RNA–Protein interactions for RNA: YER151C

UBP3, Transcript of Ubiquitin-specific protease involved in transport and osmotic response, yeast

Gene UBP3, Length 2,739 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP3	YER151C	PST2	Q12335	198 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	ERG27	Q12452	347 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	MRX4	Q12467	430 aa		0.79	□□□□□ -2.28
UBP3	YER151C	YCL021W-A	Q96VH3	125 aa		0.79	□□□□□ -2.28
UBP3	YER151C	DDP1	Q99321	188 aa	Known RBP	0.79	□□□□□ -2.28
UBP3	YER151C	GPH1	P06738	902 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	SPT3	P06844	337 aa		0.78	□□□□□ -2.28
UBP3	YER151C	CDC15	P27636	974 aa		0.78	□□□□□ -2.28
UBP3	YER151C	NDC1	P32500	655 aa		0.78	□□□□□ -2.28
UBP3	YER151C	VMA8	P32610	256 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	REC114	P32841	428 aa		0.78	□□□□□ -2.28
UBP3	YER151C	SRB2	P34162	210 aa		0.78	□□□□□ -2.28
UBP3	YER151C	VPS21	P36017	210 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	MED8	P38304	223 aa		0.78	□□□□□ -2.28
UBP3	YER151C	OTU2	P38747	307 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	SMC2	P38989	1170 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	FET3	P38993	636 aa		0.78	□□□□□ -2.28
UBP3	YER151C	SEO1	P39709	593 aa		0.78	□□□□□ -2.28
UBP3	YER151C	YEL057C	P39983	233 aa		0.78	□□□□□ -2.28
UBP3	YER151C	LCP5	P40079	357 aa	Predicted RBP	0.78	□□□□□ -2.28
UBP3	YER151C	AIP1	P46680	615 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	LSM1	P47017	172 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	SDT1	P53078	280 aa		0.78	□□□□□ -2.28
UBP3	YER151C	ERG26	P53199	349 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	YGR111W	P53265	400 aa		0.78	□□□□□ -2.28
UBP3	YER151C	SLM2	P53955	656 aa		0.78	□□□□□ -2.28
UBP3	YER151C	YMR130W	Q04223	302 aa		0.78	□□□□□ -2.28
UBP3	YER151C	SPG4	Q04438	115 aa		0.78	□□□□□ -2.28
UBP3	YER151C	PAL1	Q05518	499 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	YDL144C	Q07589	356 aa		0.78	□□□□□ -2.28
UBP3	YER151C	YEH2	Q07950	538 aa		0.78	□□□□□ -2.28
UBP3	YER151C	RRS1	Q08746	203 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	USB1	Q12208	290 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	YDL180W	Q12301	547 aa		0.78	□□□□□ -2.28
UBP3	YER151C	NOP58	Q12499	511 aa	Known RBP	0.78	□□□□□ -2.28
UBP3	YER151C	SPT15	P13393	240 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	YMR31	P19955	123 aa		0.78	□□□□□ -2.29
UBP3	YER151C	EXG1	P23776	448 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	ALK2	P32789	676 aa	Predicted RBP	0.78	□□□□□ -2.29
UBP3	YER151C	SPT10	P35208	640 aa		0.78	□□□□□ -2.29
UBP3	YER151C	SRL3	P36167	246 aa		0.78	□□□□□ -2.29
UBP3	YER151C	URA8	P38627	578 aa	Predicted RBP	0.78	□□□□□ -2.29
UBP3	YER151C	CCS1	P40202	249 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	BMT5	P40493	336 aa		0.78	□□□□□ -2.29
UBP3	YER151C	LYS12	P40495	371 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	RPS29A	P41057	56 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	PRM10	P42946	383 aa		0.78	□□□□□ -2.29
UBP3	YER151C	RPE1	P46969	238 aa		0.78	□□□□□ -2.29
UBP3	YER151C	YGR219W	P53307	113 aa		0.78	□□□□□ -2.29
UBP3	YER151C	MPA43	P53583	542 aa	Predicted RBP	0.78	□□□□□ -2.29
UBP3	YER151C	APJ1	P53940	528 aa		0.78	□□□□□ -2.29
UBP3	YER151C	SUB1	P54000	292 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	DIG2	Q03373	323 aa	Known RBP	0.78	□□□□□ -2.29
UBP3	YER151C	STE23	Q06010	1027 aa		0.78	□□□□□ -2.29
UBP3	YER151C	NEJ1	Q06148	342 aa		0.78	□□□□□ -2.29
UBP3	YER151C	CTS2	Q06350	511 aa		0.78	□□□□□ -2.29
UBP3	YER151C	PHO92	Q06390	306 aa		0.78	□□□□□ -2.29
UBP3	YER151C	YPR127W	Q06494	345 aa		0.78	□□□□□ -2.29
UBP3	YER151C	MRPL35	Q06678	367 aa		0.78	□□□□□ -2.29
UBP3	YER151C	VIK1	Q12045	647 aa		0.78	□□□□□ -2.29
UBP3	YER151C	DGK1	Q12382	290 aa		0.78	□□□□□ -2.29
UBP3	YER151C	FRE6	Q12473	712 aa		0.78	□□□□□ -2.29
UBP3	YER151C	SKS1	Q12505	502 aa		0.78	□□□□□ -2.29
UBP3	YER151C	UBA3	Q99344	299 aa		0.78	□□□□□ -2.29
UBP3	YER151C	SUI2	P20459	304 aa	Known RBP	0.77	□□□□□ -2.29
UBP3	YER151C	BUD5	P25300	642 aa	Predicted RBP	0.77	□□□□□ -2.29
UBP3	YER151C	RER1	P25560	188 aa		0.77	□□□□□ -2.29
UBP3	YER151C	BLI1	P35727	113 aa		0.77	□□□□□ -2.29
UBP3	YER151C	ECM4	P36156	370 aa		0.77	□□□□□ -2.29
UBP3	YER151C	BNA4	P38169	460 aa		0.77	□□□□□ -2.29
UBP3	YER151C	MRP21	P38175	177 aa		0.77	□□□□□ -2.29
UBP3	YER151C	TCM62	P38228	572 aa	Known RBP	0.77	□□□□□ -2.29
UBP3	YER151C	FES1	P38260	290 aa		0.77	□□□□□ -2.29
UBP3	YER151C	YBR220C	P38318	560 aa		0.77	□□□□□ -2.29
UBP3	YER151C	LYS1	P38998	373 aa	RIP-Chip data	0.77	□□□□□ -2.29	not detected
UBP3	YER151C	ERG28	P40030	148 aa		0.77	□□□□□ -2.29
UBP3	YER151C	YIL029C	P40538	142 aa		0.77	□□□□□ -2.29
UBP3	YER151C	RPS29B	P41058	56 aa	Known RBP	0.77	□□□□□ -2.29
UBP3	YER151C	GLR1	P41921	483 aa	Known RBP	0.77	□□□□□ -2.29
UBP3	YER151C	RRT5	P43607	289 aa		0.77	□□□□□ -2.29
UBP3	YER151C	NCA3	P46955	337 aa		0.77	□□□□□ -2.29
UBP3	YER151C	CTK3	P46963	296 aa	Predicted RBP	0.77	□□□□□ -2.29
UBP3	YER151C	URB2	P47108	1174 aa		0.77	□□□□□ -2.29
UBP3	YER151C	AIM24	P47127	394 aa		0.77	□□□□□ -2.29
UBP3	YER151C	YJR154W	P47181	346 aa		0.77	□□□□□ -2.29
UBP3	YER151C	DIA3	P52290	468 aa		0.77	□□□□□ -2.29
UBP3	YER151C	BTN2	P53286	410 aa		0.77	□□□□□ -2.29
UBP3	YER151C	SKI8	Q02793	397 aa	Predicted RBP	0.77	□□□□□ -2.29
UBP3	YER151C	SRL4	Q03085	281 aa		0.77	□□□□□ -2.29
UBP3	YER151C	ERP1	Q05359	219 aa	Known RBP	0.77	□□□□□ -2.29
UBP3	YER151C	YLR173W	Q06247	608 aa		0.77	□□□□□ -2.29
UBP3	YER151C	SSK1	Q07084	712 aa		0.77	□□□□□ -2.29
UBP3	YER151C	PPT2	Q12036	173 aa		0.77	□□□□□ -2.29
UBP3	YER151C	RLM1	Q12224	676 aa		0.77	□□□□□ -2.29
UBP3	YER151C	IZH2	Q12442	317 aa		0.77	□□□□□ -2.29
UBP3	YER151C	CMC4	Q3E7A9	73 aa		0.77	□□□□□ -2.29
UBP3	YER151C	YPT6	Q99260	215 aa		0.77	□□□□□ -2.29
UBP3	YER151C	ILV1	P00927	576 aa	Known RBP	0.77	□□□□□ -2.29
UBP3	YER151C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	0.77	□□□□□ -2.29	not detected
UBP3	YER151C	COX9	P07255	59 aa		0.77	□□□□□ -2.29

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