RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	PET20	Q99373	253 aa		3.54	□□□□□ -1.84
RRP40	YOL142W	NHP6B	P11633	99 aa	Known RBP	3.53	□□□□□ -1.84
RRP40	YOL142W	SEN2	P16658	377 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	ATG22	P25568	528 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	TRR1	P29509	319 aa	Known RBP	3.53	□□□□□ -1.84
RRP40	YOL142W	RNP1	P32385	249 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	VMA11	P32842	164 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	PDC2	P32896	925 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	RPB7	P34087	171 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	CPR5	P35176	225 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	YHL044W	P38727	235 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	LSM1	P47017	172 aa	Known RBP	3.53	□□□□□ -1.84
RRP40	YOL142W	AIM25	P47140	327 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	SOL1	P50278	321 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	PRM15	Q03262	622 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	FSH2	Q05015	223 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	YDR286C	Q05530	114 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	CSI2	Q08054	341 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	ATP16	Q12165	160 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	RAX2	Q12465	1220 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	YLR365W	Q7LIF2	110 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	ATG40	Q99325	256 aa		3.53	□□□□□ -1.84
RRP40	YOL142W	SPS2	P08459	502 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	MIR1	P23641	311 aa	Known RBP	3.52	□□□□□ -1.85
RRP40	YOL142W	LDS1	P31379	325 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	YHC3	P47040	408 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	OKP1	P53298	406 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	HSK3	P69852	69 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	FIT1	Q04433	528 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	ECM18	Q04623	453 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	RFM1	Q12192	310 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	YPR108W-A	Q3E7B3	70 aa		3.52	□□□□□ -1.85
RRP40	YOL142W	TPI1	P00942	248 aa	Known RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	RPL23A	P0CX41	137 aa	Known RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	RPL23B	P0CX42	137 aa	Known RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	FUS3	P16892	353 aa	Known RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	BUD23	P25627	275 aa	Predicted RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	SPS18	P32572	300 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	MRPL3	P36516	390 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	YBR242W	P38331	238 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	POP2	P39008	433 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	RSM27	P53305	110 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	YML018C	Q03730	393 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	NOC4	Q06512	552 aa	Predicted RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	PRP11	Q07350	266 aa	Predicted RBP	3.51	□□□□□ -1.85
RRP40	YOL142W	YFH1	Q07540	174 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	YOR292C	Q08743	309 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	MED4	Q12343	284 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	BBP1	Q12365	385 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	DGK1	Q12382	290 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	TFC7	Q12415	435 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	UBA3	Q99344	299 aa		3.51	□□□□□ -1.85
RRP40	YOL142W	PUT1	P09368	476 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	YCR016W	P25617	290 aa	Known RBP	3.5	□□□□□ -1.85
RRP40	YOL142W	PAN3	P36102	679 aa	Predicted RBP	3.5	□□□□□ -1.85
RRP40	YOL142W	ADH5	P38113	351 aa	Known RBP	3.5	□□□□□ -1.85
RRP40	YOL142W	POP8	P38208	133 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	BMT5	P40493	336 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	YJL118W	P47022	219 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	NIF3	P53081	288 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	SLX9	P53251	210 aa	Predicted RBP	3.5	□□□□□ -1.85
RRP40	YOL142W	ALG9	P53868	555 aa	Known RBP	3.5	□□□□□ -1.85
RRP40	YOL142W	GIM3	P53900	129 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	THI74	Q04083	370 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	RIM9	Q04734	239 aa		3.5	□□□□□ -1.85
RRP40	YOL142W	RPB9	P27999	122 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	PPQ1	P32945	549 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	YUH1	P35127	236 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	CBT1	P36038	271 aa	Predicted RBP	3.49	□□□□□ -1.85
RRP40	YOL142W	CUE1	P38428	203 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	WSS1	P38838	269 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	IKI1	P38874	309 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	RPA34	P47006	233 aa	Predicted RBP	3.49	□□□□□ -1.85
RRP40	YOL142W	TTI2	P47168	421 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	YGL114W	P53134	725 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	MIX17	Q03667	156 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	VBA1	Q04301	562 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	ADH6	Q04894	360 aa	Known RBP	3.49	□□□□□ -1.85
RRP40	YOL142W	SCP1	Q08873	200 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	RDI1	Q12434	202 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	BOL1	Q3E793	110 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	HUG1	Q6Q5K6	68 aa		3.49	□□□□□ -1.85
RRP40	YOL142W	ARG80	P07249	177 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	MRP17	P28778	131 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	MSK1	P32048	576 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	ERG2	P32352	222 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	TCA17	P32613	152 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	UTP30	P36144	274 aa	Known RBP	3.48	□□□□□ -1.85
RRP40	YOL142W	SMP1	P38128	452 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	CAB5	Q03941	241 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	ARR2	Q06597	130 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	FEX2	Q08991	375 aa		3.48	□□□□□ -1.85
RRP40	YOL142W	CCW14	O13547	238 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	QCR2	P07257	368 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	ROX3	P25046	220 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	YPC1	P38298	316 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.47	□□□□□ -1.85	RIP-Chip
RRP40	YOL142W	PCL7	P40186	285 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	YMR166C	Q03829	368 aa		3.47	□□□□□ -1.85
RRP40	YOL142W	YPD1	Q07688	167 aa		3.47	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 31 ms