RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	YML003W	P0CF16	290 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	SEN2	P16658	377 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	SPC29	P33419	253 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	RMD6	P39975	231 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	QRI1	P43123	477 aa	Known RBP	9.1	□□□□□ -0.95
VPS60	YDR486C	GON7	P46984	123 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	HNT2	P49775	206 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	SMX3	P54999	86 aa	Predicted RBP	9.1	□□□□□ -0.95
VPS60	YDR486C	YPL067C	Q02754	198 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	FRE8	Q12209	686 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	WHI5	Q12416	295 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	ATG40	Q99325	256 aa		9.1	□□□□□ -0.95
VPS60	YDR486C	GAL1	P04385	528 aa		9.09	□□□□□ -0.95
VPS60	YDR486C	MNS1	P32906	549 aa		9.09	□□□□□ -0.95
VPS60	YDR486C	RRF1	P38771	230 aa		9.09	□□□□□ -0.95
VPS60	YDR486C	GAT2	P40209	560 aa		9.09	□□□□□ -0.95
VPS60	YDR486C	UPS1	Q05776	175 aa		9.09	□□□□□ -0.95
VPS60	YDR486C	SCP1	Q08873	200 aa		9.09	□□□□□ -0.95
VPS60	YDR486C	PUT1	P09368	476 aa		9.08	□□□□□ -0.96
VPS60	YDR486C	TRR1	P29509	319 aa	Known RBP	9.08	□□□□□ -0.96
VPS60	YDR486C	SOL1	P50278	321 aa		9.08	□□□□□ -0.96
VPS60	YDR486C	SLX9	P53251	210 aa	Predicted RBP	9.08	□□□□□ -0.96
VPS60	YDR486C	FEX2	Q08991	375 aa		9.08	□□□□□ -0.96
VPS60	YDR486C	MED4	Q12343	284 aa		9.08	□□□□□ -0.96
VPS60	YDR486C	YOR192C-C	Q3E736	78 aa		9.08	□□□□□ -0.96
VPS60	YDR486C	YLR365W	Q7LIF2	110 aa		9.08	□□□□□ -0.96
VPS60	YDR486C	MIR1	P23641	311 aa	Known RBP	9.07	□□□□□ -0.96
VPS60	YDR486C	VMA3	P25515	160 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	RPB7	P34087	171 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	YER121W	P40076	114 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	BNA2	P47125	453 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	PEF1	P53238	335 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	YNL046W	P53956	172 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	CAB5	Q03941	241 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	CAC2	Q04199	468 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	YDR286C	Q05530	114 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	RTT103	Q05543	409 aa		9.07	□□□□□ -0.96
VPS60	YDR486C	PML1	Q07930	204 aa	Predicted RBP	9.07	□□□□□ -0.96
VPS60	YDR486C	CKA1	P15790	372 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	SWD2	P36104	329 aa	Predicted RBP	9.06	□□□□□ -0.96
VPS60	YDR486C	NTC20	P38302	140 aa	Predicted RBP	9.06	□□□□□ -0.96
VPS60	YDR486C	COS8	P38723	381 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	9.06	□□□□□ -0.96	not detected
VPS60	YDR486C	SLM1	P40485	686 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	GLR1	P41921	483 aa	Known RBP	9.06	□□□□□ -0.96
VPS60	YDR486C	YGR210C	P42942	411 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	UBP8	P50102	471 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	NIF3	P53081	288 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	YOL118C	Q08259	102 aa		9.06	□□□□□ -0.96
VPS60	YDR486C	CKS1	P20486	150 aa	Known RBP	9.05	□□□□□ -0.96
VPS60	YDR486C	THI74	Q04083	370 aa		9.05	□□□□□ -0.96
VPS60	YDR486C	GMC1	Q04399	608 aa		9.05	□□□□□ -0.96
VPS60	YDR486C	LIP2	Q06005	328 aa		9.05	□□□□□ -0.96
VPS60	YDR486C	FUS3	P16892	353 aa	Known RBP	9.04	□□□□□ -0.96
VPS60	YDR486C	STF2	P16965	84 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	ACB1	P31787	87 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	SUA5	P32579	426 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	OSH7	P38755	437 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	CTR2	P38865	189 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	POP2	P39008	433 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	YER137C	P40083	148 aa	Known RBP	9.04	□□□□□ -0.96
VPS60	YDR486C	TEX1	P53851	422 aa	Known RBP	9.04	□□□□□ -0.96
VPS60	YDR486C	TIM10	P87108	93 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	TSA2	Q04120	196 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	FIT1	Q04433	528 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	SNA4	Q07549	140 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	TMC1	Q08422	150 aa	Predicted RBP	9.04	□□□□□ -0.96
VPS60	YDR486C	FEX1	Q08913	375 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	VAM3	Q12241	283 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	PRM4	Q12498	284 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	YPR108W-A	Q3E7B3	70 aa		9.04	□□□□□ -0.96
VPS60	YDR486C	TFB5	Q3E7C1	72 aa	Predicted RBP	9.04	□□□□□ -0.96
VPS60	YDR486C	TPI1	P00942	248 aa	Known RBP	9.03	□□□□□ -0.96
VPS60	YDR486C	AIM46	P38885	310 aa		9.03	□□□□□ -0.96
VPS60	YDR486C	PRM5	P40476	318 aa		9.03	□□□□□ -0.96
VPS60	YDR486C	BMT5	P40493	336 aa		9.03	□□□□□ -0.96
VPS60	YDR486C	RPA34	P47006	233 aa	Predicted RBP	9.03	□□□□□ -0.96
VPS60	YDR486C	HSK3	P69852	69 aa		9.03	□□□□□ -0.96
VPS60	YDR486C	YOR029W	Q12243	111 aa		9.03	□□□□□ -0.96
VPS60	YDR486C	QCR2	P07257	368 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	LAG1	P38703	411 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	VMA22	P38784	181 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	PAC2	P39937	518 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	MRPL50	P53724	139 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	MRPL22	P53881	309 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	RFM1	Q12192	310 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	WSC3	Q12215	556 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	YMR105W-A	Q8TGS8	64 aa		9.02	□□□□□ -0.97
VPS60	YDR486C	VMA8	P32610	256 aa	Known RBP	9.01	□□□□□ -0.97
VPS60	YDR486C	YUH1	P35127	236 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	GLY1	P37303	387 aa	Known RBP	9.01	□□□□□ -0.97
VPS60	YDR486C	YPC1	P38298	316 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	9.01	□□□□□ -0.97	not detected
VPS60	YDR486C	PIR5	P46999	287 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	XPT1	P47165	209 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	DPB4	Q04603	196 aa	Known RBP	9.01	□□□□□ -0.97
VPS60	YDR486C	RIM9	Q04734	239 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	YLR224W	Q05947	369 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	YDL086W	Q07505	273 aa		9.01	□□□□□ -0.97
VPS60	YDR486C	YBL029C-A	Q3E756	94 aa		9.01	□□□□□ -0.97

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms