RNA–Protein interactions for RNA: YDL139C

SCM3, Transcript of Nonhistone component of centromeric chromatin, yeast

Gene SCM3, Length 672 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCM3	YDL139C	ALK1	P43633	760 aa	Known RBP	4.64	□□□□□ -1.67
SCM3	YDL139C	VMA10	P48836	114 aa	Known RBP	4.64	□□□□□ -1.67
SCM3	YDL139C	GPI8	P49018	411 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	ESF2	P53743	316 aa	Known RBP	4.64	□□□□□ -1.67
SCM3	YDL139C	TMA20	P89886	181 aa	Predicted RBP	4.64	□□□□□ -1.67
SCM3	YDL139C	NUP49	Q02199	472 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	YPL068C	Q02749	293 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	NAT4	Q04751	285 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	YML053C	Q04978	212 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	ARV1	Q06541	321 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	AIM6	Q07716	390 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	YDR262W	Q12331	272 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	MHF1	Q3E835	90 aa		4.64	□□□□□ -1.67
SCM3	YDL139C	FAR1	P21268	830 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	GPI12	P23797	304 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	YMC1	P32331	307 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	SNU114	P36048	1008 aa	Known RBP	4.63	□□□□□ -1.67
SCM3	YDL139C	YPK3	P38070	525 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	ARN2	P38724	620 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	YHK8	P38776	514 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	BIG1	P38813	335 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	PTH1	P38876	190 aa	Known RBP	4.63	□□□□□ -1.67
SCM3	YDL139C	ALP1	P38971	573 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	SNM1	P40993	198 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	SNO3	P43544	222 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	SWP82	P43554	623 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	IBA57	P47158	497 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	SHE4	P51534	789 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	MPC1	P53157	130 aa	Known RBP	4.63	□□□□□ -1.67
SCM3	YDL139C	MRH4	P53166	561 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	YGR168C	P53293	376 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	DBP6	P53734	629 aa	Known RBP	4.63	□□□□□ -1.67
SCM3	YDL139C	COG5	P53951	403 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	ASI1	P54074	624 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	MRPL13	Q02204	264 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	OST6	Q03723	332 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	RIM13	Q03792	727 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	RRT8	Q08219	342 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	RKM1	Q08961	583 aa	Predicted RBP	4.63	□□□□□ -1.67
SCM3	YDL139C	TRM10	Q12400	293 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	MED11	Q99278	115 aa		4.63	□□□□□ -1.67
SCM3	YDL139C	KIN28	P06242	306 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	ADE5,7	P07244	802 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	YOL162W	P0CF19	215 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	RPL20A	P0CX23	172 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	RPL20B	P0CX24	172 aa	Predicted RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	RPL24B	P24000	155 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	YCR061W	P25639	631 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	RPL5	P26321	297 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	OAC1	P32332	324 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	LOT5	P34234	306 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	TPO5	P36029	618 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	DOA1	P36037	715 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	FES1	P38260	290 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	SDH8	P38345	138 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	YHR210C	P38893	341 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	TPA1	P40032	644 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	YJL218W	P40892	196 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	YGR201C	P42936	225 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	GCN20	P43535	752 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	RBG2	P53295	368 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	CPR8	P53728	308 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	NGL2	Q03264	515 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	YMR252C	Q04814	134 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	NMA1	Q06178	401 aa	Known RBP	4.62	□□□□□ -1.67
SCM3	YDL139C	ATG17	Q06410	417 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	YPL191C	Q08930	360 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	YDL211C	Q12121	372 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	RBD2	Q12270	262 aa		4.62	□□□□□ -1.67
SCM3	YDL139C	RPN13	O13563	156 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	NFT1	P0CE68	1218 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	CBS1	P14066	229 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	CTA1	P15202	515 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	POL30	P15873	258 aa	Known RBP	4.61	□□□□□ -1.67
SCM3	YDL139C	AAC3	P18238	307 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	PCL1	P24867	279 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	CWP1	P28319	239 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	HSP150	P32478	413 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	SRB5	P32585	307 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	NPL6	P32832	435 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	RIB7	P33312	244 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	GPX2	P38143	162 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	YPT10	P38146	199 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	IFA38	P38286	347 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	PCL6	P40038	420 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	SMK1	P41808	388 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	BNA1	P47096	177 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	YGR266W	P53326	701 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	NRM1	P53718	249 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	SNZ1	Q03148	297 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	ERB1	Q04660	807 aa	Known RBP	4.61	□□□□□ -1.67
SCM3	YDL139C	SEI1	Q06058	285 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	YPR174C	Q06616	221 aa	Predicted RBP	4.61	□□□□□ -1.67
SCM3	YDL139C	PEX27	Q08580	376 aa		4.61	□□□□□ -1.67
SCM3	YDL139C	STE7	P06784	515 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	CDC43	P18898	376 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	RPB5	P20434	215 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	APN1	P22936	367 aa		4.6	□□□□□ -1.67
SCM3	YDL139C	VMA6	P32366	345 aa	Known RBP	4.6	□□□□□ -1.67
SCM3	YDL139C	PUP2	P32379	260 aa		4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 49.1 ms