RNA–Protein interactions for RNA: YGR109W-B

YGR109W-B, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeastyeast

Gene YGR109W-B, Length 4,644 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YGR109W-BYGR109W-B VPS35P34110 944 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B CYC7P00045 113 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B ATG14P38270 344 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B DOT1Q04089 582 aaKnown RBP2.32□□□□□ -2.04
YGR109W-BYGR109W-B HRK1Q08732 759 aaKnown RBP2.32□□□□□ -2.04
YGR109W-BYGR109W-B HTS1P07263 546 aaKnown RBP2.32□□□□□ -2.04
YGR109W-BYGR109W-B STM1P39015 273 aaKnown RBP2.32□□□□□ -2.04
YGR109W-BYGR109W-B ENT3P47160 408 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B RKM2Q03942 479 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B NPR1P22211 790 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B SEC20P28791 383 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B SCT1P32784 759 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B SMY2P32909 740 aaKnown RBP2.32□□□□□ -2.04
YGR109W-BYGR109W-B KTR2P33550 425 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B YHL008CP38750 627 aa2.32□□□□□ -2.04
YGR109W-BYGR109W-B URN1Q06525 465 aaKnown RBP2.32□□□□□ -2.04
YGR109W-BYGR109W-B KIP3P53086 805 aaKnown RBP2.31□□□□□ -2.04
YGR109W-BYGR109W-B NOC3Q07896 663 aaPredicted RBP2.31□□□□□ -2.04
YGR109W-BYGR109W-B AVO1Q08236 1176 aa2.31□□□□□ -2.04
YGR109W-BYGR109W-B LAP2Q10740 671 aa2.31□□□□□ -2.04
YGR109W-BYGR109W-B NUT1P53114 1132 aa2.31□□□□□ -2.04
YGR109W-BYGR109W-B RCM1P53972 490 aa2.31□□□□□ -2.04
YGR109W-BYGR109W-B INO80P53115 1489 aa2.31□□□□□ -2.04
YGR109W-BYGR109W-B CMR1Q12510 522 aaKnown RBP2.31□□□□□ -2.04
YGR109W-BYGR109W-B SLD2P34252 453 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B REI1P38344 393 aaPredicted RBP2.3□□□□□ -2.04
YGR109W-BYGR109W-B PPX1P38698 397 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B YAF9P53930 226 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B TRP3P00937 484 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B YCS4Q06156 1176 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B OXR1Q08952 273 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B ADP1P25371 1049 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B FOL2P51601 243 aaKnown RBP2.3□□□□□ -2.04
YGR109W-BYGR109W-B ALT1P52893 592 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B SWR1Q05471 1514 aa2.3□□□□□ -2.04
YGR109W-BYGR109W-B RPS4AP0CX35 261 aaKnown RBP2.29□□□□□ -2.04
YGR109W-BYGR109W-B RPS4BP0CX36 261 aaKnown RBP2.29□□□□□ -2.04
YGR109W-BYGR109W-B ERS1P17261 260 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B NOG1Q02892 647 aaKnown RBP2.29□□□□□ -2.04
YGR109W-BYGR109W-B VMA4P22203 233 aaKnown RBP2.29□□□□□ -2.04
YGR109W-BYGR109W-B VPS53P47061 822 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B AVT1P47082 602 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B SRO9P25567 434 aaKnown RBP2.29□□□□□ -2.04
YGR109W-BYGR109W-B MDL2P33311 773 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B GPT2P36148 743 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B CTH1P47976 325 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B CTR9P89105 1077 aa2.29□□□□□ -2.04
YGR109W-BYGR109W-B NFS1P25374 497 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B NAM7P30771 971 aaKnown RBP2.28□□□□□ -2.04
YGR109W-BYGR109W-B GRS1P38088 690 aaKnown RBP2.28□□□□□ -2.04
YGR109W-BYGR109W-B UBP5P39944 805 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B YBL113CQ7M4S9 792 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B DFG16Q99234 619 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B TRL1P09880 827 aaKnown RBP2.28□□□□□ -2.04
YGR109W-BYGR109W-B MCM5P29496 775 aaKnown RBP2.28□□□□□ -2.04
YGR109W-BYGR109W-B DNA2P38859 1522 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B SQT1P35184 431 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B MSH4P40965 878 aaPredicted RBP2.28□□□□□ -2.04
YGR109W-BYGR109W-B MNL2Q12205 849 aa2.28□□□□□ -2.04
YGR109W-BYGR109W-B GLT1Q12680 2145 aaKnown RBP2.28□□□□□ -2.05
YGR109W-BYGR109W-B SCP160P06105 1222 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
YGR109W-BYGR109W-B YAR028WP39548 234 aa2.27□□□□□ -2.05
YGR109W-BYGR109W-B NBA1Q08229 501 aaKnown RBP2.27□□□□□ -2.05
YGR109W-BYGR109W-B TRE1Q08919 783 aa2.27□□□□□ -2.05
YGR109W-BYGR109W-B NUT2Q06213 157 aa2.27□□□□□ -2.05
YGR109W-BYGR109W-B INP54Q08227 384 aaKnown RBP2.27□□□□□ -2.05
YGR109W-BYGR109W-B ERP5P38819 212 aa2.27□□□□□ -2.05
YGR109W-BYGR109W-B COQ4O13525 335 aa2.27□□□□□ -2.05
YGR109W-BYGR109W-B OYE3P41816 400 aaPredicted RBP2.27□□□□□ -2.05
YGR109W-BYGR109W-B MDJ2P42834 146 aa2.27□□□□□ -2.05
YGR109W-BYGR109W-B WHI3P34761 661 aaKnown RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B SSF1P38789 453 aaPredicted RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B KRI1P42846 591 aaKnown RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B YGR045CP53229 120 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B RPN3P40016 523 aaKnown RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B HNT2P49775 206 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B GSF2Q04697 403 aaKnown RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B PUS7Q08647 676 aaKnown RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B HAT1Q12341 374 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B COBP00163 385 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B ASF1P32447 279 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B POL12P38121 705 aaPredicted RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B RIM8P53179 542 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B SNO2P53823 222 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B MCD1Q12158 566 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B YVC1Q12324 675 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B CCZ1P38273 704 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B EXO5P38289 585 aa2.26□□□□□ -2.05
YGR109W-BYGR109W-B MSC6Q08818 692 aaKnown RBP2.26□□□□□ -2.05
YGR109W-BYGR109W-B RPP2AP05319 106 aaKnown RBP2.25□□□□□ -2.05
YGR109W-BYGR109W-B PRP40P33203 583 aaKnown RBP2.25□□□□□ -2.05
YGR109W-BYGR109W-B YHL012WP38709 493 aa2.25□□□□□ -2.05
YGR109W-BYGR109W-B HSP78P33416 811 aa2.25□□□□□ -2.05
YGR109W-BYGR109W-B NOP7P53261 605 aaKnown RBP2.25□□□□□ -2.05
YGR109W-BYGR109W-B YOR352WQ08816 343 aa2.25□□□□□ -2.05
YGR109W-BYGR109W-B SPA2P23201 1466 aaKnown RBP2.25□□□□□ -2.05
YGR109W-BYGR109W-B NAP1P25293 417 aaKnown RBP2.25□□□□□ -2.05
YGR109W-BYGR109W-B RSM26P47141 266 aa2.25□□□□□ -2.05
YGR109W-BYGR109W-B RSA3Q05942 220 aaKnown RBP2.25□□□□□ -2.05
YGR109W-BYGR109W-B YPL260WQ08977 551 aa2.25□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms