RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	GZF3	P42944	551 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	MET12	P46151	657 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	GPI8	P49018	411 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	NCE103	P53615	221 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	GOR1	P53839	350 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	CCE1	Q03702	353 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	GAD1	Q04792	585 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	ORM2	Q06144	216 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	NEJ1	Q06148	342 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	NGL1	Q08213	363 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	YPL272C	Q08984	517 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	ATG29	Q12092	213 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	NSI1	Q12457	570 aa		5.65	□□□□□ -1.5
RPN11	YFR004W	DCP1	Q12517	231 aa	Predicted RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	RRP12	Q12754	1228 aa	Known RBP	5.65	□□□□□ -1.5
RPN11	YFR004W	YPR096C	O13587	100 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	SIR3	P06701	978 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	SAM35	P14693	329 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	GCN3	P14741	305 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	MER1	P16523	270 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	PRO1	P32264	428 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	HOG1	P32485	435 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	5.64	□□□□□ -1.51	not detected
RPN11	YFR004W	SSO1	P32867	290 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	SKN1	P33336	771 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	NIC96	P34077	839 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	YHR112C	P38716	378 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	GDI1	P39958	451 aa	Known RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	PRE6	P40303	254 aa	Known RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	YFR020W	P43600	232 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	IMD3	P50095	523 aa	Known RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	SNP1	Q00916	300 aa	Predicted RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	SRP1	Q02821	542 aa	Known RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	SWF1	Q04629	336 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	RRN11	Q04712	507 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	YMR034C	Q05131	434 aa	Predicted RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	SPO77	Q06134	477 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	TSR2	Q06672	205 aa	Known RBP	5.64	□□□□□ -1.51
RPN11	YFR004W	BRE4	Q07660	1125 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	RCN2	Q12044	265 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	NMD4	Q12129	218 aa		5.64	□□□□□ -1.51
RPN11	YFR004W	MDM35	O60200	86 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	CDC31	P06704	161 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	NFT1	P0CE68	1218 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	PET9	P18239	318 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	KGD1	P20967	1014 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	NFS1	P25374	497 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	RPN2	P32565	945 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	MGM101	P32787	269 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	SEF1	P34228	1148 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	ZTA1	P38230	334 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	GIC1	P38785	314 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	LYS1	P38998	373 aa	RIP-Chip data	5.63	□□□□□ -1.51	not detected
RPN11	YFR004W	NDE1	P40215	560 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	RET2	P43621	546 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	ASK10	P48361	1146 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	SGF73	P53165	657 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	NQM1	P53228	333 aa	Predicted RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	ZRG17	P53735	605 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	YPL071C	Q02864	156 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	MSC1	Q03104	513 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	RRP17	Q04031	235 aa	Predicted RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	URC2	Q04411	772 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	MLC2	Q06580	163 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	RRT8	Q08219	342 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	DCI1	Q08558	271 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	TMS1	Q12116	473 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	HAL9	Q12180	1030 aa		5.63	□□□□□ -1.51
RPN11	YFR004W	SLH1	P53327	1967 aa	Known RBP	5.63	□□□□□ -1.51
RPN11	YFR004W	TY2A-LR1	P0C2J4	438 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	TY2A-F	P0CX61	438 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	TY2A-GR2	P0CX62	438 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	LAT1	P12695	482 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	THR1	P17423	357 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	IDP1	P21954	428 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	SLM5	P25345	492 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	GIT1	P25346	518 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	TY2A-C	P25383	438 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	YIM1	P28625	365 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	5.62	□□□□□ -1.51	not detected
RPN11	YFR004W	ACH1	P32316	526 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	HIR2	P32480	875 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	PET309	P32522	965 aa	Predicted RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	PET127	P32606	800 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	GPX2	P38143	162 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	EXO84	P38261	753 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	VMA22	P38784	181 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	MIT1	P40002	666 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	GIM4	P40005	111 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	ISC1	P40015	477 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	RRG9	P40156	214 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	YFL054C	P43549	646 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	SSY5	P47002	699 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	COS12	P53053	380 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	YGL260W	P53056	76 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	YGR168C	P53293	376 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	CPR8	P53728	308 aa		5.62	□□□□□ -1.51
RPN11	YFR004W	ELA1	P53861	379 aa	Predicted RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	TPS1	Q00764	495 aa	Known RBP	5.62	□□□□□ -1.51
RPN11	YFR004W	OAZ1	Q02803	292 aa		5.62	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms