RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	GYP7	P48365	746 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	ZDS1	P50111	915 aa	Known RBP	4.17	□□□□□ -1.74
NUP60	YAR002W	FOX2	Q02207	900 aa	Known RBP	4.17	□□□□□ -1.74
NUP60	YAR002W	UTP4	Q06679	776 aa	Known RBP	4.17	□□□□□ -1.74
NUP60	YAR002W	TCB1	Q12466	1186 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	LSO1	Q3E827	93 aa		4.17	□□□□□ -1.74
NUP60	YAR002W	FKS3	Q04952	1785 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	ISC10	P32645	267 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	ERP5	P38819	212 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	STM1	P39015	273 aa	Known RBP	4.16	□□□□□ -1.74
NUP60	YAR002W	YTA6	P40328	754 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	RRT14	P40470	206 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	ATG1	P53104	897 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	CTF4	Q01454	927 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	YDR444W	Q04093	687 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	Q0182	Q9ZZW1	134 aa		4.16	□□□□□ -1.74
NUP60	YAR002W	EDE1	P34216	1381 aa		4.15	□□□□□ -1.74
NUP60	YAR002W	URB1	P34241	1764 aa	Known RBP	4.15	□□□□□ -1.74
NUP60	YAR002W	TRL1	P09880	827 aa	Known RBP	4.15	□□□□□ -1.74
NUP60	YAR002W	IRE1	P32361	1115 aa		4.15	□□□□□ -1.74
NUP60	YAR002W	GLO3	P38682	493 aa	Known RBP	4.15	□□□□□ -1.74
NUP60	YAR002W	OPT2	Q06593	877 aa		4.15	□□□□□ -1.74
NUP60	YAR002W	AOS1	Q06624	347 aa		4.15	□□□□□ -1.74
NUP60	YAR002W	MRPL33	P20084	86 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	MLF3	P32047	452 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	SLA1	P32790	1244 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	GLY1	P37303	387 aa	Known RBP	4.14	□□□□□ -1.75
NUP60	YAR002W	GRS1	P38088	690 aa	Known RBP	4.14	□□□□□ -1.75
NUP60	YAR002W	QDR1	P40475	563 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	XKS1	P42826	600 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	YFR016C	P43597	1233 aa	Known RBP	4.14	□□□□□ -1.75
NUP60	YAR002W	ACF4	P47129	309 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	YNL165W	P53891	406 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	SRT1	Q03175	343 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	RSF2	P46974	1380 aa		4.14	□□□□□ -1.75
NUP60	YAR002W	RPS31	P05759	152 aa	Known RBP	4.13	□□□□□ -1.75
NUP60	YAR002W	SHM1	P37292	490 aa	Predicted RBP	4.13	□□□□□ -1.75
NUP60	YAR002W	YBR287W	P38355	427 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	SPR3	P41901	512 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	BMS1	Q08965	1183 aa	Known RBP	4.13	□□□□□ -1.75
NUP60	YAR002W	TY1A-DR3	Q12441	440 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	COQ4	O13525	335 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	BOI1	P38041	980 aa	Known RBP	4.13	□□□□□ -1.75
NUP60	YAR002W	MDJ2	P42834	146 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	UBP15	P50101	1230 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	SCW11	P53189	542 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	MTC5	Q03897	1148 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	NSE3	Q05541	303 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	APC11	Q12157	165 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	LYS2	P07702	1392 aa		4.13	□□□□□ -1.75
NUP60	YAR002W	KCC4	P25389	1037 aa		4.12	□□□□□ -1.75
NUP60	YAR002W	VMA3	P25515	160 aa		4.12	□□□□□ -1.75
NUP60	YAR002W	SEC20	P28791	383 aa		4.12	□□□□□ -1.75
NUP60	YAR002W	LDH1	P38139	375 aa		4.12	□□□□□ -1.75
NUP60	YAR002W	SEN54	Q02825	467 aa	Predicted RBP	4.12	□□□□□ -1.75
NUP60	YAR002W	LCB5	Q06147	687 aa	Known RBP	4.12	□□□□□ -1.75
NUP60	YAR002W	INP54	Q08227	384 aa	Known RBP	4.12	□□□□□ -1.75
NUP60	YAR002W	NUP145	P49687	1317 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	CDC19	P00549	500 aa	Known RBP	4.11	□□□□□ -1.75
NUP60	YAR002W	RPS19A	P07280	144 aa	Known RBP	4.11	□□□□□ -1.75
NUP60	YAR002W	RPS19B	P07281	144 aa	Predicted RBP	4.11	□□□□□ -1.75
NUP60	YAR002W	PDC6	P26263	563 aa	Known RBP	4.11	□□□□□ -1.75
NUP60	YAR002W	KAP122	P32767	1081 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	OPY1	P38271	328 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	OSH7	P38755	437 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	DYS1	P38791	387 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	YIR014W	P40570	242 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	CSI1	Q04368	295 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	MSC6	Q08818	692 aa	Known RBP	4.11	□□□□□ -1.75
NUP60	YAR002W	PSH1	Q12161	406 aa		4.11	□□□□□ -1.75
NUP60	YAR002W	LEU1	P07264	779 aa	Known RBP	4.1	□□□□□ -1.75
NUP60	YAR002W	YHL050C	P38721	697 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	YNG2	P38806	282 aa	Known RBP	4.1	□□□□□ -1.75
NUP60	YAR002W	YHR219W	P38900	624 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	QDR2	P40474	542 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	MTO1	P53070	669 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	SPO1	P53541	631 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	YOL057W	Q08225	711 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	TY1A-BL	Q12266	440 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	ENT1	Q12518	454 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	RAD4	P14736	754 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	HEM3	P28789	327 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	IME2	P32581	645 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	HXT8	P40886	569 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	SUT1	P53032	299 aa	Known RBP	4.1	□□□□□ -1.75
NUP60	YAR002W	ADE16	P54113	591 aa	Known RBP	4.1	□□□□□ -1.75
NUP60	YAR002W	UFD2	P54860	961 aa		4.1	□□□□□ -1.75
NUP60	YAR002W	ECM16	Q04217	1267 aa	Known RBP	4.1	□□□□□ -1.75
NUP60	YAR002W	RAD24	P32641	659 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	SMC1	P32908	1225 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	PPX1	P38698	397 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	FIR1	P40020	876 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	MEC3	Q02574	474 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	TRS120	Q04183	1289 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	NUT2	Q06213	157 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	ALE1	Q08548	619 aa		4.09	□□□□□ -1.76
NUP60	YAR002W	RPP1A	P05318	106 aa	Predicted RBP	4.08	□□□□□ -1.76
NUP60	YAR002W	MRP7	P12687	371 aa		4.08	□□□□□ -1.76
NUP60	YAR002W	RGP1	P16664	663 aa		4.08	□□□□□ -1.76
NUP60	YAR002W	OSM1	P21375	501 aa	Known RBP	4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 53.9 ms