RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	NSE3	Q05541	303 aa		5.15	□□□□□ -1.58
UBX5	YDR330W	YOR131C	Q12486	218 aa		5.15	□□□□□ -1.58
UBX5	YDR330W	CAT8	P39113	1433 aa		5.15	□□□□□ -1.59
UBX5	YDR330W	NUP159	P40477	1460 aa		5.15	□□□□□ -1.59
UBX5	YDR330W	PTK2	P47116	818 aa	Known RBP	5.14	□□□□□ -1.59
UBX5	YDR330W	YPL109C	Q02981	657 aa		5.14	□□□□□ -1.59
UBX5	YDR330W	ADI1	Q03677	179 aa		5.14	□□□□□ -1.59
UBX5	YDR330W	CDC53	Q12018	815 aa	Known RBP	5.14	□□□□□ -1.59
UBX5	YDR330W	PSH1	Q12161	406 aa		5.14	□□□□□ -1.59
UBX5	YDR330W	YRF1-1	P0CX20	1796 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	YRF1-5	P0CX21	1796 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	YRF1-8	P0CX22	1796 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	LEU1	P07264	779 aa	Known RBP	5.13	□□□□□ -1.59
UBX5	YDR330W	CDC34	P14682	295 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	MCM5	P29496	775 aa	Known RBP	5.13	□□□□□ -1.59
UBX5	YDR330W	SLA1	P32790	1244 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	DLD1	P32891	587 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	RVS167	P39743	482 aa	Known RBP	5.13	□□□□□ -1.59
UBX5	YDR330W	CUS1	Q02554	436 aa	Predicted RBP	5.13	□□□□□ -1.59
UBX5	YDR330W	ULP1	Q02724	621 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	TY1A-DR3	Q12441	440 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	NUT1	P53114	1132 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	MON1	P53129	644 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	RPN4	Q03465	531 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	MSH6	Q03834	1242 aa		5.13	□□□□□ -1.59
UBX5	YDR330W	EMG1	Q06287	252 aa	Known RBP	5.13	□□□□□ -1.59
UBX5	YDR330W	RRP14	P36080	434 aa	Known RBP	5.12	□□□□□ -1.59
UBX5	YDR330W	YIL165C	P40446	119 aa		5.12	□□□□□ -1.59
UBX5	YDR330W	AIR1	P40507	360 aa	Known RBP	5.12	□□□□□ -1.59
UBX5	YDR330W	SKP1	P52286	194 aa		5.12	□□□□□ -1.59
UBX5	YDR330W	CTR9	P89105	1077 aa		5.12	□□□□□ -1.59
UBX5	YDR330W	PDR12	Q02785	1511 aa		5.12	□□□□□ -1.59
UBX5	YDR330W	PMT7	Q06644	662 aa		5.12	□□□□□ -1.59
UBX5	YDR330W	SPO14	P36126	1683 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	MET5	P47169	1442 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	RPP1A	P05318	106 aa	Predicted RBP	5.11	□□□□□ -1.59
UBX5	YDR330W	RGP1	P16664	663 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	GRX1	P25373	110 aa	Known RBP	5.11	□□□□□ -1.59
UBX5	YDR330W	PYC2	P32327	1180 aa	Known RBP	5.11	□□□□□ -1.59
UBX5	YDR330W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	5.11	□□□□□ -1.59	not detected
UBX5	YDR330W	SQT1	P35184	431 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	APM2	P38700	605 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	FPR3	P38911	411 aa	Known RBP	5.11	□□□□□ -1.59
UBX5	YDR330W	RSM26	P47141	266 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	FAA4	P47912	694 aa	Known RBP	5.11	□□□□□ -1.59
UBX5	YDR330W	LSC2	P53312	427 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	BDF2	Q07442	638 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	RTT10	Q08924	1013 aa		5.11	□□□□□ -1.59
UBX5	YDR330W	PDR10	P51533	1564 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	GDB1	Q06625	1536 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	CIT2	P08679	460 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	UGA4	P32837	571 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	NUP85	P46673	744 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	YJR098C	P47139	656 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	YJR115W	P47152	169 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	UBP15	P50101	1230 aa		5.1	□□□□□ -1.59
UBX5	YDR330W	TDA5	Q06417	326 aa	Known RBP	5.1	□□□□□ -1.59
UBX5	YDR330W	TMA46	Q12000	345 aa	Known RBP	5.1	□□□□□ -1.59
UBX5	YDR330W	COB	P00163	385 aa		5.09	□□□□□ -1.59
UBX5	YDR330W	RAS1	P01119	309 aa		5.09	□□□□□ -1.59
UBX5	YDR330W	RAD27	P26793	382 aa		5.09	□□□□□ -1.59
UBX5	YDR330W	NCL1	P38205	684 aa	Known RBP	5.09	□□□□□ -1.59
UBX5	YDR330W	KRI1	P42846	591 aa	Known RBP	5.09	□□□□□ -1.59
UBX5	YDR330W	ITC1	P53125	1264 aa		5.09	□□□□□ -1.59
UBX5	YDR330W	YGR053C	P53234	283 aa		5.09	□□□□□ -1.59
UBX5	YDR330W	NAN1	Q02931	896 aa	Known RBP	5.09	□□□□□ -1.59
UBX5	YDR330W	ARO1	P08566	1588 aa	Known RBP	5.09	□□□□□ -1.59
UBX5	YDR330W	PRI2	P20457	528 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	PIC2	P40035	300 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	SAP155	P43612	1002 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	ALG12	P53730	551 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	FAR11	P53917	953 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	MRL1	Q06815	381 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	OPI10	Q08202	246 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	FAL1	Q12099	399 aa	Known RBP	5.08	□□□□□ -1.6
UBX5	YDR330W	SRB8	P25648	1427 aa		5.08	□□□□□ -1.6
UBX5	YDR330W	GCR1	P07261	785 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	DUT1	P33317	147 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	5.07	□□□□□ -1.6	not detected
UBX5	YDR330W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.07	□□□□□ -1.6	not detected
UBX5	YDR330W	RSC2	Q06488	889 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	DPS1	P04802	557 aa	Known RBP	5.07	□□□□□ -1.6
UBX5	YDR330W	TAF13	P11747	167 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	RAD4	P14736	754 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	DUR3	P33413	735 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	SHU2	P38957	223 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	SPF1	P39986	1215 aa	Known RBP	5.07	□□□□□ -1.6
UBX5	YDR330W	BUD6	P41697	788 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	XKS1	P42826	600 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	TIM54	P47045	478 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	HUL5	P53119	910 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	TCB1	Q12466	1186 aa		5.07	□□□□□ -1.6
UBX5	YDR330W	NUP157	P40064	1391 aa	Known RBP	5.06	□□□□□ -1.6
UBX5	YDR330W	TAT2	P38967	592 aa		5.06	□□□□□ -1.6
UBX5	YDR330W	YER156C	P40093	338 aa	Known RBP	5.06	□□□□□ -1.6
UBX5	YDR330W	KRE33	P53914	1056 aa	Known RBP	5.06	□□□□□ -1.6
UBX5	YDR330W	UBP2	Q01476	1272 aa		5.06	□□□□□ -1.6
UBX5	YDR330W	BUD3	P25558	1636 aa		5.05	□□□□□ -1.6
UBX5	YDR330W	FUS1	P11710	512 aa		5.05	□□□□□ -1.6
UBX5	YDR330W	MRPL16	P38064	232 aa		5.05	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms