RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W NGR1P32831 672 aaKnown RBP7.04□□□□□ -1.28
ATG4YNL223W BBC1P47068 1157 aa7.04□□□□□ -1.28
ATG4YNL223W RLF2Q12495 606 aa7.04□□□□□ -1.28
ATG4YNL223W FPR4Q06205 392 aaPredicted RBP7.04□□□□□ -1.28
ATG4YNL223W THI3Q07471 609 aa7.04□□□□□ -1.28
ATG4YNL223W DPH6Q12429 685 aa7.04□□□□□ -1.28
ATG4YNL223W MGM1P32266 881 aa7.03□□□□□ -1.28
ATG4YNL223W HAL5P38970 855 aaKnown RBP7.03□□□□□ -1.28
ATG4YNL223W ICP55P40051 511 aa7.03□□□□□ -1.28
ATG4YNL223W TRL1P09880 827 aaKnown RBP7.02□□□□□ -1.29
ATG4YNL223W PFF1P38244 976 aa7.02□□□□□ -1.29
ATG4YNL223W GLO3P38682 493 aaKnown RBP7.02□□□□□ -1.29
ATG4YNL223W SRC1Q03707 834 aa7.02□□□□□ -1.29
ATG4YNL223W FIG2P25653 1609 aa7.01□□□□□ -1.29
ATG4YNL223W PIF1P07271 859 aa7.01□□□□□ -1.29
ATG4YNL223W CAF20P12962 161 aaKnown RBP7.01□□□□□ -1.29
ATG4YNL223W SIT4P20604 311 aa7.01□□□□□ -1.29
ATG4YNL223W FRD1P32614 470 aaKnown RBP7.01□□□□□ -1.29
ATG4YNL223W PBY1P38254 753 aa7.01□□□□□ -1.29
ATG4YNL223W OSH3P38713 996 aaKnown RBP7.01□□□□□ -1.29
ATG4YNL223W STM1P39015 273 aaKnown RBP7.01□□□□□ -1.29
ATG4YNL223W IRC3Q06683 689 aa7.01□□□□□ -1.29
ATG4YNL223W RRI2Q12348 645 aa7.01□□□□□ -1.29
ATG4YNL223W SRS2P12954 1174 aa7□□□□□ -1.29
ATG4YNL223W SPL2P38839 148 aa7□□□□□ -1.29
ATG4YNL223W NUG1P40010 520 aaKnown RBP7□□□□□ -1.29
ATG4YNL223W RNR2P09938 399 aaKnown RBP6.99□□□□□ -1.29
ATG4YNL223W SMY1P32364 656 aaKnown RBP6.99□□□□□ -1.29
ATG4YNL223W RPN1P38764 993 aaKnown RBP6.99□□□□□ -1.29
ATG4YNL223W AIM9P40053 627 aaKnown RBP6.99□□□□□ -1.29
ATG4YNL223W SAS4Q04003 481 aa6.99□□□□□ -1.29
ATG4YNL223W LSP1Q12230 341 aaKnown RBP6.99□□□□□ -1.29
ATG4YNL223W OPI1P21957 404 aa6.98□□□□□ -1.29
ATG4YNL223W KRE2P27809 442 aa6.98□□□□□ -1.29
ATG4YNL223W CWH41P53008 833 aa6.98□□□□□ -1.29
ATG4YNL223W RPT4P53549 437 aaKnown RBP6.98□□□□□ -1.29
ATG4YNL223W ERO1Q03103 563 aa6.98□□□□□ -1.29
ATG4YNL223W PKH3Q03306 898 aaPredicted RBP6.98□□□□□ -1.29
ATG4YNL223W LAM4P38800 1345 aa6.98□□□□□ -1.29
ATG4YNL223W ERT1P38140 529 aa6.98□□□□□ -1.29
ATG4YNL223W YMR147WP40218 223 aaKnown RBP6.98□□□□□ -1.29
ATG4YNL223W MSN5P52918 1224 aa6.98□□□□□ -1.29
ATG4YNL223W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.98□□□□□ -1.29not detected
ATG4YNL223W FAS2P19097 1887 aaKnown RBP6.97□□□□□ -1.29
ATG4YNL223W LCB1P25045 558 aaKnown RBP6.97□□□□□ -1.29
ATG4YNL223W VPS24P36095 224 aaKnown RBP6.97□□□□□ -1.29
ATG4YNL223W IRC4Q03036 179 aa6.97□□□□□ -1.29
ATG4YNL223W KAR5Q04746 504 aa6.97□□□□□ -1.29
ATG4YNL223W HKR1P41809 1802 aa6.96□□□□□ -1.29
ATG4YNL223W TPM1P17536 199 aaKnown RBP6.96□□□□□ -1.3
ATG4YNL223W SPO22P40511 975 aa6.96□□□□□ -1.3
ATG4YNL223W YIR042CP40586 236 aa6.96□□□□□ -1.3
ATG4YNL223W KRI1P42846 591 aaKnown RBP6.96□□□□□ -1.3
ATG4YNL223W NPA3P47122 385 aa6.96□□□□□ -1.3
ATG4YNL223W EAF7P53911 425 aaKnown RBP6.96□□□□□ -1.3
ATG4YNL223W VPS20Q04272 221 aa6.96□□□□□ -1.3
ATG4YNL223W INM2Q05533 292 aa6.96□□□□□ -1.3
ATG4YNL223W YKL222CP35995 705 aa6.95□□□□□ -1.3
ATG4YNL223W GRX7P38068 203 aa6.95□□□□□ -1.3
ATG4YNL223W DJP1P40564 432 aa6.95□□□□□ -1.3
ATG4YNL223W EAF6P47128 113 aa6.95□□□□□ -1.3
ATG4YNL223W TAH18Q12181 623 aa6.95□□□□□ -1.3
ATG4YNL223W CYB2P00175 591 aa6.94□□□□□ -1.3
ATG4YNL223W RET1P22276 1149 aaKnown RBP6.94□□□□□ -1.3
ATG4YNL223W NPL4P33755 580 aa6.94□□□□□ -1.3
ATG4YNL223W CIC1P38779 376 aaKnown RBP6.94□□□□□ -1.3
ATG4YNL223W IRC8P47046 822 aa6.94□□□□□ -1.3
ATG4YNL223W UBX2Q04228 584 aa6.94□□□□□ -1.3
ATG4YNL223W PGA3Q12746 312 aaKnown RBP6.94□□□□□ -1.3
ATG4YNL223W RPT3P33298 428 aaKnown RBP6.93□□□□□ -1.3
ATG4YNL223W MET1P36150 593 aa6.93□□□□□ -1.3
ATG4YNL223W SET4P42948 560 aa6.93□□□□□ -1.3
ATG4YNL223W ENP2P48234 707 aaKnown RBP6.93□□□□□ -1.3
ATG4YNL223W TOS4Q06266 489 aa6.93□□□□□ -1.3
ATG4YNL223W PPM2Q08282 695 aa6.93□□□□□ -1.3
ATG4YNL223W CTT1P06115 562 aa6.92□□□□□ -1.3
ATG4YNL223W ROX1P25042 368 aa6.92□□□□□ -1.3
ATG4YNL223W PEP3P27801 918 aa6.92□□□□□ -1.3
ATG4YNL223W SKI2P35207 1287 aaKnown RBP RIP-Chip data6.92□□□□□ -1.3not detected
ATG4YNL223W PTK1P36002 662 aaPredicted RBP6.92□□□□□ -1.3
ATG4YNL223W GEF1P37020 779 aa6.92□□□□□ -1.3
ATG4YNL223W SNF7P39929 240 aaKnown RBP6.92□□□□□ -1.3
ATG4YNL223W YFH7P43591 353 aa6.92□□□□□ -1.3
ATG4YNL223W IOC3P43596 787 aa6.92□□□□□ -1.3
ATG4YNL223W KIN4Q01919 800 aa6.92□□□□□ -1.3
ATG4YNL223W PSF3Q12146 194 aa6.92□□□□□ -1.3
ATG4YNL223W SSF2Q12153 453 aaPredicted RBP6.92□□□□□ -1.3
ATG4YNL223W MSP1P28737 362 aa6.92□□□□□ -1.3
ATG4YNL223W GRX6Q12438 231 aa6.92□□□□□ -1.3
ATG4YNL223W SNF3P10870 884 aa6.91□□□□□ -1.3
ATG4YNL223W COQ1P18900 473 aa6.91□□□□□ -1.3
ATG4YNL223W BOI1P38041 980 aaKnown RBP6.91□□□□□ -1.3
ATG4YNL223W BDH2P39713 417 aa6.91□□□□□ -1.3
ATG4YNL223W VID28P40547 921 aa6.91□□□□□ -1.3
ATG4YNL223W JJJ2P46997 583 aa6.91□□□□□ -1.3
ATG4YNL223W ECM23Q02710 187 aa6.91□□□□□ -1.3
ATG4YNL223W HRQ1Q05549 1077 aa6.91□□□□□ -1.3
ATG4YNL223W WRS1Q12109 432 aaKnown RBP6.91□□□□□ -1.3
ATG4YNL223W RPL19AP0CX82 189 aaKnown RBP6.9□□□□□ -1.31
ATG4YNL223W RPL19BP0CX83 189 aaPredicted RBP6.9□□□□□ -1.31
Retrieved 100 of 5,963 RNA–protein pairs in 34.5 ms