RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 Gnai3Q9DC51 354 aa16.17■□□□□ 0.18
Nup88-203ENSMUST00000108531 Dnttip2Q8R2M2 758 aaKnown RBP16.17■□□□□ 0.18
Nup88-203ENSMUST00000108531 AU015836B2RUM3 263 aa16.16■□□□□ 0.18
Nup88-203ENSMUST00000108531 Kif1aP33173 1695 aa16.16■□□□□ 0.18
Nup88-203ENSMUST00000108531 Uhrf1bp1lA2RSJ4 1457 aa16.15■□□□□ 0.18
Nup88-203ENSMUST00000108531 Wdr63B2RY71 923 aa16.15■□□□□ 0.18
Nup88-203ENSMUST00000108531 Birc3O08863 600 aa16.15■□□□□ 0.18
Nup88-203ENSMUST00000108531 Pabpn1Q8CCS6 302 aaKnown RBP16.14■□□□□ 0.18
Nup88-203ENSMUST00000108531 Spef2Q8C9J3 1734 aa16.14■□□□□ 0.18
Nup88-203ENSMUST00000108531 Aplp1Q03157 653 aa16.14■□□□□ 0.17
Nup88-203ENSMUST00000108531 Synj2Q9D2G5 1434 aa16.14■□□□□ 0.17
Nup88-203ENSMUST00000108531 Phf14Q9D4H9 881 aa16.13■□□□□ 0.17
Nup88-203ENSMUST00000108531 Gm156Q58A37 223 aa16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Sos1Q62245 1319 aa16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Rsph3aQ3UFY4 516 aa16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Ecm2Q5FW85 670 aa16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Cavin2Q63918 418 aaKnown RBP16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Rsph4aQ8BYM7 716 aa16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Nsfl1cQ9CZ44 370 aaKnown RBP16.12■□□□□ 0.17
Nup88-203ENSMUST00000108531 Tbc1d9Q3UYK3 1264 aa16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 Plcb2A3KGF7 1181 aa16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 Kif20aP97329 887 aa16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 Trim27Q62158 513 aa16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 Cgnl1Q6AW69 1298 aa16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 CarsQ9ER72 831 aaKnown RBP16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 Zc3h13E9Q784 1729 aaKnown RBP16.11■□□□□ 0.17
Nup88-203ENSMUST00000108531 Rfx1P48377 963 aa16.1■□□□□ 0.17
Nup88-203ENSMUST00000108531 Pdcl3Q8BVF2 240 aa16.1■□□□□ 0.17
Nup88-203ENSMUST00000108531 Rsph6aQ8CDR2 708 aa16.1■□□□□ 0.17
Nup88-203ENSMUST00000108531 Ddit3P35639 168 aa16.09■□□□□ 0.17
Nup88-203ENSMUST00000108531 Usp16Q99LG0 825 aa16.09■□□□□ 0.17
Nup88-203ENSMUST00000108531 Dip2aQ8BWT5 1523 aa16.09■□□□□ 0.17
Nup88-203ENSMUST00000108531 Nek4Q9Z1J2 792 aa16.08■□□□□ 0.17
Nup88-203ENSMUST00000108531 MarsQ68FL6 902 aaKnown RBP16.08■□□□□ 0.16
Nup88-203ENSMUST00000108531 Afap1Q80YS6 731 aa16.08■□□□□ 0.16
Nup88-203ENSMUST00000108531 Kdm4cQ8VCD7 1054 aa16.08■□□□□ 0.16
Nup88-203ENSMUST00000108531 HnrnpuQ8VEK3 800 aaKnown RBP16.08■□□□□ 0.16
Nup88-203ENSMUST00000108531 Tfip11Q9ERA6 838 aaKnown RBP16.08■□□□□ 0.16
Nup88-203ENSMUST00000108531 Cabp2Q9JLK4 216 aa16.08■□□□□ 0.16
Nup88-203ENSMUST00000108531 Isy1Q69ZQ2 285 aaKnown RBP16.07■□□□□ 0.16
Nup88-203ENSMUST00000108531 GorabQ8BRM2 368 aa16.07■□□□□ 0.16
Nup88-203ENSMUST00000108531 Kcnn1Q9EQR3 537 aa16.07■□□□□ 0.16
Nup88-203ENSMUST00000108531 PtpruB1AUH1 1446 aa16.06■□□□□ 0.16
Nup88-203ENSMUST00000108531 Idi2Q8BFZ6 227 aa16.06■□□□□ 0.16
Nup88-203ENSMUST00000108531 Hoxb7P09024 217 aa16.06■□□□□ 0.16
Nup88-203ENSMUST00000108531 Mcm10Q0VBD2 885 aa16.06■□□□□ 0.16
Nup88-203ENSMUST00000108531 Eif4g2Q62448 906 aaKnown RBP16.06■□□□□ 0.16
Nup88-203ENSMUST00000108531 U2surpQ6NV83 1029 aaKnown RBP16.06■□□□□ 0.16
Nup88-203ENSMUST00000108531 Kif20bQ80WE4 1774 aaKnown RBP16.05■□□□□ 0.16
Nup88-203ENSMUST00000108531 Il4rP16382 810 aa16.05■□□□□ 0.16
Nup88-203ENSMUST00000108531 Aldh8a1Q8BH00 487 aa16.05■□□□□ 0.16
Nup88-203ENSMUST00000108531 Ric3Q8BPM6 367 aa16.05■□□□□ 0.16
Nup88-203ENSMUST00000108531 Senp3Q9EP97 568 aaKnown RBP16.05■□□□□ 0.16
Nup88-203ENSMUST00000108531 Znf316Q6PGE4 1016 aa16.05■□□□□ 0.16
Nup88-203ENSMUST00000108531 Gemin5Q8BX17 1502 aaKnown RBP16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 Aldh1l2Q8K009 923 aa16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 Kif24Q6NWW5 1356 aa16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 1700010I14RikQ7TPG0 532 aa16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 Gtf2a1Q99PM3 378 aa16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 Gcc1Q9D4H2 778 aa16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 Asxl2Q8BZ32 1370 aa16.04■□□□□ 0.16
Nup88-203ENSMUST00000108531 CenppQ9CZ92 286 aa16.03■□□□□ 0.16
Nup88-203ENSMUST00000108531 Ercc6l2Q9JIM3 1537 aa16.03■□□□□ 0.16
Nup88-203ENSMUST00000108531 Anapc15-psA0A140T8L6 141 aa16.03■□□□□ 0.16
Nup88-203ENSMUST00000108531 Ccdc146E9Q9F7 977 aa16.02■□□□□ 0.16
Nup88-203ENSMUST00000108531 Mcm2P97310 904 aa16.02■□□□□ 0.15
Nup88-203ENSMUST00000108531 Rab11fip3Q8CHD8 1047 aa16.02■□□□□ 0.15
Nup88-203ENSMUST00000108531 Klhdc4Q921I2 584 aa16.02■□□□□ 0.15
Nup88-203ENSMUST00000108531 Stk31Q99MW1 1018 aa16.01■□□□□ 0.15
Nup88-203ENSMUST00000108531 Cps1Q8C196 1500 aa16.01■□□□□ 0.15
Nup88-203ENSMUST00000108531 Triml2E9PW10 424 aa16■□□□□ 0.15
Nup88-203ENSMUST00000108531 RictorQ6QI06 1708 aa16■□□□□ 0.15
Nup88-203ENSMUST00000108531 CatipB9EKE5 520 aa16■□□□□ 0.15
Nup88-203ENSMUST00000108531 Tm6sf1P58749 370 aa16■□□□□ 0.15
Nup88-203ENSMUST00000108531 Casq1O09165 405 aa15.99■□□□□ 0.15
Nup88-203ENSMUST00000108531 4930407I10RikD3Z5T8 1512 aa15.99■□□□□ 0.15
Nup88-203ENSMUST00000108531 DekQ7TNV0 380 aaKnown RBP15.99■□□□□ 0.15
Nup88-203ENSMUST00000108531 EngaseQ8BX80 734 aa15.99■□□□□ 0.15
Nup88-203ENSMUST00000108531 FanclQ9CR14 375 aa15.99■□□□□ 0.15
Nup88-203ENSMUST00000108531 Eif4a2P10630 407 aa15.98■□□□□ 0.15
Nup88-203ENSMUST00000108531 Fam13aQ8BGI4 693 aa15.98■□□□□ 0.15
Nup88-203ENSMUST00000108531 Adgrb1Q3UHD1 1582 aa15.98■□□□□ 0.15
Nup88-203ENSMUST00000108531 NpatQ8BMA5 1420 aa15.98■□□□□ 0.15
Nup88-203ENSMUST00000108531 Ppip5k2Q6ZQB6 1129 aa15.97■□□□□ 0.15
Nup88-203ENSMUST00000108531 Plin1Q8CGN5 517 aa15.97■□□□□ 0.15
Nup88-203ENSMUST00000108531 Mdc1Q5PSV9 1707 aa15.97■□□□□ 0.15
Nup88-203ENSMUST00000108531 Med1Q925J9 1575 aa15.97■□□□□ 0.15
Nup88-203ENSMUST00000108531 Cdk12Q14AX6 1484 aaKnown RBP15.97■□□□□ 0.15
Nup88-203ENSMUST00000108531 Chd4Q6PDQ2 1915 aaKnown RBP15.96■□□□□ 0.15
Nup88-203ENSMUST00000108531 Ppp6r3Q922D4 844 aa15.96■□□□□ 0.15
Nup88-203ENSMUST00000108531 Chl1P70232 1209 aa15.96■□□□□ 0.15
Nup88-203ENSMUST00000108531 Aifm3Q3TY86 605 aa15.96■□□□□ 0.15
Nup88-203ENSMUST00000108531 Pik3c2bE9QAN8 1632 aa15.96■□□□□ 0.15
Nup88-203ENSMUST00000108531 Astn2Q80Z10 1352 aa15.95■□□□□ 0.14
Nup88-203ENSMUST00000108531 Psme1P97371 249 aa15.95■□□□□ 0.14
Nup88-203ENSMUST00000108531 MpripP97434 1024 aa15.95■□□□□ 0.14
Nup88-203ENSMUST00000108531 Nucb1Q02819 459 aaKnown RBP15.95■□□□□ 0.14
Nup88-203ENSMUST00000108531 Dmrtc1Q9D9R7 182 aa15.95■□□□□ 0.14
Nup88-203ENSMUST00000108531 Pdia3P27773 505 aaKnown RBP15.95■□□□□ 0.14
Nup88-203ENSMUST00000108531 Tnrc6bQ8BKI2 1810 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 22,080 RNA–protein pairs in 13.5 ms