPM1	P17536	199 aa	Known RBP	3.9	□□□□□ -1.79
PEX1	YKL197C	POL4	P25615	582 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	PPH3	P32345	308 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	ESF2	P53743	316 aa	Known RBP	3.9	□□□□□ -1.79
PEX1	YKL197C	JJJ1	P53863	590 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	MDM1	Q01846	1127 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	YML119W	Q03208	357 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	IRC3	Q06683	689 aa		3.9	□□□□□ -1.79
PEX1	YKL197C	TIF1	P10081	395 aa	Known RBP	3.89	□□□□□ -1.79
PEX1	YKL197C	ISF1	P32488	338 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	KDX1	P36005	433 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	YBL086C	P38177	466 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	UBP13	P38187	747 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	MED8	P38304	223 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	EFM2	P38347	419 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	ARB1	P40024	610 aa	Known RBP	3.89	□□□□□ -1.79
PEX1	YKL197C	ITC1	P53125	1264 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	DSL1	P53847	754 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	YNL108C	P53929	270 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	NDL1	Q06568	189 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	ARR1	Q06596	294 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	LSP1	Q12230	341 aa	Known RBP	3.89	□□□□□ -1.79
PEX1	YKL197C	SLP1	Q12232	587 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	MCM16	Q12262	181 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	TRS33	Q99394	268 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	TRK1	P12685	1235 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	AFT1	P22149	690 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	BRF1	P29056	596 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	TTI1	P36097	1038 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	CWH41	P53008	833 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	RIA1	P53893	1110 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	PHM6	Q05637	104 aa		3.89	□□□□□ -1.79
PEX1	YKL197C	NOP14	Q99207	810 aa	Known RBP	3.89	□□□□□ -1.79
PEX1	YKL197C	PEP12	P32854	288 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	YBL036C	P38197	257 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	HAL5	P38970	855 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	SRP1	Q02821	542 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	ATG26	Q06321	1198 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	CYB2	P00175	591 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	YEF3	P16521	1044 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	TEC1	P18412	486 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	RTG2	P32608	588 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	ECM1	P39715	212 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	YJL007C	P47080	104 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	VPS20	Q04272	221 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	NKP1	Q12493	238 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	SEC7	P11075	2009 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	MSM1	P22438	575 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	YLF2	P38746	405 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	IES1	P43579	692 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	EAF7	P53911	425 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	APP1	P53933	587 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	HEH2	Q03281	663 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	SUB2	Q07478	446 aa	Known RBP	3.88	□□□□□ -1.79
PEX1	YKL197C	RKM4	Q12504	494 aa		3.88	□□□□□ -1.79
PEX1	YKL197C	GEA1	P47102	1408 aa	Predicted RBP	3.87	□□□□□ -1.79
PEX1	YKL197C	IXR1	P33417	597 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	RTT105	P40063	208 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	EMP47	P43555	445 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	SEN54	Q02825	467 aa	Predicted RBP	3.87	□□□□□ -1.79
PEX1	YKL197C	VTI1	Q04338	217 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	ENT2	Q05785	613 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	ORM2	Q06144	216 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	PUS1	Q12211	544 aa	Known RBP	3.87	□□□□□ -1.79
PEX1	YKL197C	DNF3	Q12674	1656 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	MMS1	Q06211	1407 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	PSO2	P30620	661 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	CIC1	P38779	376 aa	Known RBP	3.87	□□□□□ -1.79
PEX1	YKL197C	MSB3	P48566	633 aa	Predicted RBP	3.87	□□□□□ -1.79
PEX1	YKL197C	RSC1	P53236	928 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	PMT7	Q06644	662 aa		3.87	□□□□□ -1.79
PEX1	YKL197C	CLP1	Q08685	445 aa	Predicted RBP	3.87	□□□□□ -1.79
PEX1	YKL197C	ASH1	P34233	588 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	VPS41	P38959	992 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	RIC1	P40395	1056 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	YDR338C	Q05497	695 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	NSE3	Q05541	303 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	BRR1	Q99177	341 aa	Predicted RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	TAF5	P38129	798 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	CCM1	P48237	864 aa	Predicted RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	YNL247W	P53852	767 aa	Known RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	PUF6	Q04373	656 aa	Known RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	ARV1	Q06541	321 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	YDL073W	Q07454	984 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	PCL8	Q08966	492 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	LSO1	Q3E827	93 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	SRP54	P20424	541 aa	Known RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	TSR4	P25040	408 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	ELM1	P32801	640 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	NIP100	P33420	868 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	NUF2	P33895	451 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	FUI1	P38196	639 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	GLO3	P38682	493 aa	Known RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	SEC26	P41810	973 aa	Known RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	GCD10	P41814	478 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	BTN2	P53286	410 aa		3.86	□□□□□ -1.79
PEX1	YKL197C	MRD1	Q06106	887 aa	Known RBP	3.86	□□□□□ -1.79
PEX1	YKL197C	SAC3	P46674	1301 aa		3.86	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 53.5 ms