RNA–Protein interactions for RNA: YKL018W

SWD2, Transcript of Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex, yeast

Gene SWD2, Length 990 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWD2	YKL018W	DUR3	P33413	735 aa		5.81	□□□□□ -1.48
SWD2	YKL018W	UTP22	P53254	1237 aa	Predicted RBP	5.81	□□□□□ -1.48
SWD2	YKL018W	YIG1	Q08956	461 aa		5.81	□□□□□ -1.48
SWD2	YKL018W	LIP5	P32875	414 aa		5.8	□□□□□ -1.48
SWD2	YKL018W	SHU2	P38957	223 aa		5.8	□□□□□ -1.48
SWD2	YKL018W	YAF9	P53930	226 aa		5.8	□□□□□ -1.48
SWD2	YKL018W	DOT1	Q04089	582 aa	Known RBP	5.8	□□□□□ -1.48
SWD2	YKL018W	YCS4	Q06156	1176 aa		5.8	□□□□□ -1.48
SWD2	YKL018W	TRP3	P00937	484 aa		5.79	□□□□□ -1.48
SWD2	YKL018W	YKL077W	P36081	392 aa		5.79	□□□□□ -1.48
SWD2	YKL018W	REI1	P38344	393 aa	Predicted RBP	5.79	□□□□□ -1.48
SWD2	YKL018W	MSC6	Q08818	692 aa	Known RBP	5.79	□□□□□ -1.48
SWD2	YKL018W	CYC7	P00045	113 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	MSB1	P21339	1137 aa	Known RBP	5.78	□□□□□ -1.48
SWD2	YKL018W	PRP5	P21372	849 aa	Predicted RBP	5.78	□□□□□ -1.48
SWD2	YKL018W	SEC20	P28791	383 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	ELM1	P32801	640 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	SLD2	P34252	453 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	GPT2	P36148	743 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	TOS1	P38288	455 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	MEC3	Q02574	474 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	OXR1	Q08952	273 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	NSI1	Q12457	570 aa		5.78	□□□□□ -1.48
SWD2	YKL018W	PPX1	P38698	397 aa		5.77	□□□□□ -1.49
SWD2	YKL018W	SAP155	P43612	1002 aa		5.77	□□□□□ -1.49
SWD2	YKL018W	SPO74	P45819	413 aa		5.77	□□□□□ -1.49
SWD2	YKL018W	AVO1	Q08236	1176 aa		5.77	□□□□□ -1.49
SWD2	YKL018W	ALG6	Q12001	544 aa	Known RBP	5.77	□□□□□ -1.49
SWD2	YKL018W	KAR2	P16474	682 aa	Known RBP	5.76	□□□□□ -1.49
SWD2	YKL018W	VPS35	P34110	944 aa		5.76	□□□□□ -1.49
SWD2	YKL018W	YKR073C	P36153	106 aa		5.76	□□□□□ -1.49
SWD2	YKL018W	ATG14	P38270	344 aa		5.76	□□□□□ -1.49
SWD2	YKL018W	MMM1	P41800	426 aa		5.76	□□□□□ -1.49
SWD2	YKL018W	SQT1	P35184	431 aa		5.74	□□□□□ -1.49
SWD2	YKL018W	RSM26	P47141	266 aa		5.74	□□□□□ -1.49
SWD2	YKL018W	DAL4	Q04895	635 aa		5.74	□□□□□ -1.49
SWD2	YKL018W	PHO4	P07270	312 aa	Known RBP	5.73	□□□□□ -1.49
SWD2	YKL018W	IPL1	P38991	367 aa		5.73	□□□□□ -1.49
SWD2	YKL018W	CIT3	P43635	486 aa		5.73	□□□□□ -1.49
SWD2	YKL018W	PEX13	P80667	386 aa		5.73	□□□□□ -1.49
SWD2	YKL018W	MET4	P32389	672 aa		5.72	□□□□□ -1.49
SWD2	YKL018W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	5.72	□□□□□ -1.49	RIP-Chip
SWD2	YKL018W	PRP40	P33203	583 aa	Known RBP	5.72	□□□□□ -1.49
SWD2	YKL018W	WHI3	P34761	661 aa	Known RBP	5.72	□□□□□ -1.49
SWD2	YKL018W	ARL1	P38116	183 aa	Known RBP	5.72	□□□□□ -1.49
SWD2	YKL018W	DAK2	P43550	591 aa		5.72	□□□□□ -1.49
SWD2	YKL018W	MTR4	P47047	1073 aa	Known RBP	5.72	□□□□□ -1.49
SWD2	YKL018W	ELA1	P53861	379 aa	Predicted RBP	5.72	□□□□□ -1.49
SWD2	YKL018W	BRE4	Q07660	1125 aa		5.72	□□□□□ -1.49
SWD2	YKL018W	YOR059C	Q08448	450 aa	Known RBP	5.72	□□□□□ -1.49
SWD2	YKL018W	RPS4A	P0CX35	261 aa	Known RBP	5.71	□□□□□ -1.5
SWD2	YKL018W	RPS4B	P0CX36	261 aa	Known RBP	5.71	□□□□□ -1.5
SWD2	YKL018W	RCM1	P53972	490 aa		5.71	□□□□□ -1.5
SWD2	YKL018W	WHI5	Q12416	295 aa		5.71	□□□□□ -1.5
SWD2	YKL018W	TY1A-LR4	P0C2I8	440 aa	Known RBP	5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-DR6	P0CX70	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-ER1	P0CX71	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-LR2	P0CX72	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-PL	P0CX73	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-JR1	P0CX74	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-LR3	P0CX75	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-ML2	P0CX76	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	RPT1	P33299	467 aa	Known RBP	5.7	□□□□□ -1.5
SWD2	YKL018W	MSH4	P40965	878 aa	Predicted RBP	5.7	□□□□□ -1.5
SWD2	YKL018W	YGR045C	P53229	120 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-GR1	Q12085	440 aa		5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	5.7	□□□□□ -1.5
SWD2	YKL018W	TY1A-OL	Q92392	440 aa	Known RBP	5.7	□□□□□ -1.5
SWD2	YKL018W	MSH3	P25336	1018 aa		5.69	□□□□□ -1.5
SWD2	YKL018W	NFS1	P25374	497 aa		5.69	□□□□□ -1.5
SWD2	YKL018W	SLS1	P42900	643 aa		5.69	□□□□□ -1.5
SWD2	YKL018W	ULP1	Q02724	621 aa		5.69	□□□□□ -1.5
SWD2	YKL018W	NNK1	P36003	928 aa		5.68	□□□□□ -1.5
SWD2	YKL018W	EXO5	P38289	585 aa		5.68	□□□□□ -1.5
SWD2	YKL018W	SDH1	Q00711	640 aa		5.68	□□□□□ -1.5
SWD2	YKL018W	NOG1	Q02892	647 aa	Known RBP	5.68	□□□□□ -1.5
SWD2	YKL018W	LAP2	Q10740	671 aa		5.68	□□□□□ -1.5
SWD2	YKL018W	UGA4	P32837	571 aa		5.67	□□□□□ -1.5
SWD2	YKL018W	SMY2	P32909	740 aa	Known RBP	5.67	□□□□□ -1.5
SWD2	YKL018W	HSE1	P38753	452 aa		5.67	□□□□□ -1.5
SWD2	YKL018W	YAR028W	P39548	234 aa		5.67	□□□□□ -1.5
SWD2	YKL018W	MAG2	Q06436	670 aa	Known RBP	5.67	□□□□□ -1.5
SWD2	YKL018W	MGE1	P38523	228 aa		5.66	□□□□□ -1.5
SWD2	YKL018W	YNR063W	P53749	607 aa		5.66	□□□□□ -1.5
SWD2	YKL018W	GIS1	Q03833	894 aa		5.66	□□□□□ -1.5
SWD2	YKL018W	GCD1	P09032	578 aa	Predicted RBP	5.65	□□□□□ -1.5
SWD2	YKL018W	VMA4	P22203	233 aa	Known RBP	5.65	□□□□□ -1.5
SWD2	YKL018W	NEM1	P38757	446 aa		5.65	□□□□□ -1.5
SWD2	YKL018W	PEX28	P38848	579 aa		5.65	□□□□□ -1.5
SWD2	YKL018W	CTH1	P47976	325 aa		5.65	□□□□□ -1.5
SWD2	YKL018W	ALT1	P52893	592 aa		5.65	□□□□□ -1.5
SWD2	YKL018W	SEN54	Q02825	467 aa	Predicted RBP	5.65	□□□□□ -1.5
SWD2	YKL018W	YML020W	Q03722	664 aa		5.65	□□□□□ -1.5
SWD2	YKL018W	XKS1	P42826	600 aa		5.64	□□□□□ -1.51
SWD2	YKL018W	ADI1	Q03677	179 aa		5.64	□□□□□ -1.51
SWD2	YKL018W	UTP5	Q04177	643 aa	Known RBP	5.64	□□□□□ -1.51
SWD2	YKL018W	POL32	P47110	350 aa		5.63	□□□□□ -1.51
SWD2	YKL018W	EAR1	Q03212	550 aa		5.63	□□□□□ -1.51
SWD2	YKL018W	TPP1	Q03796	238 aa		5.63	□□□□□ -1.51
SWD2	YKL018W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.62	□□□□□ -1.51	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 767.7 ms