RNA–Protein interactions for RNA: YOL038W

PRE6, Transcript of Alpha 4 subunit of the 20S proteasome, yeastyeast

Gene PRE6, Length 765 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE6YOL038W RPD3P32561 433 aa8.4□□□□□ -1.06
PRE6YOL038W YBR242WP38331 238 aa8.4□□□□□ -1.06
PRE6YOL038W GPP2P40106 250 aaKnown RBP8.4□□□□□ -1.06
PRE6YOL038W YKE4P40544 346 aa8.4□□□□□ -1.06
PRE6YOL038W MSE1P48525 536 aa8.4□□□□□ -1.06
PRE6YOL038W HOR7Q05827 59 aa8.4□□□□□ -1.06
PRE6YOL038W PHO92Q06390 306 aa8.4□□□□□ -1.06
PRE6YOL038W RAD23P32628 398 aaKnown RBP8.39□□□□□ -1.07
PRE6YOL038W MRPL3P36516 390 aa8.39□□□□□ -1.07
PRE6YOL038W MRPL27P36526 146 aaPredicted RBP8.39□□□□□ -1.07
PRE6YOL038W PRS4P38063 326 aaPredicted RBP8.39□□□□□ -1.07
PRE6YOL038W POP2P39008 433 aa8.39□□□□□ -1.07
PRE6YOL038W GPG1P53130 126 aa8.39□□□□□ -1.07
PRE6YOL038W BOL1Q3E793 110 aa8.39□□□□□ -1.07
PRE6YOL038W UBA3Q99344 299 aa8.39□□□□□ -1.07
PRE6YOL038W CKA1P15790 372 aa8.38□□□□□ -1.07
PRE6YOL038W YCP4P25349 247 aaKnown RBP8.38□□□□□ -1.07
PRE6YOL038W NOP16P40007 231 aaKnown RBP8.38□□□□□ -1.07
PRE6YOL038W LSM1P47017 172 aaKnown RBP8.38□□□□□ -1.07
PRE6YOL038W SYM1Q06563 197 aa8.38□□□□□ -1.07
PRE6YOL038W RPL9AP05738 191 aaKnown RBP8.37□□□□□ -1.07
PRE6YOL038W STF2P16965 84 aa8.37□□□□□ -1.07
PRE6YOL038W PAN3P36102 679 aaPredicted RBP8.37□□□□□ -1.07
PRE6YOL038W PHM8P40025 321 aa8.37□□□□□ -1.07
PRE6YOL038W BMT5P40493 336 aa8.37□□□□□ -1.07
PRE6YOL038W UBP8P50102 471 aa8.37□□□□□ -1.07
PRE6YOL038W GTF1P53260 183 aaPredicted RBP8.37□□□□□ -1.07
PRE6YOL038W MED4Q12343 284 aa8.37□□□□□ -1.07
PRE6YOL038W PET20Q99373 253 aa8.37□□□□□ -1.07
PRE6YOL038W OLE1P21147 510 aaKnown RBP8.36□□□□□ -1.07
PRE6YOL038W MIR1P23641 311 aaKnown RBP8.36□□□□□ -1.07
PRE6YOL038W TRR1P29509 319 aaKnown RBP8.36□□□□□ -1.07
PRE6YOL038W SYG1P40528 902 aa8.36□□□□□ -1.07
PRE6YOL038W YFH1Q07540 174 aa8.36□□□□□ -1.07
PRE6YOL038W YOR385WQ08909 290 aa8.36□□□□□ -1.07
PRE6YOL038W YLR122CQ12312 125 aa8.36□□□□□ -1.07
PRE6YOL038W SCM3Q12334 223 aa8.36□□□□□ -1.07
PRE6YOL038W YMR31P19955 123 aa8.35□□□□□ -1.07
PRE6YOL038W MSN1P22148 382 aa8.35□□□□□ -1.07
PRE6YOL038W ELO2P25358 347 aa8.35□□□□□ -1.07
PRE6YOL038W VMA8P32610 256 aaKnown RBP8.35□□□□□ -1.07
PRE6YOL038W TRM13Q12383 476 aa8.35□□□□□ -1.07
PRE6YOL038W CPR4P25334 318 aa8.34□□□□□ -1.07
PRE6YOL038W GLY1P37303 387 aaKnown RBP8.34□□□□□ -1.07
PRE6YOL038W LAG1P38703 411 aa8.34□□□□□ -1.07
PRE6YOL038W COS8P38723 381 aa8.34□□□□□ -1.07
PRE6YOL038W PBP4Q07362 185 aaKnown RBP8.34□□□□□ -1.07
PRE6YOL038W IRC23Q08416 157 aa8.34□□□□□ -1.07
PRE6YOL038W SCP1Q08873 200 aa8.34□□□□□ -1.07
PRE6YOL038W NHP6BP11633 99 aaKnown RBP8.33□□□□□ -1.08
PRE6YOL038W YJL163CP46996 555 aa8.33□□□□□ -1.08
PRE6YOL038W RPA34P47006 233 aaPredicted RBP8.33□□□□□ -1.08
PRE6YOL038W COX18P53239 316 aa8.33□□□□□ -1.08
PRE6YOL038W MEH1Q02205 184 aa8.33□□□□□ -1.08
PRE6YOL038W CAB5Q03941 241 aa8.33□□□□□ -1.08
PRE6YOL038W VBA1Q04301 562 aa8.33□□□□□ -1.08
PRE6YOL038W NDE2Q07500 545 aa8.33□□□□□ -1.08
PRE6YOL038W PRM4Q12498 284 aa8.33□□□□□ -1.08
PRE6YOL038W HTB1P02293 131 aaKnown RBP8.32□□□□□ -1.08
PRE6YOL038W YMR181CQ03231 154 aa8.32□□□□□ -1.08
PRE6YOL038W ENV7Q12003 364 aa8.32□□□□□ -1.08
PRE6YOL038W SAR1P20606 190 aaKnown RBP8.31□□□□□ -1.08
PRE6YOL038W MRP17P28778 131 aa8.31□□□□□ -1.08
PRE6YOL038W YPS1P32329 569 aa8.31□□□□□ -1.08
PRE6YOL038W POP8P38208 133 aa8.31□□□□□ -1.08
PRE6YOL038W TOS8P53147 276 aa8.31□□□□□ -1.08
PRE6YOL038W MRPL13Q02204 264 aa8.31□□□□□ -1.08
PRE6YOL038W MRPS16Q02608 121 aa8.31□□□□□ -1.08
PRE6YOL038W THI74Q04083 370 aa8.31□□□□□ -1.08
PRE6YOL038W GCN3P14741 305 aa8.3□□□□□ -1.08
PRE6YOL038W MDM10P18409 493 aa8.3□□□□□ -1.08
PRE6YOL038W YHP1Q04116 353 aa8.3□□□□□ -1.08
PRE6YOL038W RTT103Q05543 409 aa8.3□□□□□ -1.08
PRE6YOL038W YJR112W-AQ3E743 109 aa8.3□□□□□ -1.08
PRE6YOL038W YBR255C-AQ3E776 120 aa8.3□□□□□ -1.08
PRE6YOL038W TFB5Q3E7C1 72 aaPredicted RBP8.3□□□□□ -1.08
PRE6YOL038W ATP3P38077 311 aaKnown RBP8.29□□□□□ -1.08
PRE6YOL038W SMX3P54999 86 aaPredicted RBP8.29□□□□□ -1.08
PRE6YOL038W VPS63O13549 108 aa8.28□□□□□ -1.08
PRE6YOL038W SOD1P00445 154 aaKnown RBP8.28□□□□□ -1.08
PRE6YOL038W NOP1P15646 327 aaKnown RBP8.28□□□□□ -1.08
PRE6YOL038W AUA1P32450 94 aa8.28□□□□□ -1.08
PRE6YOL038W SUA5P32579 426 aa8.28□□□□□ -1.08
PRE6YOL038W YBR144CP34215 104 aa8.28□□□□□ -1.08
PRE6YOL038W BFR1P38934 470 aaKnown RBP RIP-Chip data8.28□□□□□ -1.08not detected
PRE6YOL038W YLR125WQ12138 136 aa8.28□□□□□ -1.08
PRE6YOL038W ARG80P07249 177 aa8.27□□□□□ -1.09
PRE6YOL038W YCR016WP25617 290 aaKnown RBP8.27□□□□□ -1.09
PRE6YOL038W MRPL38P35996 138 aaPredicted RBP8.27□□□□□ -1.09
PRE6YOL038W COX15P40086 486 aa8.27□□□□□ -1.09
PRE6YOL038W DFG10P40526 253 aa8.27□□□□□ -1.09
PRE6YOL038W IRC24P40580 263 aa8.27□□□□□ -1.09
PRE6YOL038W LST8P41318 303 aa8.27□□□□□ -1.09
PRE6YOL038W ARP3P47117 449 aaKnown RBP8.27□□□□□ -1.09
PRE6YOL038W DUO1P53168 247 aaKnown RBP8.27□□□□□ -1.09
PRE6YOL038W HRD1Q08109 551 aa8.27□□□□□ -1.09
PRE6YOL038W YOL029CQ08187 201 aa8.27□□□□□ -1.09
PRE6YOL038W ATG5Q12380 294 aa8.27□□□□□ -1.09
PRE6YOL038W RTG1P32607 177 aa8.26□□□□□ -1.09
PRE6YOL038W FEX2Q08991 375 aa8.26□□□□□ -1.09
Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms