Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Gm25239-201ENSMUST00000174915 86 ntBASIC52.48■■■■■ 5.99
Chd4Q6PDQ2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC48.8■■■■■ 5.4
Chd4Q6PDQ2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC47.65■■■■■ 5.22
Chd4Q6PDQ2 Gm24109-201ENSMUST00000175489 103 ntBASIC45.78■■■■■ 4.92
Chd4Q6PDQ2 Gm15042-201ENSMUST00000120212 883 ntBASIC45.71■■■■■ 4.91
Chd4Q6PDQ2 Gm15045-201ENSMUST00000117359 883 ntBASIC45.05■■■■■ 4.8
Chd4Q6PDQ2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC44.44■■■■■ 4.71
Chd4Q6PDQ2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC44.42■■■■■ 4.7
Chd4Q6PDQ2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC44.37■■■■■ 4.69
Chd4Q6PDQ2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC43.91■■■■■ 4.62
Chd4Q6PDQ2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC43.9■■■■■ 4.62
Chd4Q6PDQ2 Gm23366-201ENSMUST00000175022 89 ntBASIC43.67■■■■■ 4.58
Chd4Q6PDQ2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC43.54■■■■■ 4.56
Chd4Q6PDQ2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC42.91■■■■■ 4.46
Chd4Q6PDQ2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC42.62■■■■■ 4.41
Chd4Q6PDQ2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC42.5■■■■■ 4.39
Chd4Q6PDQ2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC42.21■■■■■ 4.35
Chd4Q6PDQ2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC42.2■■■■■ 4.35
Chd4Q6PDQ2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC42.12■■■■■ 4.33
Chd4Q6PDQ2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC41.98■■■■■ 4.31
Chd4Q6PDQ2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC41.98■■■■■ 4.31
Chd4Q6PDQ2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC41.93■■■■■ 4.3
Chd4Q6PDQ2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC41.86■■■■■ 4.29
Chd4Q6PDQ2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC41.79■■■■■ 4.28
Chd4Q6PDQ2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC41.79■■■■■ 4.28
Chd4Q6PDQ2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC41.6■■■■■ 4.25
Chd4Q6PDQ2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC41.59■■■■■ 4.25
Chd4Q6PDQ2 Gm25238-201ENSMUST00000174914 89 ntBASIC41.49■■■■■ 4.23
Chd4Q6PDQ2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC41.47■■■■■ 4.23
Chd4Q6PDQ2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC41.44■■■■■ 4.22
Chd4Q6PDQ2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC41.42■■■■■ 4.22
Chd4Q6PDQ2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC41.4■■■■■ 4.22
Chd4Q6PDQ2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC41.38■■■■■ 4.22
Chd4Q6PDQ2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC41.24■■■■■ 4.19
Chd4Q6PDQ2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC41.11■■■■■ 4.17
Chd4Q6PDQ2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC40.95■■■■■ 4.15
Chd4Q6PDQ2 Psd-208ENSMUST00000224556 2034 ntBASIC40.8■■■■■ 4.12
Chd4Q6PDQ2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC40.63■■■■■ 4.1
Chd4Q6PDQ2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC40.49■■■■■ 4.07
Chd4Q6PDQ2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC40.46■■■■■ 4.07
Chd4Q6PDQ2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC40.33■■■■■ 4.05
Chd4Q6PDQ2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC40.12■■■■■ 4.01
Chd4Q6PDQ2 Gm27325-201ENSMUST00000175467 74 ntBASIC40.1■■■■■ 4.01
Chd4Q6PDQ2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC40.09■■■■■ 4.01
Chd4Q6PDQ2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC40.06■■■■■ 4
Chd4Q6PDQ2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC40.03■■■■■ 4
Chd4Q6PDQ2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC39.88■■■■□ 3.97
Chd4Q6PDQ2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC39.8■■■■□ 3.96
Chd4Q6PDQ2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC39.7■■■■□ 3.95
Chd4Q6PDQ2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC39.68■■■■□ 3.94
Chd4Q6PDQ2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC39.65■■■■□ 3.94
Chd4Q6PDQ2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC39.6■■■■□ 3.93
Chd4Q6PDQ2 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC39.58■■■■□ 3.93
Chd4Q6PDQ2 Gm25262-201ENSMUST00000174934 133 ntBASIC39.51■■■■□ 3.92
Chd4Q6PDQ2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC39.45■■■■□ 3.91
Chd4Q6PDQ2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC39.4■■■■□ 3.9
Chd4Q6PDQ2 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC39.4■■■■□ 3.9
Chd4Q6PDQ2 Rab21-202ENSMUST00000218831 843 ntBASIC39.31■■■■□ 3.88
Chd4Q6PDQ2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC39.29■■■■□ 3.88
Chd4Q6PDQ2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC39.18■■■■□ 3.86
Chd4Q6PDQ2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC39.16■■■■□ 3.86
Chd4Q6PDQ2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC39.13■■■■□ 3.86
Chd4Q6PDQ2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC39.13■■■■□ 3.85
Chd4Q6PDQ2 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
Chd4Q6PDQ2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC39.05■■■■□ 3.84
Chd4Q6PDQ2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC39.05■■■■□ 3.84
Chd4Q6PDQ2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC39.05■■■■□ 3.84
Chd4Q6PDQ2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC39.02■■■■□ 3.84
Chd4Q6PDQ2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC39.01■■■■□ 3.83
Chd4Q6PDQ2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC38.99■■■■□ 3.83
Chd4Q6PDQ2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
Chd4Q6PDQ2 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.8
Chd4Q6PDQ2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC38.81■■■■□ 3.8
Chd4Q6PDQ2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC38.8■■■■□ 3.8
Chd4Q6PDQ2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
Chd4Q6PDQ2 Gm8109-201ENSMUST00000194076 746 ntBASIC38.74■■■■□ 3.79
Chd4Q6PDQ2 Gm26115-201ENSMUST00000175605 87 ntBASIC38.71■■■■□ 3.79
Chd4Q6PDQ2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
Chd4Q6PDQ2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC38.64■■■■□ 3.78
Chd4Q6PDQ2 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC38.61■■■■□ 3.77
Chd4Q6PDQ2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
Chd4Q6PDQ2 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
Chd4Q6PDQ2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC38.51■■■■□ 3.76
Chd4Q6PDQ2 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC38.47■■■■□ 3.75
Chd4Q6PDQ2 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC38.45■■■■□ 3.75
Chd4Q6PDQ2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC38.44■■■■□ 3.74
Chd4Q6PDQ2 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
Chd4Q6PDQ2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC38.35■■■■□ 3.73
Chd4Q6PDQ2 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
Chd4Q6PDQ2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC38.32■■■■□ 3.72
Chd4Q6PDQ2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC38.31■■■■□ 3.72
Chd4Q6PDQ2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC38.29■■■■□ 3.72
Chd4Q6PDQ2 Gm42596-201ENSMUST00000196305 1958 ntBASIC38.29■■■■□ 3.72
Chd4Q6PDQ2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC38.27■■■■□ 3.72
Chd4Q6PDQ2 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC38.23■■■■□ 3.71
Chd4Q6PDQ2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
Chd4Q6PDQ2 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.7
Chd4Q6PDQ2 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
Chd4Q6PDQ2 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
Chd4Q6PDQ2 Gm10524-201ENSMUST00000181931 1893 ntBASIC38.13■■■■□ 3.7
Retrieved 100 of 76,532 protein–RNA pairs in 8.5 ms