RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C MSH3P25336 1018 aa7.74□□□□□ -1.17
TDP1YBR223C BMH1P29311 267 aaKnown RBP7.74□□□□□ -1.17
TDP1YBR223C MYO3P36006 1272 aa7.74□□□□□ -1.17
TDP1YBR223C SAP190P36123 1033 aa7.74□□□□□ -1.17
TDP1YBR223C PCI8P40512 444 aa7.74□□□□□ -1.17
TDP1YBR223C YFH7P43591 353 aa7.74□□□□□ -1.17
TDP1YBR223C ALD2P47771 506 aa7.74□□□□□ -1.17
TDP1YBR223C MMR1Q06324 491 aa7.74□□□□□ -1.17
TDP1YBR223C AFT2Q08957 416 aa7.74□□□□□ -1.17
TDP1YBR223C YOR111WQ99210 232 aa7.74□□□□□ -1.17
TDP1YBR223C PDC1P06169 563 aaKnown RBP7.73□□□□□ -1.17
TDP1YBR223C RNR3P21672 869 aaKnown RBP7.73□□□□□ -1.17
TDP1YBR223C KRE2P27809 442 aa7.73□□□□□ -1.17
TDP1YBR223C RPG1P38249 964 aaKnown RBP7.73□□□□□ -1.17
TDP1YBR223C YHL050CP38721 697 aa7.73□□□□□ -1.17
TDP1YBR223C LYS4P49367 693 aaPredicted RBP7.73□□□□□ -1.17
TDP1YBR223C PIP2P52960 996 aa7.73□□□□□ -1.17
TDP1YBR223C COG4Q06096 861 aa7.73□□□□□ -1.17
TDP1YBR223C APL4Q12028 832 aa7.73□□□□□ -1.17
TDP1YBR223C PSF3Q12146 194 aa7.73□□□□□ -1.17
TDP1YBR223C CEX1Q12453 761 aa7.73□□□□□ -1.17
TDP1YBR223C CAF20P12962 161 aaKnown RBP7.72□□□□□ -1.17
TDP1YBR223C PET123P17558 318 aa7.72□□□□□ -1.17
TDP1YBR223C MCM3P24279 971 aaKnown RBP7.72□□□□□ -1.17
TDP1YBR223C CSM2P40465 213 aa7.72□□□□□ -1.17
TDP1YBR223C JJJ2P46997 583 aa7.72□□□□□ -1.17
TDP1YBR223C NAF1P53919 492 aaKnown RBP7.72□□□□□ -1.17
TDP1YBR223C YMR074CQ04773 145 aa7.72□□□□□ -1.17
TDP1YBR223C PTC5Q12511 572 aa7.72□□□□□ -1.17
TDP1YBR223C MET6P05694 767 aaKnown RBP7.71□□□□□ -1.17
TDP1YBR223C PET111P08468 800 aa7.71□□□□□ -1.17
TDP1YBR223C PHO13P19881 312 aa7.71□□□□□ -1.17
TDP1YBR223C PCH2P38126 564 aa7.71□□□□□ -1.17
TDP1YBR223C STR2P47164 639 aa7.71□□□□□ -1.17
TDP1YBR223C RTC4P53850 401 aa7.71□□□□□ -1.17
TDP1YBR223C YOR296WQ08748 1289 aa7.71□□□□□ -1.17
TDP1YBR223C TIP41Q12199 356 aa7.71□□□□□ -1.17
TDP1YBR223C FIG2P25653 1609 aa7.71□□□□□ -1.18
TDP1YBR223C CDC37P06101 506 aaKnown RBP7.7□□□□□ -1.18
TDP1YBR223C RRP43P25359 394 aaPredicted RBP7.7□□□□□ -1.18
TDP1YBR223C SPT8P38915 602 aa7.7□□□□□ -1.18
TDP1YBR223C CAJ1P39101 391 aa7.7□□□□□ -1.18
TDP1YBR223C VID27P40157 782 aa7.7□□□□□ -1.18
TDP1YBR223C APT1P49435 187 aaKnown RBP7.7□□□□□ -1.18
TDP1YBR223C PRP31P49704 494 aaPredicted RBP7.7□□□□□ -1.18
TDP1YBR223C UBX2Q04228 584 aa7.7□□□□□ -1.18
TDP1YBR223C YDR341CQ05506 607 aaKnown RBP7.7□□□□□ -1.18
TDP1YBR223C PSR2Q07949 397 aa7.7□□□□□ -1.18
TDP1YBR223C YPL260WQ08977 551 aa7.7□□□□□ -1.18
TDP1YBR223C RAD61Q99359 647 aa7.7□□□□□ -1.18
TDP1YBR223C HIS4P00815 799 aaKnown RBP7.7□□□□□ -1.18
TDP1YBR223C ALG1P16661 449 aa7.7□□□□□ -1.18
TDP1YBR223C MRC1P25588 1096 aa7.7□□□□□ -1.18
TDP1YBR223C TOS1P38288 455 aa7.7□□□□□ -1.18
TDP1YBR223C RTT107P38850 1070 aa7.7□□□□□ -1.18
TDP1YBR223C FYV8P46949 817 aaKnown RBP7.7□□□□□ -1.18
TDP1YBR223C GIS4Q04233 774 aa7.7□□□□□ -1.18
TDP1YBR223C CIT1P00890 479 aa7.69□□□□□ -1.18
TDP1YBR223C SIT4P20604 311 aa7.69□□□□□ -1.18
TDP1YBR223C SEC65P29478 273 aa7.69□□□□□ -1.18
TDP1YBR223C RPT6Q01939 405 aaKnown RBP7.69□□□□□ -1.18
TDP1YBR223C MYO5Q04439 1219 aaKnown RBP7.69□□□□□ -1.18
TDP1YBR223C VPS38Q05919 439 aa7.69□□□□□ -1.18
TDP1YBR223C TOS4Q06266 489 aa7.69□□□□□ -1.18
TDP1YBR223C PMD1P32634 1753 aa7.69□□□□□ -1.18
TDP1YBR223C SNF3P10870 884 aa7.68□□□□□ -1.18
TDP1YBR223C PRO3P32263 286 aaKnown RBP7.68□□□□□ -1.18
TDP1YBR223C CIN4P39110 191 aa7.68□□□□□ -1.18
TDP1YBR223C VPS8P39702 1274 aa7.68□□□□□ -1.18
TDP1YBR223C LYS14P40971 790 aa7.68□□□□□ -1.18
TDP1YBR223C YGR237CP50089 785 aa7.68□□□□□ -1.18
TDP1YBR223C YGL138CP53122 345 aa7.68□□□□□ -1.18
TDP1YBR223C ALF1P53904 254 aa7.68□□□□□ -1.18
TDP1YBR223C BUD31P25337 157 aaPredicted RBP7.67□□□□□ -1.18
TDP1YBR223C RPL8BP29453 256 aaKnown RBP7.67□□□□□ -1.18
TDP1YBR223C HIR1P32479 840 aa7.67□□□□□ -1.18
TDP1YBR223C YET1P35723 206 aa7.67□□□□□ -1.18
TDP1YBR223C CTM1P38818 585 aa7.67□□□□□ -1.18
TDP1YBR223C WRS1Q12109 432 aaKnown RBP7.67□□□□□ -1.18
TDP1YBR223C ATG9Q12142 997 aa7.67□□□□□ -1.18
TDP1YBR223C YOL098CQ12496 1037 aa7.67□□□□□ -1.18
TDP1YBR223C STI1P15705 589 aaKnown RBP RIP-Chip data7.67□□□□□ -1.18not detected
TDP1YBR223C PFF1P38244 976 aa7.67□□□□□ -1.18
TDP1YBR223C BCD1P38772 366 aa7.67□□□□□ -1.18
TDP1YBR223C NDC80P40460 691 aa7.67□□□□□ -1.18
TDP1YBR223C DAK2P43550 591 aa7.67□□□□□ -1.18
TDP1YBR223C APL6P46682 809 aa7.67□□□□□ -1.18
TDP1YBR223C SPP382Q06411 708 aaPredicted RBP7.67□□□□□ -1.18
TDP1YBR223C MCM16Q12262 181 aa7.67□□□□□ -1.18
TDP1YBR223C THR4P16120 514 aaKnown RBP7.66□□□□□ -1.18
TDP1YBR223C UBC1P21734 215 aaKnown RBP7.66□□□□□ -1.18
TDP1YBR223C STO1P34160 861 aaKnown RBP7.66□□□□□ -1.18
TDP1YBR223C REI1P38344 393 aaPredicted RBP7.66□□□□□ -1.18
TDP1YBR223C EFM2P38347 419 aa7.66□□□□□ -1.18
TDP1YBR223C SEC9P40357 651 aa7.66□□□□□ -1.18
TDP1YBR223C CAF130P53280 1122 aaPredicted RBP7.66□□□□□ -1.18
TDP1YBR223C LSC2P53312 427 aa7.66□□□□□ -1.18
TDP1YBR223C EBS1Q03466 884 aaKnown RBP7.66□□□□□ -1.18
TDP1YBR223C TRS120Q04183 1289 aa7.66□□□□□ -1.18
TDP1YBR223C RBA50Q04418 439 aa7.66□□□□□ -1.18
Retrieved 100 of 5,963 RNA–protein pairs in 17.2 ms