RNA–Protein interactions for RNA: YDL140C

RPO21, Transcript of RNA polymerase II largest subunit B220, yeast

Gene RPO21, Length 5,202 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPO21	YDL140C	NSE5	Q03718	556 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	YCG1	Q06680	1035 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	YPL260W	Q08977	551 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	SRF1	Q12516	437 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	CIR1	P42940	261 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	TUM1	Q08686	304 aa	Known RBP	4.31	□□□□□ -1.72
RPO21	YDL140C	HIF1	Q12373	385 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	UTP9	P38882	575 aa	Known RBP	4.31	□□□□□ -1.72
RPO21	YDL140C	ACF4	P47129	309 aa		4.31	□□□□□ -1.72
RPO21	YDL140C	CIT3	P43635	486 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	FAA4	P47912	694 aa	Known RBP	4.3	□□□□□ -1.72
RPO21	YDL140C	THI22	Q06490	572 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	RET1	P22276	1149 aa	Known RBP	4.3	□□□□□ -1.72
RPO21	YDL140C	DSN1	P40568	576 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	PUS4	P48567	403 aa	Known RBP	4.3	□□□□□ -1.72
RPO21	YDL140C	PMA1	P05030	918 aa	Known RBP	4.3	□□□□□ -1.72
RPO21	YDL140C	CBP1	P07252	654 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	CLC1	P17891	233 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	FRK1	Q03002	865 aa	Predicted RBP	4.3	□□□□□ -1.72
RPO21	YDL140C	CDC45	Q08032	650 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	SMC5	Q08204	1093 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	MSC6	Q08818	692 aa	Known RBP	4.3	□□□□□ -1.72
RPO21	YDL140C	SLM3	Q12093	417 aa		4.3	□□□□□ -1.72
RPO21	YDL140C	VTC2	P43585	828 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	YFR018C	P43599	363 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	YLR257W	Q06146	321 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	ESC2	Q06340	456 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	KRE5	P22023	1365 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	ESC1	Q03661	1658 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	PDR18	P53756	1333 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	RPL8A	P17076	256 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	UBP12	P39538	1254 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	FKH1	P40466	484 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	OYE3	P41816	400 aa	Predicted RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	HFI1	Q12060	488 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	RTS1	P38903	757 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	BNI5	P53890	448 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	PSR2	Q07949	397 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	RAD50	P12753	1312 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	JIP3	O13555	125 aa		4.29	□□□□□ -1.72
RPO21	YDL140C	NGR1	P32831	672 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	PTC3	P34221	468 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	ALD5	P40047	520 aa	Known RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	CEF1	Q03654	590 aa	Predicted RBP	4.29	□□□□□ -1.72
RPO21	YDL140C	SHC1	P39000	512 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	VMA2	P16140	517 aa	Known RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	RPC53	P25441	422 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	BBC1	P47068	1157 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	HGH1	P48362	394 aa	Known RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	RBA50	Q04418	439 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	GEF1	P37020	779 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	YNG2	P38806	282 aa	Known RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	GSF2	Q04697	403 aa	Known RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	SSF2	Q12153	453 aa	Predicted RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	STE11	P23561	717 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	CLB3	P24870	427 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	PER1	P25625	357 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	GRS1	P38088	690 aa	Known RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	URB2	P47108	1174 aa		4.28	□□□□□ -1.72
RPO21	YDL140C	YLR419W	Q06698	1435 aa	Known RBP	4.28	□□□□□ -1.72
RPO21	YDL140C	RAD3	P06839	778 aa		4.28	□□□□□ -1.73
RPO21	YDL140C	FRS2	P15625	503 aa	Known RBP	4.28	□□□□□ -1.73
RPO21	YDL140C	TBS1	P38114	1094 aa		4.28	□□□□□ -1.73
RPO21	YDL140C	BI4	P03879	638 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	SPT15	P13393	240 aa	Known RBP	4.27	□□□□□ -1.73
RPO21	YDL140C	OSH3	P38713	996 aa	Known RBP	4.27	□□□□□ -1.73
RPO21	YDL140C	APL6	P46682	809 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	MRK1	P50873	501 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	VPS5	Q92331	675 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	HEM1	P09950	548 aa	Predicted RBP	4.27	□□□□□ -1.73
RPO21	YDL140C	APN2	P38207	520 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	CST26	P38226	397 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	NIT1	P40447	199 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	TRP2	P00899	507 aa	Known RBP	4.27	□□□□□ -1.73
RPO21	YDL140C	YKL091C	P33324	310 aa	Known RBP	4.27	□□□□□ -1.73
RPO21	YDL140C	YTA6	P40328	754 aa		4.27	□□□□□ -1.73
RPO21	YDL140C	RTC1	Q08281	1341 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	CSM2	P40465	213 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	YGL140C	P53120	1219 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	MLC1	P53141	149 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	VHS3	Q08438	674 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	CET1	O13297	549 aa	Predicted RBP	4.26	□□□□□ -1.73
RPO21	YDL140C	ICL1	P28240	557 aa	Predicted RBP	4.26	□□□□□ -1.73
RPO21	YDL140C	AKL1	P38080	1108 aa	Known RBP	4.26	□□□□□ -1.73
RPO21	YDL140C	ZPR1	P53303	486 aa	Known RBP	4.26	□□□□□ -1.73
RPO21	YDL140C	OPY2	Q06810	360 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	MRP7	P12687	371 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	BRN1	P38170	754 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	YPR084W	Q06821	456 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	TFB4	Q12004	338 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	DNF1	P32660	1571 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	MPH3	P0CE00	602 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	GSY1	P23337	708 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	SAC6	P32599	642 aa	Known RBP	4.26	□□□□□ -1.73
RPO21	YDL140C	TTI1	P36097	1038 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	PEA2	P40091	420 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	BUD6	P41697	788 aa		4.26	□□□□□ -1.73
RPO21	YDL140C	YNL134C	P53912	376 aa	Known RBP	4.25	□□□□□ -1.73
RPO21	YDL140C	SMD2	Q06217	110 aa	Known RBP	4.25	□□□□□ -1.73
RPO21	YDL140C	CDC53	Q12018	815 aa	Known RBP	4.25	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 29.3 ms