RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	MEP2	P41948	499 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	EMC2	P47133	292 aa	Known RBP	3.5	□□□□□ -1.85
UBX5	YDR330W	EMC4	P53073	190 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	MPS1	P54199	764 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	TMA20	P89886	181 aa	Predicted RBP	3.5	□□□□□ -1.85
UBX5	YDR330W	SPR6	Q01684	191 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	PEX12	Q04370	399 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	BCH1	Q05029	724 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	GPI11	Q06636	219 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	LOT6	Q07923	191 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	PST1	Q12355	444 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	PFK27	Q12471	397 aa	Predicted RBP	3.5	□□□□□ -1.85
UBX5	YDR330W	MHT1	Q12525	324 aa		3.5	□□□□□ -1.85
UBX5	YDR330W	RAS2	P01120	322 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	RAD7	P06779	565 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	STE3	P06783	470 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	RSR1	P13856	272 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	FBA1	P14540	359 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	SLM5	P25345	492 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	PTR2	P32901	601 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SUR1	P33300	382 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YKR015C	P36111	568 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YBR285W	P38354	144 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	RBG1	P39729	369 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	MTW1	P39731	289 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	PCL7	P40186	285 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	OSW5	P40219	148 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	IKS1	P47042	667 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	VEL1	P53058	206 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SCW4	P53334	386 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	RSN1	Q03516	953 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	BET5	Q03630	159 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	VHS1	Q03785	461 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SMP3	Q04174	516 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YMR034C	Q05131	434 aa	Predicted RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	MFG1	Q07684	458 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YOL131W	Q08270	108 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	GEP3	Q08622	556 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	ORT1	Q12375	292 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	RPN6	Q12377	434 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YCL012C	Q8J0M4	134 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	RHO1	P06780	209 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	KSS1	P14681	368 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	FAR1	P21268	830 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	EPT1	P22140	391 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	PEX3	P28795	441 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	ATO2	P32907	282 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SPT10	P35208	640 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	ECM4	P36156	370 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SOL2	P37262	315 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YCR087C-A	P37263	153 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	THO1	P40040	218 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	YJL070C	P40361	888 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	UTP18	P40362	594 aa	Predicted RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	YIL152W	P40455	235 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YRB2	P40517	327 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	ERG10	P41338	398 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	GCN20	P43535	752 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	FLC3	P53121	802 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	MPS2	P53159	387 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YGR015C	P53208	328 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YNR048W	P53740	393 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	STD1	Q02794	444 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	MRP51	Q02950	344 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	MET31	Q03081	177 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YMR099C	Q03161	297 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	YMR010W	Q03687	405 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	CCE1	Q03702	353 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	NUP53	Q03790	475 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	EMI1	Q04406	187 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SMA2	Q04658	369 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	FMP42	Q04991	504 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	SSQ1	Q05931	657 aa	Predicted RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	SNT309	Q06091	175 aa	Predicted RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	RRP9	Q06506	573 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	DTD1	Q07648	150 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	YLL007C	Q07799	665 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	TIM18	Q08749	192 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	RSA1	Q08932	381 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YPR022C	Q12139	1133 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	YPL245W	Q12179	454 aa	Known RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	RRP42	Q12277	265 aa	Predicted RBP	3.49	□□□□□ -1.85
UBX5	YDR330W	SFG1	Q12507	346 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	MHF2	Q3E829	80 aa		3.49	□□□□□ -1.85
UBX5	YDR330W	CPA1	P07258	411 aa	Known RBP	3.48	□□□□□ -1.85
UBX5	YDR330W	UBC8	P28263	218 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	NTG1	P31378	399 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	RIB1	P38066	345 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	IML3	P38265	245 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	GOS1	P38736	223 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	SHO1	P40073	367 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	MOB1	P40484	314 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	MSS2	P40990	351 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	YJR030C	P47101	745 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	YJR149W	P47177	404 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	PHB2	P50085	310 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	MDM34	P53083	459 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	SWC4	P53201	476 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	YNL260C	P53846	198 aa		3.48	□□□□□ -1.85
UBX5	YDR330W	WTM1	Q12363	437 aa	Known RBP	3.48	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms