RNA–Protein interactions for RNA: YIL056W

VHR1, Transcript of Transcriptional activator, yeast

Gene VHR1, Length 1,923 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHR1	YIL056W	ERP5	P38819	212 aa		5.15	□□□□□ -1.58
VHR1	YIL056W	LSO1	Q3E827	93 aa		5.15	□□□□□ -1.59
VHR1	YIL056W	NCL1	P38205	684 aa	Known RBP	5.14	□□□□□ -1.59
VHR1	YIL056W	HXT8	P40886	569 aa		5.14	□□□□□ -1.59
VHR1	YIL056W	SPR3	P41901	512 aa		5.14	□□□□□ -1.59
VHR1	YIL056W	ATG1	P53104	897 aa		5.14	□□□□□ -1.59
VHR1	YIL056W	YGR035C	P53222	116 aa		5.14	□□□□□ -1.59
VHR1	YIL056W	SSF1	P38789	453 aa	Predicted RBP	5.13	□□□□□ -1.59
VHR1	YIL056W	ALD2	P47771	506 aa		5.13	□□□□□ -1.59
VHR1	YIL056W	YML020W	Q03722	664 aa		5.13	□□□□□ -1.59
VHR1	YIL056W	RPB10	P22139	70 aa		5.13	□□□□□ -1.59
VHR1	YIL056W	BOI1	P38041	980 aa	Known RBP	5.13	□□□□□ -1.59
VHR1	YIL056W	CUS1	Q02554	436 aa	Predicted RBP	5.13	□□□□□ -1.59
VHR1	YIL056W	SMC1	P32908	1225 aa		5.12	□□□□□ -1.59
VHR1	YIL056W	ISW1	P38144	1129 aa		5.12	□□□□□ -1.59
VHR1	YIL056W	THI12	P42883	340 aa		5.12	□□□□□ -1.59
VHR1	YIL056W	THI5	P43534	340 aa		5.12	□□□□□ -1.59
VHR1	YIL056W	THI11	P47183	340 aa		5.12	□□□□□ -1.59
VHR1	YIL056W	THI13	Q07748	340 aa		5.12	□□□□□ -1.59
VHR1	YIL056W	GIP1	P38229	639 aa		5.11	□□□□□ -1.59
VHR1	YIL056W	STM1	P39015	273 aa	Known RBP	5.11	□□□□□ -1.59
VHR1	YIL056W	ACF4	P47129	309 aa		5.11	□□□□□ -1.59
VHR1	YIL056W	LYS5	P50113	272 aa		5.11	□□□□□ -1.59
VHR1	YIL056W	YDL176W	Q12027	708 aa		5.11	□□□□□ -1.59
VHR1	YIL056W	CCP1	P00431	361 aa		5.1	□□□□□ -1.59
VHR1	YIL056W	BSD2	P38356	321 aa		5.1	□□□□□ -1.59
VHR1	YIL056W	APM2	P38700	605 aa		5.1	□□□□□ -1.59
VHR1	YIL056W	RAD55	P38953	406 aa		5.1	□□□□□ -1.59
VHR1	YIL056W	UFD2	P54860	961 aa		5.1	□□□□□ -1.59
VHR1	YIL056W	YOR296W	Q08748	1289 aa		5.1	□□□□□ -1.59
VHR1	YIL056W	MSN1	P22148	382 aa		5.09	□□□□□ -1.59
VHR1	YIL056W	HPF1	Q05164	967 aa		5.09	□□□□□ -1.59
VHR1	YIL056W	YHL050C	P38721	697 aa		5.09	□□□□□ -1.6
VHR1	YIL056W	YHR219W	P38900	624 aa		5.09	□□□□□ -1.6
VHR1	YIL056W	RPC31	P17890	251 aa		5.08	□□□□□ -1.6
VHR1	YIL056W	ECM2	P38241	364 aa	Known RBP	5.08	□□□□□ -1.6
VHR1	YIL056W	HEH2	Q03281	663 aa		5.08	□□□□□ -1.6
VHR1	YIL056W	APC11	Q12157	165 aa		5.08	□□□□□ -1.6
VHR1	YIL056W	YDR461C-A	Q2V2P7	80 aa		5.08	□□□□□ -1.6
VHR1	YIL056W	TRL1	P09880	827 aa	Known RBP	5.07	□□□□□ -1.6
VHR1	YIL056W	SEC20	P28791	383 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	AIM46	P38885	310 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	MDJ2	P42834	146 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	SKP1	P52286	194 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	TRS120	Q04183	1289 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	SYT1	Q06836	1226 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	DPH6	Q12429	685 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	YNR040W	P53736	256 aa		5.07	□□□□□ -1.6
VHR1	YIL056W	YPL062W	Q02781	134 aa		5.06	□□□□□ -1.6
VHR1	YIL056W	RSC2	Q06488	889 aa		5.06	□□□□□ -1.6
VHR1	YIL056W	IRS4	P36115	615 aa	Known RBP	5.05	□□□□□ -1.6
VHR1	YIL056W	NUT2	Q06213	157 aa		5.05	□□□□□ -1.6
VHR1	YIL056W	NTA1	P40354	457 aa		5.05	□□□□□ -1.6
VHR1	YIL056W	YJL181W	P46987	611 aa		5.05	□□□□□ -1.6
VHR1	YIL056W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	5.04	□□□□□ -1.6	not detected
VHR1	YIL056W	PSY2	P40164	858 aa		5.04	□□□□□ -1.6
VHR1	YIL056W	ITC1	P53125	1264 aa		5.04	□□□□□ -1.6
VHR1	YIL056W	TY1A-DR2	Q03964	440 aa	Known RBP	5.04	□□□□□ -1.6
VHR1	YIL056W	MSC6	Q08818	692 aa	Known RBP	5.04	□□□□□ -1.6
VHR1	YIL056W	RGD2	P43556	714 aa		5.03	□□□□□ -1.6
VHR1	YIL056W	YNL011C	P53980	444 aa		5.03	□□□□□ -1.6
VHR1	YIL056W	TIF6	Q12522	245 aa	Known RBP	5.03	□□□□□ -1.6
VHR1	YIL056W	TRK2	P28584	889 aa		5.03	□□□□□ -1.6
VHR1	YIL056W	IPL1	P38991	367 aa		5.03	□□□□□ -1.6
VHR1	YIL056W	YIL165C	P40446	119 aa		5.03	□□□□□ -1.6
VHR1	YIL056W	FRT1	Q99332	602 aa		5.03	□□□□□ -1.6
VHR1	YIL056W	JJJ3	P47138	172 aa		5.02	□□□□□ -1.61
VHR1	YIL056W	PPT1	P53043	513 aa		5.02	□□□□□ -1.61
VHR1	YIL056W	EMG1	Q06287	252 aa	Known RBP	5.01	□□□□□ -1.61
VHR1	YIL056W	YHL008C	P38750	627 aa		5.01	□□□□□ -1.61
VHR1	YIL056W	PRK1	P40494	810 aa		5.01	□□□□□ -1.61
VHR1	YIL056W	SAM37	P50110	327 aa		5.01	□□□□□ -1.61
VHR1	YIL056W	BSC2	Q05611	235 aa		5.01	□□□□□ -1.61
VHR1	YIL056W	MSC7	P38694	644 aa		5	□□□□□ -1.61
VHR1	YIL056W	PPX1	P38698	397 aa		5	□□□□□ -1.61
VHR1	YIL056W	YNR014W	P53719	212 aa		5	□□□□□ -1.61
VHR1	YIL056W	IDI1	P15496	288 aa		4.99	□□□□□ -1.61
VHR1	YIL056W	KTR2	P33550	425 aa		4.99	□□□□□ -1.61
VHR1	YIL056W	MET1	P36150	593 aa		4.99	□□□□□ -1.61
VHR1	YIL056W	CDC55	Q00362	526 aa		4.99	□□□□□ -1.61
VHR1	YIL056W	NOP8	Q08287	484 aa	Predicted RBP	4.99	□□□□□ -1.61
VHR1	YIL056W	GPM1	P00950	247 aa	Known RBP	4.99	□□□□□ -1.61
VHR1	YIL056W	AI1	P03875	834 aa		4.99	□□□□□ -1.61
VHR1	YIL056W	PDC5	P16467	563 aa	Known RBP	4.99	□□□□□ -1.61
VHR1	YIL056W	ALG14	P38242	237 aa		4.99	□□□□□ -1.61
VHR1	YIL056W	YER156C	P40093	338 aa	Known RBP	4.99	□□□□□ -1.61
VHR1	YIL056W	NOC3	Q07896	663 aa	Predicted RBP	4.99	□□□□□ -1.61
VHR1	YIL056W	HEM3	P28789	327 aa		4.98	□□□□□ -1.61
VHR1	YIL056W	KNS1	P32350	737 aa	Predicted RBP	4.98	□□□□□ -1.61
VHR1	YIL056W	GCD6	P32501	712 aa	Known RBP	4.98	□□□□□ -1.61
VHR1	YIL056W	CIC1	P38779	376 aa	Known RBP	4.98	□□□□□ -1.61
VHR1	YIL056W	SEN54	Q02825	467 aa	Predicted RBP	4.98	□□□□□ -1.61
VHR1	YIL056W	THI72	Q08579	599 aa		4.98	□□□□□ -1.61
VHR1	YIL056W	RSC4	Q02206	625 aa		4.97	□□□□□ -1.61
VHR1	YIL056W	INP54	Q08227	384 aa	Known RBP	4.97	□□□□□ -1.61
VHR1	YIL056W	OXR1	Q08952	273 aa		4.97	□□□□□ -1.61
VHR1	YIL056W	PYC2	P32327	1180 aa	Known RBP	4.96	□□□□□ -1.62
VHR1	YIL056W	MGE1	P38523	228 aa		4.96	□□□□□ -1.62
VHR1	YIL056W	BOI2	P39969	1040 aa		4.96	□□□□□ -1.62
VHR1	YIL056W	POL32	P47110	350 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms