RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C GRE2Q12068 342 aaKnown RBP17.57■□□□□ 0.4
SHU1YHL006C RAD4P14736 754 aa17.55■□□□□ 0.4
SHU1YHL006C BUG1Q12191 341 aa17.55■□□□□ 0.4
SHU1YHL006C GRX1P25373 110 aaKnown RBP17.54■□□□□ 0.4
SHU1YHL006C DSD1P53095 428 aa17.53■□□□□ 0.4
SHU1YHL006C HSP104P31539 908 aaKnown RBP17.52■□□□□ 0.4
SHU1YHL006C NUP145P49687 1317 aa17.51■□□□□ 0.39
SHU1YHL006C TOS1P38288 455 aa17.5■□□□□ 0.39
SHU1YHL006C YBP2P53169 641 aa17.5■□□□□ 0.39
SHU1YHL006C NST1P53935 1240 aa17.5■□□□□ 0.39
SHU1YHL006C TRK1P12685 1235 aa17.48■□□□□ 0.39
SHU1YHL006C EAF6P47128 113 aa17.48■□□□□ 0.39
SHU1YHL006C TUM1Q08686 304 aaKnown RBP17.48■□□□□ 0.39
SHU1YHL006C UTP22P53254 1237 aaPredicted RBP17.47■□□□□ 0.39
SHU1YHL006C PAP2P53632 584 aaKnown RBP17.46■□□□□ 0.39
SHU1YHL006C AKL1P38080 1108 aaKnown RBP17.44■□□□□ 0.38
SHU1YHL006C CTF4Q01454 927 aa17.44■□□□□ 0.38
SHU1YHL006C SAP155P43612 1002 aa17.4■□□□□ 0.38
SHU1YHL006C HPC2Q01448 625 aa17.4■□□□□ 0.38
SHU1YHL006C RIX7Q07844 837 aaKnown RBP17.39■□□□□ 0.37
SHU1YHL006C MSN5P52918 1224 aa17.36■□□□□ 0.37
SHU1YHL006C AOS1Q06624 347 aa17.35■□□□□ 0.37
SHU1YHL006C NYV1Q12255 253 aa17.34■□□□□ 0.37
SHU1YHL006C NTH2P35172 780 aa17.31■□□□□ 0.36
SHU1YHL006C RMT2Q03305 412 aa17.31■□□□□ 0.36
SHU1YHL006C RRP46P53256 223 aaPredicted RBP17.3■□□□□ 0.36
SHU1YHL006C BUD27P43573 796 aaKnown RBP RIP-Chip data17.29■□□□□ 0.36not detected
SHU1YHL006C CTT1P06115 562 aa17.28■□□□□ 0.36
SHU1YHL006C KCC4P25389 1037 aa17.28■□□□□ 0.36
SHU1YHL006C ALE1Q08548 619 aa17.28■□□□□ 0.36
SHU1YHL006C CTI6Q08923 506 aa17.28■□□□□ 0.36
SHU1YHL006C UTP10P42945 1769 aaKnown RBP17.28■□□□□ 0.36
SHU1YHL006C TEA1P47988 759 aa17.27■□□□□ 0.36
SHU1YHL006C PSD2P53037 1138 aaKnown RBP17.26■□□□□ 0.35
SHU1YHL006C KIN4Q01919 800 aa17.26■□□□□ 0.35
SHU1YHL006C ERT1P38140 529 aa17.25■□□□□ 0.35
SHU1YHL006C NOP53Q12080 455 aaKnown RBP17.25■□□□□ 0.35
SHU1YHL006C YER156CP40093 338 aaKnown RBP17.24■□□□□ 0.35
SHU1YHL006C CWH41P53008 833 aa17.24■□□□□ 0.35
SHU1YHL006C YKL222CP35995 705 aa17.23■□□□□ 0.35
SHU1YHL006C RRT14P40470 206 aa17.23■□□□□ 0.35
SHU1YHL006C PHM7Q12252 991 aa17.19■□□□□ 0.34
SHU1YHL006C SER1P33330 395 aaKnown RBP17.18■□□□□ 0.34
SHU1YHL006C MDG1P53885 366 aa17.18■□□□□ 0.34
SHU1YHL006C LPD1P09624 499 aaKnown RBP17.15■□□□□ 0.34
SHU1YHL006C YFR016CP43597 1233 aaKnown RBP17.15■□□□□ 0.34
SHU1YHL006C UGA3P26370 528 aa17.14■□□□□ 0.33
SHU1YHL006C YGL082WP53155 381 aa17.14■□□□□ 0.33
SHU1YHL006C SQS1P53866 767 aaKnown RBP17.14■□□□□ 0.33
SHU1YHL006C YNL050CP53952 270 aa17.14■□□□□ 0.33
SHU1YHL006C PFF1P38244 976 aa17.12■□□□□ 0.33
SHU1YHL006C SMY1P32364 656 aaKnown RBP17.11■□□□□ 0.33
SHU1YHL006C SSP2Q08646 371 aa17.11■□□□□ 0.33
SHU1YHL006C RTR1P40084 226 aaPredicted RBP17.1■□□□□ 0.33
SHU1YHL006C PMD1P32634 1753 aa17.08■□□□□ 0.33
SHU1YHL006C ARG8P18544 423 aa17.08■□□□□ 0.32
SHU1YHL006C PRD1P25375 712 aa17.08■□□□□ 0.32
SHU1YHL006C RAT1Q02792 1006 aaKnown RBP17.08■□□□□ 0.32
SHU1YHL006C NSE3Q05541 303 aa17.08■□□□□ 0.32
SHU1YHL006C DCD1P06773 312 aa17.06■□□□□ 0.32
SHU1YHL006C BDF2Q07442 638 aa17.04■□□□□ 0.32
SHU1YHL006C APL2P36000 726 aaPredicted RBP17.03■□□□□ 0.32
SHU1YHL006C ERO1Q03103 563 aa17.02■□□□□ 0.32
SHU1YHL006C CAF20P12962 161 aaKnown RBP17.01■□□□□ 0.31
SHU1YHL006C ZDS1P50111 915 aaKnown RBP17.01■□□□□ 0.31
SHU1YHL006C YPR204WQ08995 1032 aa17.01■□□□□ 0.31
SHU1YHL006C LYS2P07702 1392 aa17.01■□□□□ 0.31
SHU1YHL006C ZDS2P54786 942 aa17■□□□□ 0.31
SHU1YHL006C IOC4Q04213 475 aa17■□□□□ 0.31
SHU1YHL006C IRC3Q06683 689 aa17■□□□□ 0.31
SHU1YHL006C THI22Q06490 572 aa16.99■□□□□ 0.31
SHU1YHL006C COQ4O13525 335 aa16.98■□□□□ 0.31
SHU1YHL006C TOP1P04786 769 aa16.98■□□□□ 0.31
SHU1YHL006C BMS1Q08965 1183 aaKnown RBP16.98■□□□□ 0.31
SHU1YHL006C ICL1P28240 557 aaPredicted RBP16.97■□□□□ 0.31
SHU1YHL006C FPK1P53739 893 aa16.97■□□□□ 0.31
SHU1YHL006C DIB1Q06819 143 aaPredicted RBP16.97■□□□□ 0.31
SHU1YHL006C SSA4P22202 642 aaKnown RBP16.96■□□□□ 0.31
SHU1YHL006C YBR287WP38355 427 aa16.96■□□□□ 0.31
SHU1YHL006C MAM1P40065 302 aa16.96■□□□□ 0.31
SHU1YHL006C VPS64Q03944 604 aa16.96■□□□□ 0.31
SHU1YHL006C RRD1P40454 393 aaKnown RBP16.95■□□□□ 0.3
SHU1YHL006C SIT4P20604 311 aa16.94■□□□□ 0.3
SHU1YHL006C MPP10P47083 593 aaKnown RBP16.94■□□□□ 0.3
SHU1YHL006C RTT109Q07794 436 aa16.93■□□□□ 0.3
SHU1YHL006C SLI15P38283 698 aa16.91■□□□□ 0.3
SHU1YHL006C UBP16Q02863 499 aa16.91■□□□□ 0.3
SHU1YHL006C PUS5Q06244 254 aa16.91■□□□□ 0.3
SHU1YHL006C PEX21P50091 288 aa16.9■□□□□ 0.3
SHU1YHL006C ATG20Q07528 640 aa16.9■□□□□ 0.3
SHU1YHL006C HAT1Q12341 374 aa16.9■□□□□ 0.3
SHU1YHL006C YKU70P32807 602 aa16.89■□□□□ 0.29
SHU1YHL006C SHC1P39000 512 aa16.88■□□□□ 0.29
SHU1YHL006C GYP7P48365 746 aa16.88■□□□□ 0.29
SHU1YHL006C YOL057WQ08225 711 aa16.88■□□□□ 0.29
SHU1YHL006C SSK22P25390 1331 aaPredicted RBP16.87■□□□□ 0.29
SHU1YHL006C FAS2P19097 1887 aaKnown RBP16.86■□□□□ 0.29
SHU1YHL006C FRD1P32614 470 aaKnown RBP16.86■□□□□ 0.29
SHU1YHL006C SYF1Q04048 859 aaPredicted RBP16.86■□□□□ 0.29
SHU1YHL006C RPN1P38764 993 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms