RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	VMR1	P38735	1592 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	TY1B-NL2	Q99337	1749 aa	Known RBP	5.8	□□□□□ -1.48
SEC39	YLR440C	MAL31	P38156	614 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	BNI4	P53858	892 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	MAM3	Q12296	706 aa		5.79	□□□□□ -1.48
SEC39	YLR440C	KIN1	P13185	1064 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	MRF1	P30775	413 aa	Predicted RBP	5.78	□□□□□ -1.48
SEC39	YLR440C	PEX5	P35056	612 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	VHR2	P40041	505 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	YNL247W	P53852	767 aa	Known RBP	5.78	□□□□□ -1.48
SEC39	YLR440C	YNL058C	P53947	316 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	MDM1	Q01846	1127 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	SSF2	Q12153	453 aa	Predicted RBP	5.78	□□□□□ -1.48
SEC39	YLR440C	KEX1	P09620	729 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	CLN1	P20437	546 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	PES4	P39684	611 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	RRB1	Q04225	511 aa	Known RBP	5.78	□□□□□ -1.48
SEC39	YLR440C	ISW2	Q08773	1120 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	YOR389W	Q08912	624 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	NFI1	Q12216	726 aa		5.78	□□□□□ -1.48
SEC39	YLR440C	KAR1	P11927	433 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	BRF1	P29056	596 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	PPH3	P32345	308 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	MET1	P36150	593 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	IES2	P40154	320 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	KEL2	P50090	882 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	ELA1	P53861	379 aa	Predicted RBP	5.77	□□□□□ -1.49
SEC39	YLR440C	COG8	Q04632	607 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	PSR1	Q07800	427 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	NKP1	Q12493	238 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	SWI3	P32591	825 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	PPX1	P38698	397 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	GPI8	P49018	411 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	DNM1	P54861	757 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	SRP1	Q02821	542 aa	Known RBP	5.77	□□□□□ -1.49
SEC39	YLR440C	YOL057W	Q08225	711 aa		5.77	□□□□□ -1.49
SEC39	YLR440C	RUD3	Q12234	484 aa	Known RBP	5.77	□□□□□ -1.49
SEC39	YLR440C	TSR4	P25040	408 aa		5.76	□□□□□ -1.49
SEC39	YLR440C	TPS3	P38426	1054 aa	Known RBP	5.76	□□□□□ -1.49
SEC39	YLR440C	YHR218W	P38899	603 aa		5.76	□□□□□ -1.49
SEC39	YLR440C	MEP1	P40260	492 aa		5.76	□□□□□ -1.49
SEC39	YLR440C	ERV41	Q04651	352 aa		5.76	□□□□□ -1.49
SEC39	YLR440C	AVO1	Q08236	1176 aa		5.76	□□□□□ -1.49
SEC39	YLR440C	LSP1	Q12230	341 aa	Known RBP	5.76	□□□□□ -1.49
SEC39	YLR440C	CDC31	P06704	161 aa	Known RBP	5.75	□□□□□ -1.49
SEC39	YLR440C	SEC6	P32844	805 aa		5.75	□□□□□ -1.49
SEC39	YLR440C	SUB2	Q07478	446 aa	Known RBP	5.75	□□□□□ -1.49
SEC39	YLR440C	PDR5	P33302	1511 aa	Known RBP	5.75	□□□□□ -1.49
SEC39	YLR440C	CYB2	P00175	591 aa		5.75	□□□□□ -1.49
SEC39	YLR440C	RPC37	P36121	282 aa		5.75	□□□□□ -1.49
SEC39	YLR440C	HXT5	P38695	592 aa		5.75	□□□□□ -1.49
SEC39	YLR440C	CST6	P40535	587 aa		5.75	□□□□□ -1.49
SEC39	YLR440C	CCM1	P48237	864 aa	Predicted RBP	5.75	□□□□□ -1.49
SEC39	YLR440C	HUL5	P53119	910 aa		5.75	□□□□□ -1.49
SEC39	YLR440C	UBP1	P25037	809 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	HEM3	P28789	327 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	RPN12	P32496	274 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	RPL17A	P05740	184 aa	Known RBP	5.74	□□□□□ -1.49
SEC39	YLR440C	MAK16	P10962	306 aa	Predicted RBP	5.74	□□□□□ -1.49
SEC39	YLR440C	SSB1	P11484	613 aa	Known RBP	5.74	□□□□□ -1.49
SEC39	YLR440C	CMP2	P14747	604 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	ARC19	P33204	171 aa	Known RBP	5.74	□□□□□ -1.49
SEC39	YLR440C	SSB2	P40150	613 aa	Known RBP	5.74	□□□□□ -1.49
SEC39	YLR440C	SMC3	P47037	1230 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	PHM6	Q05637	104 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	CDC45	Q08032	650 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	TCB1	Q12466	1186 aa		5.74	□□□□□ -1.49
SEC39	YLR440C	NOP14	Q99207	810 aa	Known RBP	5.74	□□□□□ -1.49
SEC39	YLR440C	TFC3	P34111	1160 aa		5.73	□□□□□ -1.49
SEC39	YLR440C	SAS3	P34218	831 aa		5.73	□□□□□ -1.49
SEC39	YLR440C	OPY1	P38271	328 aa		5.73	□□□□□ -1.49
SEC39	YLR440C	NNF1	P47149	201 aa		5.73	□□□□□ -1.49
SEC39	YLR440C	GYP7	P48365	746 aa		5.73	□□□□□ -1.49
SEC39	YLR440C	PCL8	Q08966	492 aa		5.73	□□□□□ -1.49
SEC39	YLR440C	TSR3	Q12094	313 aa	Known RBP	5.73	□□□□□ -1.49
SEC39	YLR440C	MPH3	P0CE00	602 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	ALD2	P47771	506 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	OCA1	P50946	238 aa	Predicted RBP	5.72	□□□□□ -1.49
SEC39	YLR440C	RNH70	P53331	553 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	TIM11	P81449	96 aa	Predicted RBP	5.72	□□□□□ -1.49
SEC39	YLR440C	PUF6	Q04373	656 aa	Known RBP	5.72	□□□□□ -1.49
SEC39	YLR440C	RRP9	Q06506	573 aa	Known RBP	5.72	□□□□□ -1.49
SEC39	YLR440C	KDX1	P36005	433 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	JJJ1	P53863	590 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	CTR9	P89105	1077 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	APC2	Q12440	853 aa		5.72	□□□□□ -1.49
SEC39	YLR440C	THR4	P16120	514 aa	Known RBP	5.71	□□□□□ -1.5
SEC39	YLR440C	GCD6	P32501	712 aa	Known RBP	5.71	□□□□□ -1.5
SEC39	YLR440C	TFG1	P41895	735 aa	Predicted RBP	5.71	□□□□□ -1.5
SEC39	YLR440C	ARR1	Q06596	294 aa		5.71	□□□□□ -1.5
SEC39	YLR440C	SRP54	P20424	541 aa	Known RBP	5.71	□□□□□ -1.5
SEC39	YLR440C	PAF1	P38351	445 aa		5.71	□□□□□ -1.5
SEC39	YLR440C	STM1	P39015	273 aa	Known RBP	5.71	□□□□□ -1.5
SEC39	YLR440C	NSE3	Q05541	303 aa		5.71	□□□□□ -1.5
SEC39	YLR440C	YAH1	Q12184	172 aa	Known RBP	5.71	□□□□□ -1.5
SEC39	YLR440C	YEF3	P16521	1044 aa	Known RBP	5.7	□□□□□ -1.5
SEC39	YLR440C	EFB1	P32471	206 aa	Known RBP	5.7	□□□□□ -1.5
SEC39	YLR440C	RPG1	P38249	964 aa	Known RBP	5.7	□□□□□ -1.5
SEC39	YLR440C	CLP1	Q08685	445 aa	Predicted RBP	5.7	□□□□□ -1.5
SEC39	YLR440C	SWI6	P09959	803 aa		5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms