RNA–Protein interactions for RNA: YER147C

SCC4, Transcript of Subunit of cohesin loading factor (Scc2p-Scc4p), yeast

Gene SCC4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCC4	YER147C	LCB1	P25045	558 aa	Known RBP	13.44	□□□□□ -0.26
SCC4	YER147C	FRD1	P32614	470 aa	Known RBP	13.44	□□□□□ -0.26
SCC4	YER147C	YHL050C	P38721	697 aa		13.44	□□□□□ -0.26
SCC4	YER147C	ALG2	P43636	503 aa		13.44	□□□□□ -0.26
SCC4	YER147C	MMR1	Q06324	491 aa		13.44	□□□□□ -0.26
SCC4	YER147C	YOR111W	Q99210	232 aa		13.44	□□□□□ -0.26
SCC4	YER147C	RNR3	P21672	869 aa	Known RBP	13.43	□□□□□ -0.26
SCC4	YER147C	PCH2	P38126	564 aa		13.43	□□□□□ -0.26
SCC4	YER147C	PTC5	Q12511	572 aa		13.43	□□□□□ -0.26
SCC4	YER147C	BDF1	P35817	686 aa		13.42	□□□□□ -0.26
SCC4	YER147C	MGA2	P40578	1113 aa		13.42	□□□□□ -0.26
SCC4	YER147C	EIS1	Q05050	843 aa	Known RBP	13.42	□□□□□ -0.26
SCC4	YER147C	CEX1	Q12453	761 aa		13.42	□□□□□ -0.26
SCC4	YER147C	KRE2	P27809	442 aa		13.42	□□□□□ -0.26
SCC4	YER147C	MDL2	P33311	773 aa		13.42	□□□□□ -0.26
SCC4	YER147C	SAP190	P36123	1033 aa		13.42	□□□□□ -0.26
SCC4	YER147C	CSM2	P40465	213 aa		13.42	□□□□□ -0.26
SCC4	YER147C	YFH7	P43591	353 aa		13.42	□□□□□ -0.26
SCC4	YER147C	RIX7	Q07844	837 aa	Known RBP	13.42	□□□□□ -0.26
SCC4	YER147C	PET123	P17558	318 aa		13.4	□□□□□ -0.26
SCC4	YER147C	RIT1	P23796	513 aa		13.4	□□□□□ -0.26
SCC4	YER147C	MSH3	P25336	1018 aa		13.4	□□□□□ -0.26
SCC4	YER147C	MRC1	P25588	1096 aa		13.4	□□□□□ -0.26
SCC4	YER147C	PXL1	P36166	706 aa		13.4	□□□□□ -0.26
SCC4	YER147C	NAF1	P53919	492 aa	Known RBP	13.4	□□□□□ -0.26
SCC4	YER147C	SAS4	Q04003	481 aa		13.4	□□□□□ -0.26
SCC4	YER147C	CIN4	P39110	191 aa		13.4	□□□□□ -0.26
SCC4	YER147C	MYO5	Q04439	1219 aa	Known RBP	13.39	□□□□□ -0.27
SCC4	YER147C	PSF3	Q12146	194 aa		13.39	□□□□□ -0.27
SCC4	YER147C	MET6	P05694	767 aa	Known RBP	13.38	□□□□□ -0.27
SCC4	YER147C	UBP1	P25037	809 aa		13.38	□□□□□ -0.27
SCC4	YER147C	RPG1	P38249	964 aa	Known RBP	13.38	□□□□□ -0.27
SCC4	YER147C	LYS4	P49367	693 aa	Predicted RBP	13.38	□□□□□ -0.27
SCC4	YER147C	PRP31	P49704	494 aa	Predicted RBP	13.38	□□□□□ -0.27
SCC4	YER147C	PIP2	P52960	996 aa		13.38	□□□□□ -0.27
SCC4	YER147C	IRC3	Q06683	689 aa		13.38	□□□□□ -0.27
SCC4	YER147C	YOR296W	Q08748	1289 aa		13.38	□□□□□ -0.27
SCC4	YER147C	ALG1	P16661	449 aa		13.38	□□□□□ -0.27
SCC4	YER147C	RTT107	P38850	1070 aa		13.38	□□□□□ -0.27
SCC4	YER147C	APT1	P49435	187 aa	Known RBP	13.38	□□□□□ -0.27
SCC4	YER147C	RTC4	P53850	401 aa		13.38	□□□□□ -0.27
SCC4	YER147C	YDR341C	Q05506	607 aa	Known RBP	13.38	□□□□□ -0.27
SCC4	YER147C	RAD61	Q99359	647 aa		13.38	□□□□□ -0.27
SCC4	YER147C	HIS4	P00815	799 aa	Known RBP	13.37	□□□□□ -0.27
SCC4	YER147C	CAF20	P12962	161 aa	Known RBP	13.37	□□□□□ -0.27
SCC4	YER147C	RRP43	P25359	394 aa	Predicted RBP	13.37	□□□□□ -0.27
SCC4	YER147C	ALF1	P53904	254 aa		13.37	□□□□□ -0.27
SCC4	YER147C	HPC2	Q01448	625 aa		13.37	□□□□□ -0.27
SCC4	YER147C	YMR074C	Q04773	145 aa		13.37	□□□□□ -0.27
SCC4	YER147C	TIP41	Q12199	356 aa		13.37	□□□□□ -0.27
SCC4	YER147C	SNF3	P10870	884 aa		13.36	□□□□□ -0.27
SCC4	YER147C	CAJ1	P39101	391 aa		13.36	□□□□□ -0.27
SCC4	YER147C	VID27	P40157	782 aa		13.36	□□□□□ -0.27
SCC4	YER147C	LYS14	P40971	790 aa		13.36	□□□□□ -0.27
SCC4	YER147C	JJJ2	P46997	583 aa		13.36	□□□□□ -0.27
SCC4	YER147C	TOS4	Q06266	489 aa		13.36	□□□□□ -0.27
SCC4	YER147C	YPL260W	Q08977	551 aa		13.36	□□□□□ -0.27
SCC4	YER147C	PMD1	P32634	1753 aa		13.36	□□□□□ -0.27
SCC4	YER147C	CDC37	P06101	506 aa	Known RBP	13.36	□□□□□ -0.27
SCC4	YER147C	SEC65	P29478	273 aa		13.36	□□□□□ -0.27
SCC4	YER147C	PRO3	P32263	286 aa	Known RBP	13.36	□□□□□ -0.27
SCC4	YER147C	HIR1	P32479	840 aa		13.36	□□□□□ -0.27
SCC4	YER147C	YET1	P35723	206 aa		13.36	□□□□□ -0.27
SCC4	YER147C	TOS1	P38288	455 aa		13.36	□□□□□ -0.27
SCC4	YER147C	YGR237C	P50089	785 aa		13.36	□□□□□ -0.27
SCC4	YER147C	YGL138C	P53122	345 aa		13.36	□□□□□ -0.27
SCC4	YER147C	UBX2	Q04228	584 aa		13.36	□□□□□ -0.27
SCC4	YER147C	VPS38	Q05919	439 aa		13.36	□□□□□ -0.27
SCC4	YER147C	PSR2	Q07949	397 aa		13.36	□□□□□ -0.27
SCC4	YER147C	STE11	P23561	717 aa		13.35	□□□□□ -0.27
SCC4	YER147C	BCD1	P38772	366 aa		13.35	□□□□□ -0.27
SCC4	YER147C	SIT4	P20604	311 aa		13.34	□□□□□ -0.27
SCC4	YER147C	UBC1	P21734	215 aa	Known RBP	13.34	□□□□□ -0.27
SCC4	YER147C	DAK2	P43550	591 aa		13.34	□□□□□ -0.27
SCC4	YER147C	FYV8	P46949	817 aa	Known RBP	13.34	□□□□□ -0.27
SCC4	YER147C	RPT6	Q01939	405 aa	Known RBP	13.34	□□□□□ -0.27
SCC4	YER147C	GIS4	Q04233	774 aa		13.34	□□□□□ -0.27
SCC4	YER147C	MCM16	Q12262	181 aa		13.34	□□□□□ -0.27
SCC4	YER147C	SPT8	P38915	602 aa		13.33	□□□□□ -0.27
SCC4	YER147C	CAF130	P53280	1122 aa	Predicted RBP	13.33	□□□□□ -0.27
SCC4	YER147C	ATG9	Q12142	997 aa		13.33	□□□□□ -0.27
SCC4	YER147C	SHM1	P37292	490 aa	Predicted RBP	13.33	□□□□□ -0.28
SCC4	YER147C	CTM1	P38818	585 aa		13.33	□□□□□ -0.28
SCC4	YER147C	STO1	P34160	861 aa	Known RBP	13.32	□□□□□ -0.28
SCC4	YER147C	EBS1	Q03466	884 aa	Known RBP	13.32	□□□□□ -0.28
SCC4	YER147C	WRS1	Q12109	432 aa	Known RBP	13.32	□□□□□ -0.28
SCC4	YER147C	FLO1	P32768	1537 aa		13.32	□□□□□ -0.28
SCC4	YER147C	CIT1	P00890	479 aa		13.31	□□□□□ -0.28
SCC4	YER147C	RPS6A	P0CX37	236 aa	Known RBP	13.31	□□□□□ -0.28
SCC4	YER147C	RPS6B	P0CX38	236 aa	Predicted RBP	13.31	□□□□□ -0.28
SCC4	YER147C	STI1	P15705	589 aa	Known RBP RIP-Chip data	13.31	□□□□□ -0.28	not detected
SCC4	YER147C	EFM2	P38347	419 aa		13.31	□□□□□ -0.28
SCC4	YER147C	SEC9	P40357	651 aa		13.31	□□□□□ -0.28
SCC4	YER147C	LSC2	P53312	427 aa		13.31	□□□□□ -0.28
SCC4	YER147C	YOL098C	Q12496	1037 aa		13.31	□□□□□ -0.28
SCC4	YER147C	NDC80	P40460	691 aa		13.3	□□□□□ -0.28
SCC4	YER147C	NSG2	P53898	299 aa		13.3	□□□□□ -0.28
SCC4	YER147C	RBA50	Q04418	439 aa		13.3	□□□□□ -0.28
SCC4	YER147C	SPP382	Q06411	708 aa	Predicted RBP	13.3	□□□□□ -0.28
SCC4	YER147C	HMI1	Q12039	706 aa		13.3	□□□□□ -0.28

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms