RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	WHI3	P34761	661 aa	Known RBP	5.21	□□□□□ -1.57
ASM4	YDL088C	REI1	P38344	393 aa	Predicted RBP	5.21	□□□□□ -1.57
ASM4	YDL088C	AVT1	P47082	602 aa		5.21	□□□□□ -1.57
ASM4	YDL088C	CTH1	P47976	325 aa		5.21	□□□□□ -1.57
ASM4	YDL088C	MEC3	Q02574	474 aa		5.21	□□□□□ -1.57
ASM4	YDL088C	MAG2	Q06436	670 aa	Known RBP	5.21	□□□□□ -1.57
ASM4	YDL088C	ALG6	Q12001	544 aa	Known RBP	5.21	□□□□□ -1.57
ASM4	YDL088C	PRP5	P21372	849 aa	Predicted RBP	5.21	□□□□□ -1.58
ASM4	YDL088C	CIT3	P43635	486 aa		5.21	□□□□□ -1.58
ASM4	YDL088C	RVS167	P39743	482 aa	Known RBP	5.2	□□□□□ -1.58
ASM4	YDL088C	YAF9	P53930	226 aa		5.2	□□□□□ -1.58
ASM4	YDL088C	SDH1	Q00711	640 aa		5.2	□□□□□ -1.58
ASM4	YDL088C	GPI13	Q07830	1017 aa		5.2	□□□□□ -1.58
ASM4	YDL088C	YKL077W	P36081	392 aa		5.19	□□□□□ -1.58
ASM4	YDL088C	CIC1	P38779	376 aa	Known RBP	5.19	□□□□□ -1.58
ASM4	YDL088C	YHL050C	P38721	697 aa		5.18	□□□□□ -1.58
ASM4	YDL088C	YHR219W	P38900	624 aa		5.18	□□□□□ -1.58
ASM4	YDL088C	IRC24	P40580	263 aa		5.18	□□□□□ -1.58
ASM4	YDL088C	SAP155	P43612	1002 aa		5.18	□□□□□ -1.58
ASM4	YDL088C	AVO1	Q08236	1176 aa		5.18	□□□□□ -1.58
ASM4	YDL088C	RPS4A	P0CX35	261 aa	Known RBP	5.17	□□□□□ -1.58
ASM4	YDL088C	RPS4B	P0CX36	261 aa	Known RBP	5.17	□□□□□ -1.58
ASM4	YDL088C	SHU2	P38957	223 aa		5.17	□□□□□ -1.58
ASM4	YDL088C	RCM1	P53972	490 aa		5.17	□□□□□ -1.58
ASM4	YDL088C	YOR059C	Q08448	450 aa	Known RBP	5.17	□□□□□ -1.58
ASM4	YDL088C	GCD1	P09032	578 aa	Predicted RBP	5.16	□□□□□ -1.58
ASM4	YDL088C	YCS4	Q06156	1176 aa		5.16	□□□□□ -1.58
ASM4	YDL088C	MSH4	P40965	878 aa	Predicted RBP	5.16	□□□□□ -1.58
ASM4	YDL088C	ELA1	P53861	379 aa	Predicted RBP	5.16	□□□□□ -1.58
ASM4	YDL088C	THI12	P42883	340 aa		5.15	□□□□□ -1.59
ASM4	YDL088C	THI5	P43534	340 aa		5.15	□□□□□ -1.59
ASM4	YDL088C	THI11	P47183	340 aa		5.15	□□□□□ -1.59
ASM4	YDL088C	THI13	Q07748	340 aa		5.15	□□□□□ -1.59
ASM4	YDL088C	TY1A-LR4	P0C2I8	440 aa	Known RBP	5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-DR6	P0CX70	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-ER1	P0CX71	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-LR2	P0CX72	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-PL	P0CX73	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-JR1	P0CX74	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-LR3	P0CX75	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-ML2	P0CX76	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	NFS1	P25374	497 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	GCD6	P32501	712 aa	Known RBP	5.14	□□□□□ -1.59
ASM4	YDL088C	ARL1	P38116	183 aa	Known RBP	5.14	□□□□□ -1.59
ASM4	YDL088C	SSF1	P38789	453 aa	Predicted RBP	5.14	□□□□□ -1.59
ASM4	YDL088C	YGR045C	P53229	120 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-GR1	Q12085	440 aa		5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	5.14	□□□□□ -1.59
ASM4	YDL088C	TY1A-OL	Q92392	440 aa	Known RBP	5.14	□□□□□ -1.59
ASM4	YDL088C	ATG14	P38270	344 aa		5.13	□□□□□ -1.59
ASM4	YDL088C	POL12	P38121	705 aa	Predicted RBP	5.12	□□□□□ -1.59
ASM4	YDL088C	STM1	P39015	273 aa	Known RBP	5.12	□□□□□ -1.59
ASM4	YDL088C	SLS1	P42900	643 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	MTR4	P47047	1073 aa	Known RBP	5.12	□□□□□ -1.59
ASM4	YDL088C	PEX13	P80667	386 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	KAR2	P16474	682 aa	Known RBP	5.12	□□□□□ -1.59
ASM4	YDL088C	SMY2	P32909	740 aa	Known RBP	5.12	□□□□□ -1.59
ASM4	YDL088C	VPS35	P34110	944 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	NNK1	P36003	928 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	SEA4	P38164	1038 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	EXO5	P38289	585 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	RSM26	P47141	266 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	ALT1	P52893	592 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	EAR1	Q03212	550 aa		5.12	□□□□□ -1.59
ASM4	YDL088C	SQT1	P35184	431 aa		5.11	□□□□□ -1.59
ASM4	YDL088C	OYE3	P41816	400 aa	Predicted RBP	5.11	□□□□□ -1.59
ASM4	YDL088C	DAL4	Q04895	635 aa		5.11	□□□□□ -1.59
ASM4	YDL088C	OXR1	Q08952	273 aa		5.11	□□□□□ -1.59
ASM4	YDL088C	ADP1	P25371	1049 aa		5.1	□□□□□ -1.59
ASM4	YDL088C	PRP40	P33203	583 aa	Known RBP	5.1	□□□□□ -1.59
ASM4	YDL088C	AOS1	Q06624	347 aa		5.1	□□□□□ -1.59
ASM4	YDL088C	MSC6	Q08818	692 aa	Known RBP	5.1	□□□□□ -1.59
ASM4	YDL088C	PHO4	P07270	312 aa	Known RBP	5.09	□□□□□ -1.59
ASM4	YDL088C	LRG1	P35688	1017 aa		5.09	□□□□□ -1.59
ASM4	YDL088C	PPX1	P38698	397 aa		5.09	□□□□□ -1.59
ASM4	YDL088C	YAR028W	P39548	234 aa		5.09	□□□□□ -1.59
ASM4	YDL088C	TRE1	Q08919	783 aa		5.09	□□□□□ -1.59
ASM4	YDL088C	DFG16	Q99234	619 aa		5.09	□□□□□ -1.59
ASM4	YDL088C	MSH3	P25336	1018 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	HSP78	P33416	811 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	NEM1	P38757	446 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	ECL1	P48235	211 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	TPP1	Q03796	238 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	YVC1	Q12324	675 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	PRO1	P32264	428 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	ELM1	P32801	640 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	UGA4	P32837	571 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	SEG2	P34250	1132 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	HSE1	P38753	452 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	YNR063W	P53749	607 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	ULP1	Q02724	621 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	NOG1	Q02892	647 aa	Known RBP	5.08	□□□□□ -1.6
ASM4	YDL088C	SSY1	Q03770	852 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	LAP2	Q10740	671 aa		5.08	□□□□□ -1.6
ASM4	YDL088C	MET4	P32389	672 aa		5.07	□□□□□ -1.6
ASM4	YDL088C	XKS1	P42826	600 aa		5.07	□□□□□ -1.6
ASM4	YDL088C	DAK2	P43550	591 aa		5.07	□□□□□ -1.6
ASM4	YDL088C	RNQ1	P25367	405 aa		5.06	□□□□□ -1.6
ASM4	YDL088C	SEC20	P28791	383 aa		5.06	□□□□□ -1.6
ASM4	YDL088C	NMD3	P38861	518 aa	Known RBP	5.06	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 60.3 ms