RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	ASR1	Q06834	288 aa		4.76	□□□□□ -1.65
UBP9	YER098W	EAF3	Q12432	401 aa		4.76	□□□□□ -1.65
UBP9	YER098W	CBP1	P07252	654 aa		4.76	□□□□□ -1.65
UBP9	YER098W	HNM1	P19807	563 aa		4.76	□□□□□ -1.65
UBP9	YER098W	MTR2	P34232	184 aa	Known RBP	4.76	□□□□□ -1.65
UBP9	YER098W	YNK1	P36010	153 aa	Known RBP	4.76	□□□□□ -1.65
UBP9	YER098W	ERV46	P39727	415 aa		4.76	□□□□□ -1.65
UBP9	YER098W	FIS1	P40515	155 aa		4.76	□□□□□ -1.65
UBP9	YER098W	RPE1	P46969	238 aa		4.76	□□□□□ -1.65
UBP9	YER098W	DOC1	P53068	250 aa		4.76	□□□□□ -1.65
UBP9	YER098W	GTR2	P53290	341 aa		4.76	□□□□□ -1.65
UBP9	YER098W	KIN4	Q01919	800 aa		4.76	□□□□□ -1.65
UBP9	YER098W	NCE102	Q12207	173 aa	RIP-Chip data	4.76	□□□□□ -1.65	not detected
UBP9	YER098W	PEP4	P07267	405 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	RNA14	P25298	677 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	RNQ1	P25367	405 aa		4.75	□□□□□ -1.65
UBP9	YER098W	ADE1	P27616	306 aa		4.75	□□□□□ -1.65
UBP9	YER098W	NAM9	P27929	486 aa		4.75	□□□□□ -1.65
UBP9	YER098W	SSS1	P35179	80 aa		4.75	□□□□□ -1.65
UBP9	YER098W	ASC1	P38011	319 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	PRS3	P38689	320 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	TAD2	P47058	250 aa		4.75	□□□□□ -1.65
UBP9	YER098W	JHD2	P47156	728 aa	Predicted RBP	4.75	□□□□□ -1.65
UBP9	YER098W	ERV14	P53173	138 aa		4.75	□□□□□ -1.65
UBP9	YER098W	YNL181W	P53878	407 aa		4.75	□□□□□ -1.65
UBP9	YER098W	HXT11	P54862	567 aa		4.75	□□□□□ -1.65
UBP9	YER098W	SNO1	Q03144	224 aa		4.75	□□□□□ -1.65
UBP9	YER098W	YOL131W	Q08270	108 aa		4.75	□□□□□ -1.65
UBP9	YER098W	RRP40	Q08285	240 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	YPR063C	Q12160	140 aa		4.75	□□□□□ -1.65
UBP9	YER098W	SET6	Q12529	373 aa		4.75	□□□□□ -1.65
UBP9	YER098W	FIG2	P25653	1609 aa		4.75	□□□□□ -1.65
UBP9	YER098W	HOM2	P13663	365 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	IDP1	P21954	428 aa	Known RBP	4.75	□□□□□ -1.65
UBP9	YER098W	YCR006C	P25350	157 aa		4.75	□□□□□ -1.65
UBP9	YER098W	ERV15	P38312	142 aa		4.75	□□□□□ -1.65
UBP9	YER098W	IKI1	P38874	309 aa		4.75	□□□□□ -1.65
UBP9	YER098W	RRT5	P43607	289 aa		4.75	□□□□□ -1.65
UBP9	YER098W	YGL159W	P53110	370 aa		4.75	□□□□□ -1.65
UBP9	YER098W	ERV29	P53337	310 aa		4.75	□□□□□ -1.65
UBP9	YER098W	TDA1	Q03533	586 aa		4.75	□□□□□ -1.65
UBP9	YER098W	RUB1	Q03919	77 aa		4.75	□□□□□ -1.65
UBP9	YER098W	MDM30	Q05930	598 aa		4.75	□□□□□ -1.65
UBP9	YER098W	YFH1	Q07540	174 aa		4.75	□□□□□ -1.65
UBP9	YER098W	THP1	Q08231	455 aa		4.75	□□□□□ -1.65
UBP9	YER098W	YOR114W	Q12219	294 aa		4.75	□□□□□ -1.65
UBP9	YER098W	JLP1	Q12358	412 aa		4.75	□□□□□ -1.65
UBP9	YER098W	IZH4	Q99393	312 aa		4.75	□□□□□ -1.65
UBP9	YER098W	YMR084W	A2P2R3	262 aa		4.74	□□□□□ -1.65
UBP9	YER098W	SCEI	P03882	235 aa		4.74	□□□□□ -1.65
UBP9	YER098W	UTR1	P21373	530 aa		4.74	□□□□□ -1.65
UBP9	YER098W	PTP1	P25044	335 aa		4.74	□□□□□ -1.65
UBP9	YER098W	PMI40	P29952	429 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	MRP4	P32902	394 aa		4.74	□□□□□ -1.65
UBP9	YER098W	RIB1	P38066	345 aa		4.74	□□□□□ -1.65
UBP9	YER098W	YBL028C	P38202	106 aa		4.74	□□□□□ -1.65
UBP9	YER098W	ARP1	P38696	384 aa		4.74	□□□□□ -1.65
UBP9	YER098W	COS8	P38723	381 aa		4.74	□□□□□ -1.65
UBP9	YER098W	RTC3	P38804	111 aa	Predicted RBP	4.74	□□□□□ -1.65
UBP9	YER098W	PAN6	P40459	309 aa		4.74	□□□□□ -1.65
UBP9	YER098W	GLR1	P41921	483 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	TAX4	P47030	604 aa		4.74	□□□□□ -1.65
UBP9	YER098W	YNR062C	P53748	327 aa		4.74	□□□□□ -1.65
UBP9	YER098W	NUP116	Q02630	1113 aa		4.74	□□□□□ -1.65
UBP9	YER098W	GIP3	Q03016	1276 aa		4.74	□□□□□ -1.65
UBP9	YER098W	ODC1	Q03028	310 aa		4.74	□□□□□ -1.65
UBP9	YER098W	RRT8	Q08219	342 aa		4.74	□□□□□ -1.65
UBP9	YER098W	SIA1	Q12212	622 aa		4.74	□□□□□ -1.65
UBP9	YER098W	PKH2	Q12236	1081 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	SFM1	Q12314	213 aa		4.74	□□□□□ -1.65
UBP9	YER098W	ECM29	P38737	1868 aa		4.74	□□□□□ -1.65
UBP9	YER098W	YEL009C-A	A0A023PZF2	135 aa		4.74	□□□□□ -1.65
UBP9	YER098W	TDH1	P00360	332 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	RPL25	P04456	142 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	RIP1	P08067	215 aa		4.74	□□□□□ -1.65
UBP9	YER098W	NUP1	P20676	1076 aa		4.74	□□□□□ -1.65
UBP9	YER098W	YCP4	P25349	247 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	GEX1	P25596	615 aa		4.74	□□□□□ -1.65
UBP9	YER098W	HOM6	P31116	359 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	ECT1	P33412	323 aa		4.74	□□□□□ -1.65
UBP9	YER098W	TMA19	P35691	167 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	FRE2	P36033	711 aa		4.74	□□□□□ -1.65
UBP9	YER098W	LSM4	P40070	187 aa	Known RBP	4.74	□□□□□ -1.65
UBP9	YER098W	PGD1	P40356	397 aa		4.74	□□□□□ -1.65
UBP9	YER098W	YIP5	P53108	310 aa		4.74	□□□□□ -1.65
UBP9	YER098W	DUG3	P53871	357 aa		4.74	□□□□□ -1.65
UBP9	YER098W	EMI1	Q04406	187 aa		4.74	□□□□□ -1.65
UBP9	YER098W	DIB1	Q06819	143 aa	Predicted RBP	4.74	□□□□□ -1.65
UBP9	YER098W	SNF8	Q12483	233 aa		4.74	□□□□□ -1.65
UBP9	YER098W	MRP1	P10662	321 aa	Known RBP	4.73	□□□□□ -1.65
UBP9	YER098W	SCH9	P11792	824 aa	Known RBP	4.73	□□□□□ -1.65
UBP9	YER098W	PUT4	P15380	627 aa		4.73	□□□□□ -1.65
UBP9	YER098W	DCC1	P25559	380 aa		4.73	□□□□□ -1.65
UBP9	YER098W	COX13	P32799	129 aa		4.73	□□□□□ -1.65
UBP9	YER098W	SHP1	P34223	423 aa		4.73	□□□□□ -1.65
UBP9	YER098W	SOL2	P37262	315 aa		4.73	□□□□□ -1.65
UBP9	YER098W	SCO2	P38072	301 aa		4.73	□□□□□ -1.65
UBP9	YER098W	CHK1	P38147	527 aa		4.73	□□□□□ -1.65
UBP9	YER098W	MDM31	P38880	579 aa		4.73	□□□□□ -1.65
UBP9	YER098W	NVJ1	P38881	321 aa		4.73	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms